# S4 generic functions for Bioconductor proteomics infrastructure

## Documentation for package ‘ProtGenerics’ version 1.18.0

- DESCRIPTION file.
- Package NEWS.

## Help Pages

ProtGenerics-package | S4 generic functions for Bioconductor proteomics infrastructure
accessions | S4 generic functions for Bioconductor proteomics infrastructure
acquisitionNum | S4 generic functions for Bioconductor proteomics infrastructure
analyser | S4 generic functions for Bioconductor proteomics infrastructure
analyserDetails | S4 generic functions for Bioconductor proteomics infrastructure
analyzer | S4 generic functions for Bioconductor proteomics infrastructure
analyzerDetails | S4 generic functions for Bioconductor proteomics infrastructure
centroided | S4 generic functions for Bioconductor proteomics infrastructure
centroided<- | S4 generic functions for Bioconductor proteomics infrastructure
chromatogram | S4 generic functions for Bioconductor proteomics infrastructure
chromatograms | S4 generic functions for Bioconductor proteomics infrastructure
collisionEnergy | S4 generic functions for Bioconductor proteomics infrastructure
collisionEnergy<- | S4 generic functions for Bioconductor proteomics infrastructure
combineFeatures | S4 generic functions for Bioconductor proteomics infrastructure
database | S4 generic functions for Bioconductor proteomics infrastructure
dataOrigin | S4 generic functions for Bioconductor proteomics infrastructure
dataOrigin<- | S4 generic functions for Bioconductor proteomics infrastructure
dataStorage | S4 generic functions for Bioconductor proteomics infrastructure
dataStorage<- | S4 generic functions for Bioconductor proteomics infrastructure
detectorType | S4 generic functions for Bioconductor proteomics infrastructure
expemail | S4 generic functions for Bioconductor proteomics infrastructure
exptitle | S4 generic functions for Bioconductor proteomics infrastructure
filterAcquisitionNum | S4 generic functions for Bioconductor proteomics infrastructure
filterDataOrigin | S4 generic functions for Bioconductor proteomics infrastructure
filterDataStorage | S4 generic functions for Bioconductor proteomics infrastructure
filterEmptySpectra | S4 generic functions for Bioconductor proteomics infrastructure
filterIsolationWindow | S4 generic functions for Bioconductor proteomics infrastructure
filterMsLevel | S4 generic functions for Bioconductor proteomics infrastructure
filterMz | S4 generic functions for Bioconductor proteomics infrastructure
filterPolarity | S4 generic functions for Bioconductor proteomics infrastructure
filterPrecursorMz | S4 generic functions for Bioconductor proteomics infrastructure
filterPrecursorScan | S4 generic functions for Bioconductor proteomics infrastructure
filterProductMz | S4 generic functions for Bioconductor proteomics infrastructure
filterRt | S4 generic functions for Bioconductor proteomics infrastructure
instrumentCustomisations | S4 generic functions for Bioconductor proteomics infrastructure
instrumentManufacturer | S4 generic functions for Bioconductor proteomics infrastructure
instrumentModel | S4 generic functions for Bioconductor proteomics infrastructure
intensity | S4 generic functions for Bioconductor proteomics infrastructure
intensity<- | S4 generic functions for Bioconductor proteomics infrastructure
ionCount | S4 generic functions for Bioconductor proteomics infrastructure
ions | S4 generic functions for Bioconductor proteomics infrastructure
ionSource | S4 generic functions for Bioconductor proteomics infrastructure
ionSourceDetails | S4 generic functions for Bioconductor proteomics infrastructure
isCentroided | S4 generic functions for Bioconductor proteomics infrastructure
isolationWindowLowerMz | S4 generic functions for Bioconductor proteomics infrastructure
isolationWindowLowerMz<- | S4 generic functions for Bioconductor proteomics infrastructure
isolationWindowTargetMz | S4 generic functions for Bioconductor proteomics infrastructure
isolationWindowTargetMz<- | S4 generic functions for Bioconductor proteomics infrastructure
isolationWindowUpperMz | S4 generic functions for Bioconductor proteomics infrastructure
isolationWindowUpperMz<- | S4 generic functions for Bioconductor proteomics infrastructure
mass | S4 generic functions for Bioconductor proteomics infrastructure
modifications | S4 generic functions for Bioconductor proteomics infrastructure
msInfo | S4 generic functions for Bioconductor proteomics infrastructure
msLevel | S4 generic functions for Bioconductor proteomics infrastructure
msLevel<- | S4 generic functions for Bioconductor proteomics infrastructure
mz | S4 generic functions for Bioconductor proteomics infrastructure
mz<- | S4 generic functions for Bioconductor proteomics infrastructure
peaks | S4 generic functions for Bioconductor proteomics infrastructure
peaks<- | S4 generic functions for Bioconductor proteomics infrastructure
peptides | S4 generic functions for Bioconductor proteomics infrastructure
polarity | S4 generic functions for Bioconductor proteomics infrastructure
polarity<- | S4 generic functions for Bioconductor proteomics infrastructure
precAcquisitionNum | S4 generic functions for Bioconductor proteomics infrastructure
precScanNum | S4 generic functions for Bioconductor proteomics infrastructure
precursorCharge | S4 generic functions for Bioconductor proteomics infrastructure
precursorCharge<- | S4 generic functions for Bioconductor proteomics infrastructure
precursorIntensity | S4 generic functions for Bioconductor proteomics infrastructure
precursorIntensity<- | S4 generic functions for Bioconductor proteomics infrastructure
precursorMz | S4 generic functions for Bioconductor proteomics infrastructure
precursorMz<- | S4 generic functions for Bioconductor proteomics infrastructure
processingData | S4 generic functions for Bioconductor proteomics infrastructure
processingData<- | S4 generic functions for Bioconductor proteomics infrastructure
productMz | S4 generic functions for Bioconductor proteomics infrastructure
productMz<- | S4 generic functions for Bioconductor proteomics infrastructure
proteins | S4 generic functions for Bioconductor proteomics infrastructure
ProtGenerics | S4 generic functions for Bioconductor proteomics infrastructure
psms | S4 generic functions for Bioconductor proteomics infrastructure
rtime | S4 generic functions for Bioconductor proteomics infrastructure
rtime<- | S4 generic functions for Bioconductor proteomics infrastructure
scanIndex | S4 generic functions for Bioconductor proteomics infrastructure
scans | S4 generic functions for Bioconductor proteomics infrastructure
smooth | S4 generic functions for Bioconductor proteomics infrastructure
smoothed | S4 generic functions for Bioconductor proteomics infrastructure
smoothed<- | S4 generic functions for Bioconductor proteomics infrastructure
spectra | S4 generic functions for Bioconductor proteomics infrastructure
spectra<- | S4 generic functions for Bioconductor proteomics infrastructure
spectraData | S4 generic functions for Bioconductor proteomics infrastructure
spectraData<- | S4 generic functions for Bioconductor proteomics infrastructure
spectraNames | S4 generic functions for Bioconductor proteomics infrastructure
spectraNames<- | S4 generic functions for Bioconductor proteomics infrastructure
spectraVariables | S4 generic functions for Bioconductor proteomics infrastructure
tic | S4 generic functions for Bioconductor proteomics infrastructure
tolerance | S4 generic functions for Bioconductor proteomics infrastructure
writeMSData | S4 generic functions for Bioconductor proteomics infrastructure