# Software to enable the smooth interfacing of different database packages

## Documentation for package ‘OrganismDbi’ version 1.48.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

asBED-method | Extract genomic features from an object
asGFF-method | Extract genomic features from an object
cds-method | Extract genomic features from an object
cdsBy-method | Extract genomic features from an object
class:MultiDb | MultiDb and OrganismDb objects
class:OrganismDb | MultiDb and OrganismDb objects
columns-method | MultiDb and OrganismDb objects
dbconn-method | MultiDb and OrganismDb objects
dbfile-method | MultiDb and OrganismDb objects
distance-method | Extract genomic features from an object
exons-method | Extract genomic features from an object
exonsBy-method | Extract genomic features from an object
extractTranscriptSeqs-method | Extract genomic features from an object
extractUpstreamSeqs-method | Extract genomic features from an object
fiveUTRsByTranscript-method | Extract genomic features from an object
genes-method | Extract genomic features from an object
getTxDbIfAvailable | Extract genomic features from an object
getTxDbIfAvailable-method | Extract genomic features from an object
intronsByTranscript-method | Extract genomic features from an object
isActiveSeq-method | Extract genomic features from an object
isActiveSeq<--method | Extract genomic features from an object
keys-method | MultiDb and OrganismDb objects
keytypes-method | MultiDb and OrganismDb objects
makeOrganismDbFromBiomart | Make a OrganismDb object from annotations available on a BioMart database
makeOrganismDbFromTxDb | Make an OrganismDb object from an existing TxDb object.
makeOrganismDbFromUCSC | Make a OrganismDb object from annotations available at the UCSC Genome Browser
makeOrganismPackage | Making OrganismDb packages from annotation packages.
mapIds-method | MultiDb and OrganismDb objects
mapToTranscripts-method | Map range coordinates between transcripts and genome space
metadata-method | MultiDb and OrganismDb objects
microRNAs-method | Extract genomic features from an object
MultiDb | MultiDb and OrganismDb objects
MultiDb-class | MultiDb and OrganismDb objects
OrganismDb | MultiDb and OrganismDb objects
OrganismDb-class | MultiDb and OrganismDb objects
promoters-method | Extract genomic features from an object
resources | MultiDb and OrganismDb objects
resources-method | MultiDb and OrganismDb objects
select-method | MultiDb and OrganismDb objects
selectByRanges | MultiDb and OrganismDb objects
selectByRanges-method | MultiDb and OrganismDb objects
selectRangesById | MultiDb and OrganismDb objects
selectRangesById-method | MultiDb and OrganismDb objects
seqinfo-method | MultiDb and OrganismDb objects
taxonomyId-method | MultiDb and OrganismDb objects
threeUTRsByTranscript-method | Extract genomic features from an object
transcripts-method | Extract genomic features from an object
transcriptsBy-method | Extract genomic features from an object
tRNAs-method | Extract genomic features from an object
TxDb | MultiDb and OrganismDb objects
TxDb-method | MultiDb and OrganismDb objects
TxDb<- | MultiDb and OrganismDb objects
TxDb<--method | MultiDb and OrganismDb objects