Package: r-bioc-netsam
Version: 1.52.0+ds-1
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 3089
Depends: r-api-4.0, r-api-bioc-3.23, r-cran-seriation (>= 1.0-6), r-cran-igraph (>= 2.0.0), r-cran-wgcna (>= 1.34.0), r-bioc-biomart (>= 2.18.0), r-bioc-annotationdbi (>= 1.28.0), r-cran-doparallel (>= 1.0.10), r-cran-foreach (>= 1.4.0), r-cran-survival (>= 2.37-7), r-bioc-go.db (>= 2.10.0), r-cran-r2html (>= 2.2.0), r-cran-dbi (>= 0.5-1), r-pkg-team-core-architecture
Suggests: r-cran-runit, r-bioc-biocgenerics, r-bioc-org.hs.eg.db, r-cran-rmarkdown, r-cran-knitr, r-cran-markdown
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/NetSAM/
Description: Network Seriation And Modularization
 Current high-throughput analyses for gene expression data
 commonly yield a genome-wide overview on genes affected
 by a disturbance (genetic mutation, drug, ...) to a tissue
 sample or cell culture. But not all individuals correspond
 equally - because of differences in the effect of the
 disturbance or yet unknown gentic cofactors. The genes
 always changed may be closer to the cause of the disturbance.
 Those correlating a bit less with the disturbance may
 correlate well with another gene, and thus may constitue
 a pathway carrying the phenotype or the biological reaction
 to it.
 .
 The NetSAM (Network Seriation and Modularization) package
 takes an edge-list representation of a network as an input,
 performs network seriation and modularization analysis, and
 generates as files that can be used as an input for the
 one-dimensional network visualization tool NetGestalt
 (http://www.netgestalt.org) or other network analysis.
