# megadepth: BigWig and BAM related utilities

## Documentation for package ‘megadepth’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bam_to_bigwig | Convert a BAM file to a BigWig
bam_to_junctions | Extract junctions from a BAM file
get_coverage | Compute coverage summarizations across a set of regions
install_megadepth | Install Megadepth
megadepth_cmd | Run Megadepth commands
megadepth_shell | Run Megadepth commands
process_junction_table | Process junctions into a STAR compatible format
read_coverage | Read a coverage TSV file created by Megadepth
read_coverage_table | Read a coverage TSV file created by Megadepth
read_junction_table | Read a junction TSV file created by Megadepth as a table