Package: r-bioc-isoformswitchanalyzer
Version: 2.6.0+ds-3
Architecture: amd64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 4721
Depends: r-api-4.0, r-api-bioc-3.20, r-bioc-limma, r-bioc-dexseq, r-bioc-saturn (>= 1.7.0), r-bioc-sva, r-cran-ggplot2 (>= 3.3.5), r-bioc-pfamanalyzer, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings (>= 2.50.0), r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport (>= 1.7.1), r-bioc-tximeta (>= 1.7.12), r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase, r-bioc-summarizedexperiment, r-cran-tidyr, r-bioc-s4vectors, r-bioc-biocparallel, r-bioc-pwalign
Suggests: r-cran-knitr, r-cran-rmarkdown
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/IsoformSwitchAnalyzeR/
Description: Identify, Annotate and Visualize Alternative Splicing and
 Isoform Switches with Functional Consequences from both short- and
 long-read RNA-seq data. Analysis of alternative splicing and
 isoform switches with predicted functional consequences (e.g.
 gain/loss of protein domains etc.) from quantification of all
 types of RNASeq by tools such as Kallisto, Salmon, StringTie,
 Cufflinks/Cuffdiff etc.
