Package: r-bioc-edaseq
Version: 2.36.0+dfsg-1
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 525
Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-biobase (>= 2.15.1), r-bioc-shortread (>= 1.11.42), r-bioc-biocgenerics, r-bioc-iranges (>= 1.13.9), r-bioc-aroma.light, r-bioc-rsamtools (>= 1.5.75), r-bioc-biomart, r-bioc-biostrings, r-bioc-annotationdbi, r-bioc-genomicfeatures, r-bioc-genomicranges, r-cran-biocmanager
Suggests: r-bioc-biocstyle, r-cran-knitr, r-bioc-edger, r-cran-kernsmooth, r-cran-testthat, r-bioc-deseq2, r-cran-rmarkdown
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/EDASeq/
Description: GNU R exploratory data analysis and normalization for RNA-Seq
 Numerical and graphical summaries of RNA-Seq read data.
 Within-lane normalization procedures to adjust for GC-content
 effect (or other gene-level effects) on read counts: loess
 robust local regression, global-scaling, and full-quantile
 normalization (Risso et al., 2011). Between-lane normalization
 procedures to adjust for distributional differences between
 lanes (e.g., sequencing depth): global-scaling and
 full-quantile normalization (Bullard et al., 2010).
