Package: cummeRbund
Title: Analysis, exploration, manipulation, and visualization of
        Cufflinks high-throughput sequencing data.
Version: 2.48.0
Date: 2013-04-22
Author: L. Goff, C. Trapnell, D. Kelley
Description: Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data.  In addition, provides numerous plotting functions for commonly used visualizations.
Imports: methods, plyr, BiocGenerics, S4Vectors (>= 0.9.25), Biobase
Depends: R (>= 2.7.0), BiocGenerics (>= 0.3.2), RSQLite, ggplot2,
        reshape2, fastcluster, rtracklayer, Gviz
Suggests: cluster, plyr, NMFN, stringr, GenomicFeatures, GenomicRanges,
        rjson
Maintainer: Loyal A. Goff <lgoff@csail.mit.edu>
License: Artistic-2.0
Collate: AllGenerics.R AllClasses.R database-setup.R methods-CuffSet.R
        methods-CuffData.R methods-CuffDist.R methods-CuffGeneSet.R
        methods-CuffFeatureSet.R methods-CuffGene.R
        methods-CuffFeature.R tools.R
LazyLoad: yes
biocViews: HighThroughputSequencing, HighThroughputSequencingData,
        RNAseq, RNAseqData, GeneExpression, DifferentialExpression,
        Infrastructure, DataImport, DataRepresentation, Visualization,
        Bioinformatics, Clustering, MultipleComparisons, QualityControl
git_url: https://git.bioconductor.org/packages/cummeRbund
git_branch: RELEASE_3_20
git_last_commit: 2ca240a
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 00:15:52 UTC; biocbuild
Built: R 4.6.0; ; 'Fri, 13 Mar 2026 13:10:23 +0900'; unix
