Package: r-bioc-cigarillo
Version: 1.2.1+dfsg-1
Architecture: amd64
Architecture-Variant: amd64v3
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 247
Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics, r-bioc-s4vectors (>= 0.47.2), r-bioc-iranges, r-bioc-biostrings, libc6 (>= 2.14), r-pkg-team-core-architecture
Suggests: r-bioc-rsamtools, r-bioc-genomicalignments, r-cran-testthat, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/cigarillo/
Description: Efficient manipulation of CIGAR strings
 CIGAR stands for Concise Idiosyncratic Gapped Alignment Report.
 CIGAR strings are found in the BAM files produced by most aligners and in
 the AIRR-formatted output produced by IgBLAST. The cigarillo package provides
 functions to parse and inspect CIGAR strings, trim them, turn them into ranges
 of positions relative to the "query space" or "reference space", and project
 positions or sequences from one space to the other. Note that these operations
 are low-level operations that the user rarely needs to perform directly.
 More typically, they are performed behind the scene by higher-level
 functionality implemented in other packages like Bioconductor packages
 GenomicAlignments and igblastr.
