# Interface to BioMart databases (e.g. Ensembl, COSMIC, Wormbase and Gramene)

## Documentation for package ‘biomaRt’ version 2.34.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

attributePages | Gives a summary of the attribute pages
columns | Retrieve information from the BioMart databases
columns-method | Retrieve information from the BioMart databases
exportFASTA | Exports getSequence results to FASTA format
filterOptions | Displays the filter options
filterType | Displays the filter type
getBM | Retrieves information from the BioMart database
getBMlist | Retrieves information from the BioMart database
getGene | Retrieves gene annotation information given a vector of identifiers
getLDS | Retrieves information from two linked datasets
getSequence | Retrieves sequences
getXML | Retrieves information from the BioMart database using an XML query
keys | Retrieve information from the BioMart databases
keys-method | Retrieve information from the BioMart databases
keytypes | Retrieve information from the BioMart databases
keytypes-method | Retrieve information from the BioMart databases
listAttributes | lists the attributes available in the selected dataset
listDatasets | lists the datasets available in the selected BioMart database
listEnsembl | lists the available BioMart databases hosted by Ensembl
listEnsemblArchives | Lists the available archived versions of Ensembl
listFilters | lists the filters available in the selected dataset
listMarts | lists the available BioMart databases
Mart-class | Class Mart
NP2009code | Display the analysis code from the 2009 Nature protocols paper
select | Retrieve information from the BioMart databases
select-method | Retrieve information from the BioMart databases
select-methods | Retrieve information from the BioMart databases
show-method | Class Mart
useDataset | Select a dataset to use and updates Mart object
useEnsembl | Connects to the selected BioMart database and dataset hosted by Ensembl
useMart | Connects to the selected BioMart database and dataset