
skbio.sequence.SubstitutionMatrix
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.. currentmodule:: skbio.sequence

.. autoclass:: SubstitutionMatrix




   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~SubstitutionMatrix.alphabet
      ~SubstitutionMatrix.is_ascii
      ~SubstitutionMatrix.scores
   

   
   .. rubric:: Attributes (inherited)

   .. autoinherit::
   
      ~SubstitutionMatrix.T
      ~SubstitutionMatrix.data
      ~SubstitutionMatrix.default_write_format
      ~SubstitutionMatrix.dtype
      ~SubstitutionMatrix.ids
      ~SubstitutionMatrix.shape
      ~SubstitutionMatrix.size
   
   

   
   
   .. rubric:: Methods

   .. autosummary::
      :toctree:
   
      ~SubstitutionMatrix.by_name
   
      ~SubstitutionMatrix.copy
   
      ~SubstitutionMatrix.from_dict
   
      ~SubstitutionMatrix.get_names
   
      ~SubstitutionMatrix.identity
   
      ~SubstitutionMatrix.to_dict
   
   

   
   .. rubric:: Methods (inherited)

   .. autoinherit::
      ~SubstitutionMatrix.between
      ~SubstitutionMatrix.filter
      ~SubstitutionMatrix.from_iterable
      ~SubstitutionMatrix.index
      ~SubstitutionMatrix.plot
      ~SubstitutionMatrix.read
      ~SubstitutionMatrix.redundant_form
      ~SubstitutionMatrix.rename
      ~SubstitutionMatrix.to_data_frame
      ~SubstitutionMatrix.transpose
      ~SubstitutionMatrix.within
      ~SubstitutionMatrix.write
   
   

   
   

   
   .. rubric:: Special methods (inherited)

   .. autoinherit::
   
      ~SubstitutionMatrix.__contains__
      ~SubstitutionMatrix.__eq__
      ~SubstitutionMatrix.__ge__
      ~SubstitutionMatrix.__getitem__
      ~SubstitutionMatrix.__getstate__
      ~SubstitutionMatrix.__gt__
      ~SubstitutionMatrix.__le__
      ~SubstitutionMatrix.__lt__
      ~SubstitutionMatrix.__ne__
      ~SubstitutionMatrix.__str__
   
   




   
   .. rubric:: Details

   
   
   .. autoattribute:: SubstitutionMatrix.alphabet
   
   
   
   .. autoattribute:: SubstitutionMatrix.is_ascii
   
   
   
   .. autoattribute:: SubstitutionMatrix.scores
   
   

   
   