
skbio.alignment.AlignmentStructure
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.. currentmodule:: skbio.alignment

.. autoclass:: AlignmentStructure




   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~AlignmentStructure.aligned_query_sequence
      ~AlignmentStructure.aligned_target_sequence
      ~AlignmentStructure.cigar
      ~AlignmentStructure.optimal_alignment_score
      ~AlignmentStructure.query_begin
      ~AlignmentStructure.query_end
      ~AlignmentStructure.query_sequence
      ~AlignmentStructure.suboptimal_alignment_score
      ~AlignmentStructure.target_begin
      ~AlignmentStructure.target_end_optimal
      ~AlignmentStructure.target_end_suboptimal
      ~AlignmentStructure.target_sequence
   

   
   

   
   
   .. rubric:: Methods

   .. autosummary::
      :toctree:
   
      ~AlignmentStructure.is_zero_based
   
      ~AlignmentStructure.set_zero_based
   
   

   
   

   
   
   .. rubric:: Special methods

   .. autosummary::
   
      ~AlignmentStructure.__getitem__
      ~AlignmentStructure.__setstate__
      ~AlignmentStructure.__str__
   

   
   .. rubric:: Special methods (inherited)

   .. autoinherit::
   
      ~AlignmentStructure.__eq__
      ~AlignmentStructure.__ge__
      ~AlignmentStructure.__getstate__
      ~AlignmentStructure.__gt__
      ~AlignmentStructure.__hash__
      ~AlignmentStructure.__le__
      ~AlignmentStructure.__lt__
      ~AlignmentStructure.__ne__
   
   




   
   .. rubric:: Details

   
   
   .. autoattribute:: AlignmentStructure.aligned_query_sequence
   
   
   
   .. autoattribute:: AlignmentStructure.aligned_target_sequence
   
   
   
   .. autoattribute:: AlignmentStructure.cigar
   
   
   
   .. autoattribute:: AlignmentStructure.optimal_alignment_score
   
   
   
   .. autoattribute:: AlignmentStructure.query_begin
   
   
   
   .. autoattribute:: AlignmentStructure.query_end
   
   
   
   .. autoattribute:: AlignmentStructure.query_sequence
   
   
   
   .. autoattribute:: AlignmentStructure.suboptimal_alignment_score
   
   
   
   .. autoattribute:: AlignmentStructure.target_begin
   
   
   
   .. autoattribute:: AlignmentStructure.target_end_optimal
   
   
   
   .. autoattribute:: AlignmentStructure.target_end_suboptimal
   
   
   
   .. autoattribute:: AlignmentStructure.target_sequence
   
   

   
   
   .. automethod:: AlignmentStructure.__getitem__
   
   
   
   .. automethod:: AlignmentStructure.__setstate__
   
   
   
   .. automethod:: AlignmentStructure.__str__
   
   
   