
skbio.sequence.SubstitutionMatrix
=================================




   
      
   

   

   

   
      
   

   

   
      
   

   

   
      
   

   
      
   

   
      
   

   

   

   
      
   

   
      
   

   
      
   

   

   

   

   

   

   

   
      
   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   


.. currentmodule:: skbio.sequence

.. autoclass:: SubstitutionMatrix

   
   .. rubric:: Attributes

   .. autosummary::
   
      ~SubstitutionMatrix.T
      ~SubstitutionMatrix.alphabet
      ~SubstitutionMatrix.data
      ~SubstitutionMatrix.default_write_format
      ~SubstitutionMatrix.dtype
      ~SubstitutionMatrix.ids
      ~SubstitutionMatrix.is_ascii
      ~SubstitutionMatrix.png
      ~SubstitutionMatrix.scores
      ~SubstitutionMatrix.shape
      ~SubstitutionMatrix.size
      ~SubstitutionMatrix.svg
   

   
   .. rubric:: Built-ins

   .. autosummary::
      :toctree:
   
      ~SubstitutionMatrix.__contains__
      ~SubstitutionMatrix.__eq__
      ~SubstitutionMatrix.__ge__
      ~SubstitutionMatrix.__getitem__
      ~SubstitutionMatrix.__getstate__
      ~SubstitutionMatrix.__gt__
      ~SubstitutionMatrix.__le__
      ~SubstitutionMatrix.__lt__
      ~SubstitutionMatrix.__ne__
      ~SubstitutionMatrix.__str__
   

   
   .. rubric:: Methods

   .. autosummary::
      :toctree:
   
      
      
      ~SubstitutionMatrix.between
      
      
      ~SubstitutionMatrix.by_name
      
      
      ~SubstitutionMatrix.copy
      
      
      ~SubstitutionMatrix.filter
      
      
      ~SubstitutionMatrix.from_dict
      
      
      ~SubstitutionMatrix.from_iterable
      
      
      ~SubstitutionMatrix.get_names
      
      
      ~SubstitutionMatrix.identity
      
      
      ~SubstitutionMatrix.index
      
      
      ~SubstitutionMatrix.plot
      
      
      ~SubstitutionMatrix.read
      
      
      ~SubstitutionMatrix.redundant_form
      
      
      ~SubstitutionMatrix.rename
      
      
      ~SubstitutionMatrix.to_data_frame
      
      
      ~SubstitutionMatrix.to_dict
      
      
      ~SubstitutionMatrix.transpose
      
      
      ~SubstitutionMatrix.within
      
      
      ~SubstitutionMatrix.write
      
   