
skbio.alignment.AlignmentStructure
==================================




   

   

   
      
   

   

   
      
   

   

   
      
   

   
      
   

   
      
   

   

   

   
      
   

   
      
   

   
      
   

   

   

   

   

   

   
      
   

   

   
      
   

   

   

   

   

   


.. currentmodule:: skbio.alignment

.. autoclass:: AlignmentStructure

   
   .. rubric:: Attributes

   .. autosummary::
   
      ~AlignmentStructure.aligned_query_sequence
      ~AlignmentStructure.aligned_target_sequence
      ~AlignmentStructure.cigar
      ~AlignmentStructure.optimal_alignment_score
      ~AlignmentStructure.query_begin
      ~AlignmentStructure.query_end
      ~AlignmentStructure.query_sequence
      ~AlignmentStructure.suboptimal_alignment_score
      ~AlignmentStructure.target_begin
      ~AlignmentStructure.target_end_optimal
      ~AlignmentStructure.target_end_suboptimal
      ~AlignmentStructure.target_sequence
   

   
   .. rubric:: Built-ins

   .. autosummary::
      :toctree:
   
      ~AlignmentStructure.__eq__
      ~AlignmentStructure.__ge__
      ~AlignmentStructure.__getitem__
      ~AlignmentStructure.__gt__
      ~AlignmentStructure.__hash__
      ~AlignmentStructure.__le__
      ~AlignmentStructure.__lt__
      ~AlignmentStructure.__ne__
      ~AlignmentStructure.__setstate__
      ~AlignmentStructure.__str__
   

   
   .. rubric:: Methods

   .. autosummary::
      :toctree:
   
      
      
      ~AlignmentStructure.is_zero_based
      
      
      ~AlignmentStructure.set_zero_based
      
   