
skbio.sequence.RNA
==================




   
      
   

   
      
   

   
      
   

   
      
   

   

   

   
      
   

   

   
      
   

   

   
      
   

   
      
   

   

   

   
      
   

   
      
   

   
      
   

   
      
   

   
      
   

   

   

   

   

   
      
   

   

   

   
      
   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   


.. currentmodule:: skbio.sequence

.. autoclass:: RNA

   
   .. rubric:: Attributes

   .. autosummary::
   
      ~RNA.alphabet
      ~RNA.complement_map
      ~RNA.default_gap_char
      ~RNA.default_write_format
      ~RNA.definite_chars
      ~RNA.degenerate_chars
      ~RNA.degenerate_map
      ~RNA.gap_chars
      ~RNA.interval_metadata
      ~RNA.metadata
      ~RNA.nondegenerate_chars
      ~RNA.observed_chars
      ~RNA.positional_metadata
      ~RNA.values
   

   
   .. rubric:: Built-ins

   .. autosummary::
      :toctree:
   
      ~RNA.__bool__
      ~RNA.__contains__
      ~RNA.__copy__
      ~RNA.__deepcopy__
      ~RNA.__eq__
      ~RNA.__ge__
      ~RNA.__getitem__
      ~RNA.__gt__
      ~RNA.__iter__
      ~RNA.__le__
      ~RNA.__len__
      ~RNA.__lt__
      ~RNA.__ne__
      ~RNA.__reversed__
      ~RNA.__str__
   

   
   .. rubric:: Methods

   .. autosummary::
      :toctree:
   
      
      
      ~RNA.complement
      
      
      ~RNA.concat
      
      
      ~RNA.count
      
      
      ~RNA.definites
      
      
      ~RNA.degap
      
      
      ~RNA.degenerates
      
      
      ~RNA.distance
      
      
      ~RNA.expand_degenerates
      
      
      ~RNA.find_motifs
      
      
      ~RNA.find_with_regex
      
      
      ~RNA.frequencies
      
      
      ~RNA.gaps
      
      
      ~RNA.gc_content
      
      
      ~RNA.gc_frequency
      
      
      ~RNA.has_definites
      
      
      ~RNA.has_degenerates
      
      
      ~RNA.has_gaps
      
      
      ~RNA.has_interval_metadata
      
      
      ~RNA.has_metadata
      
      
      ~RNA.has_nondegenerates
      
      
      ~RNA.has_positional_metadata
      
      
      ~RNA.index
      
      
      ~RNA.is_reverse_complement
      
      
      ~RNA.iter_contiguous
      
      
      ~RNA.iter_kmers
      
      
      ~RNA.kmer_frequencies
      
      
      ~RNA.lowercase
      
      
      ~RNA.match_frequency
      
      
      ~RNA.matches
      
      
      ~RNA.mismatch_frequency
      
      
      ~RNA.mismatches
      
      
      ~RNA.nondegenerates
      
      
      ~RNA.read
      
      
      ~RNA.replace
      
      
      ~RNA.reverse_complement
      
      
      ~RNA.reverse_transcribe
      
      
      ~RNA.to_regex
      
      
      ~RNA.translate
      
      
      ~RNA.translate_six_frames
      
      
      ~RNA.write
      
   