
skbio.sequence.Sequence
=======================




   
      
   

   
      
   

   
      
   

   
      
   

   

   
      
   

   

   
      
   

   

   
      
   

   
      
   

   
      
   

   
      
   

   

   

   

   

   
      
   

   

   
      
   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   


.. currentmodule:: skbio.sequence

.. autoclass:: Sequence

   
   .. rubric:: Attributes

   .. autosummary::
   
      ~Sequence.default_write_format
      ~Sequence.interval_metadata
      ~Sequence.metadata
      ~Sequence.observed_chars
      ~Sequence.positional_metadata
      ~Sequence.values
   

   
   .. rubric:: Built-ins

   .. autosummary::
      :toctree:
   
      ~Sequence.__bool__
      ~Sequence.__contains__
      ~Sequence.__copy__
      ~Sequence.__deepcopy__
      ~Sequence.__eq__
      ~Sequence.__getitem__
      ~Sequence.__init_subclass__
      ~Sequence.__iter__
      ~Sequence.__len__
      ~Sequence.__ne__
      ~Sequence.__reversed__
      ~Sequence.__str__
   

   
   .. rubric:: Methods

   .. autosummary::
      :toctree:
   
      
      
      ~Sequence.concat
      
      
      ~Sequence.count
      
      
      ~Sequence.distance
      
      
      ~Sequence.find_with_regex
      
      
      ~Sequence.frequencies
      
      
      ~Sequence.has_interval_metadata
      
      
      ~Sequence.has_metadata
      
      
      ~Sequence.has_positional_metadata
      
      
      ~Sequence.index
      
      
      ~Sequence.iter_contiguous
      
      
      ~Sequence.iter_kmers
      
      
      ~Sequence.kmer_frequencies
      
      
      ~Sequence.lowercase
      
      
      ~Sequence.match_frequency
      
      
      ~Sequence.matches
      
      
      ~Sequence.mismatch_frequency
      
      
      ~Sequence.mismatches
      
      
      ~Sequence.read
      
      
      ~Sequence.replace
      
      
      ~Sequence.write
      
   