skbio.sequence.Protein
======================

.. currentmodule:: skbio.sequence

.. autoclass:: Protein

   

   .. HACK -- the point here is that we don't want this to appear in the output, but the autosummary should still generate the pages.
      .. autosummary::
         :toctree:
      
         
         Protein.__bool__
         
         Protein.__contains__
         
         Protein.__copy__
         
         Protein.__deepcopy__
         
         Protein.__eq__
         
         Protein.__format__
         
         Protein.__getitem__
         
         
         Protein.__iter__
         
         Protein.__len__
         
         Protein.__ne__
         
         
         Protein.__nonzero__
         
         
         
         
         Protein.__reversed__
         
         
         Protein.__str__
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         
         Protein.concat
         
         Protein.copy
         
         Protein.count
         
         Protein.degap
         
         Protein.degenerates
         
         Protein.distance
         
         Protein.expand_degenerates
         
         Protein.find_motifs
         
         Protein.find_with_regex
         
         Protein.frequencies
         
         Protein.gaps
         
         Protein.has_degenerates
         
         Protein.has_gaps
         
         Protein.has_metadata
         
         Protein.has_nondegenerates
         
         Protein.has_positional_metadata
         
         Protein.has_stops
         
         Protein.index
         
         Protein.iter_contiguous
         
         Protein.iter_kmers
         
         Protein.kmer_frequencies
         
         Protein.lowercase
         
         Protein.match_frequency
         
         Protein.matches
         
         Protein.mismatch_frequency
         
         Protein.mismatches
         
         Protein.nondegenerates
         
         Protein.read
         
         Protein.stops
         
         Protein.to_regex
         
         Protein.write



   

   .. HACK -- the point here is that we don't want this to appear in the output, but the autosummary should still generate the pages.
      .. autosummary::
         :toctree:
      
         Protein.alphabet
         Protein.default_gap_char
         Protein.default_write_format
         Protein.degenerate_chars
         Protein.degenerate_map
         Protein.gap_chars
         Protein.metadata
         Protein.nondegenerate_chars
         Protein.observed_chars
         Protein.positional_metadata
         Protein.stop_chars
         Protein.values

