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# scipy.stats.mstats.chisquare

`scipy.stats.mstats.``chisquare`(f_obs, f_exp=None, ddof=0, axis=0)

  Calculates a one-way chi square test.

  The chi square test tests the null hypothesis that the categorical data has the given frequencies.

  Parameters:

  f_obs : array_like

  > Observed frequencies in each category.

  f_exp : array_like, optional

  > Expected frequencies in each category. By default the categories are assumed to be equally likely.

  ddof : int, optional

  > “Delta degrees of freedom”: adjustment to the degrees of freedom for the p-value. The p-value is computed using a chi-squared distribution with `k - 1 - ddof` degrees of freedom, where k is the number of observed frequencies. The default value of ddof is 0.

  axis : int or None, optional

  > The axis of the broadcast result of f_obs and f_exp along which to apply the test. If axis is None, all values in f_obs are treated as a single data set. Default is 0.

  Returns:

  chisq : float or ndarray

  > The chi-squared test statistic. The value is a float if axis is None or f_obs and f_exp are 1-D.

  p : float or ndarray

  > The p-value of the test. The value is a float if ddof and the return value chisq are scalars.

  See also

  `power_divergence`, `mstats.chisquare`

  Notes

  This test is invalid when the observed or expected frequencies in each category are too small. A typical rule is that all of the observed and expected frequencies should be at least 5.

  The default degrees of freedom, k-1, are for the case when no parameters of the distribution are estimated. If p parameters are estimated by efficient maximum likelihood then the correct degrees of freedom are k-1-p. If the parameters are estimated in a different way, then the dof can be between k-1-p and k-1. However, it is also possible that the asymptotic distribution is not a chisquare, in which case this test is not appropriate.

  References

  [R417] | Lowry, Richard. “Concepts and Applications of Inferential Statistics”. Chapter 8. http://faculty.vassar.edu/lowry/ch8pt1.html

  [R418] | “Chi-squared test”, http://en.wikipedia.org/wiki/Chi-squared_test

  Examples

  When just f_obs is given, it is assumed that the expected frequencies are uniform and given by the mean of the observed frequencies.

      >>> from scipy.stats import chisquare
      >>> chisquare([16, 18, 16, 14, 12, 12])
      (2.0, 0.84914503608460956)

  With f_exp the expected frequencies can be given.

      >>> chisquare([16, 18, 16, 14, 12, 12], f_exp=[16, 16, 16, 16, 16, 8])
      (3.5, 0.62338762774958223)

  When f_obs is 2-D, by default the test is applied to each column.

      >>> obs = np.array([[16, 18, 16, 14, 12, 12], [32, 24, 16, 28, 20, 24]]).T
      >>> obs.shape
      (6, 2)
      >>> chisquare(obs)
      (array([ 2.        ,  6.66666667]), array([ 0.84914504,  0.24663415]))

  By setting `axis=None`, the test is applied to all data in the array, which is equivalent to applying the test to the flattened array.

      >>> chisquare(obs, axis=None)
      (23.31034482758621, 0.015975692534127565)
      >>> chisquare(obs.ravel())
      (23.31034482758621, 0.015975692534127565)

  ddof is the change to make to the default degrees of freedom.

      >>> chisquare([16, 18, 16, 14, 12, 12], ddof=1)
      (2.0, 0.73575888234288467)

  The calculation of the p-values is done by broadcasting the chi-squared statistic with ddof.

      >>> chisquare([16, 18, 16, 14, 12, 12], ddof=[0,1,2])
      (2.0, array([ 0.84914504,  0.73575888,  0.5724067 ]))

  f_obs and f_exp are also broadcast. In the following, f_obs has shape (6,) and f_exp has shape (2, 6), so the result of broadcasting f_obs and f_exp has shape (2, 6). To compute the desired chi-squared statistics, we use `axis=1`:

      >>> chisquare([16, 18, 16, 14, 12, 12],
      ...           f_exp=[[16, 16, 16, 16, 16, 8], [8, 20, 20, 16, 12, 12]],
      ...           axis=1)
      (array([ 3.5 ,  9.25]), array([ 0.62338763,  0.09949846]))