python-pysam (0.23.0+ds-1build1) plucky; urgency=medium

  * No-change rebuild with Python 3.13 only

 -- Graham Inggs <ginggs@ubuntu.com>  Tue, 04 Mar 2025 19:20:45 +0000

python-pysam (0.23.0+ds-1) unstable; urgency=medium

  * Migrate python-pysam 0.23.0 from experimental to unstable.

 -- Étienne Mollier <emollier@debian.org>  Thu, 06 Feb 2025 21:31:01 +0100

python-pysam (0.23.0+ds-0+exp1) experimental; urgency=medium

  * New upstream version 0.23.0+ds
  * d/copyright: account for uscan warning about missing files.
  * d/copyright: update year and freshen authors list.
  * htslib-1.20.patch: delete: applied upstream.
  * d/patches/*: refresh patches.
  * d/control: pysam 0.23 depends on htslib 1.21.
  * d/patches/*: normalize Last-Update timestamp.

 -- Étienne Mollier <emollier@debian.org>  Wed, 05 Feb 2025 21:51:07 +0100

python-pysam (0.22.1+ds-2) unstable; urgency=medium

  * htslib-1.20.patch: new: anticipate test failure.
    Upcoming upload of htslib 1.20 comes with improvements causing a test
    failure in pysam.  This change anticipates the correction without
    introduction of regressions with existing releases of htslib.
    Thanks to John Marshall

 -- Étienne Mollier <emollier@debian.org>  Wed, 29 May 2024 13:23:03 +0200

python-pysam (0.22.1+ds-1) unstable; urgency=medium

  * New upstream version 0.22.1+ds
  * d/copyright: update copyright year.
  * d/control: declare compliance to standards version 4.7.0.
  * d/python-pysam.links: delete: now irrelevant.
    This file set symbolic links up to help with Python 2.7, which is
    obsolete and should not be used anymore, so these links are not useful
    anymore.
  * d/control: remove dh-exec: it is not in use anymore.
  * skip_test_remote.patch: unfuzz.
  * skip-test-on-32-bit.patch: refresh.

 -- Étienne Mollier <emollier@debian.org>  Sun, 12 May 2024 14:35:42 +0200

python-pysam (0.22.0+ds-1) unstable; urgency=medium

  * New upstream version
    Closes: #1055505
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Fix clean target
    Closes: #1047165

 -- Andreas Tille <tille@debian.org>  Wed, 08 Nov 2023 10:23:13 +0100

python-pysam (0.21.0+ds-1) unstable; urgency=medium

  * New upstream version
  * Patches triage:
    - disable-tests-python3.11.patch removed: applied upstream
    - python3.11.patch removed: applied upstream
    - skip_test_remote.patch: forwarding not-needed
    - skip-test-on-32-bit.patch: provide dep3 header
    - clean_less patch: forwarding not-needed
  * d/copyright: bump copyright year.
  * d/rules: delete extra license files.
  * typos.patch: add; fix typos caught by lintian.

 -- Étienne Mollier <emollier@debian.org>  Fri, 23 Jun 2023 20:10:54 +0200

python-pysam (0.20.0+ds-3) unstable; urgency=medium

  * Team Upload.
  * Add patch to fix proper "SO" extension.

 -- Nilesh Patra <nilesh@debian.org>  Sat, 31 Dec 2022 22:26:09 +0530

python-pysam (0.20.0+ds-2) unstable; urgency=medium

  * disable-tests-python3.11.patch: add; work around test failure.
    Thanks to John Marshall and Graham Inggs (Closes: #1024425)
  * d/control: restore dependency on python3-all-dev.
  * d/control: restore autodep8-python autopkgtest.
  * Standards-Version: 4.6.2 (routine-update)

 -- Étienne Mollier <emollier@debian.org>  Tue, 27 Dec 2022 11:41:25 +0100

python-pysam (0.20.0+ds-1) unstable; urgency=medium

  * New upstream version
  * Update lintian override info format in d/python-pysam.lintian-overrides on
    line 4.
  * skip_test_remote.patch: refresh.
  * test-truncated-bam.patch: delete; applied upstream.
  * d/control: make build only depend on python3-dev.
  * d/control: disable autopkgtest-pkg-python due to missing python3.11
    support; classical autopkgtest is still active though.

 -- Étienne Mollier <emollier@debian.org>  Tue, 29 Nov 2022 21:55:48 +0100

python-pysam (0.19.1+ds-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.6.1 (routine-update)
  * Remove unused license definitions for LGPL-2.1+, BSD-3-clause.

  [ Étienne Mollier ]
  * test-truncated-bam.patch: added; fix test truncated BAM failure.
    Thanks to John Marshall
  * d/*.lintian-overrides: refresh mismatches.
  * d/control: add myself to uploaders.
  * d/*.lintian-overrides: remove unused overrides.

 -- Étienne Mollier <emollier@debian.org>  Sun, 02 Oct 2022 11:41:36 +0200

python-pysam (0.18.0+ds-1~exp2) experimental; urgency=medium

  * Bump Build-Depends: libhts-dev (>= 1.14~)
    Closes: #1001284

 -- Andreas Tille <tille@debian.org>  Wed, 08 Dec 2021 13:23:03 +0100

python-pysam (0.18.0+ds-1~exp1) experimental; urgency=medium

  * New upstream version
  * No tab in license text (routine-update)
  * Update renamed lintian tag names in lintian overrides.
  * Avoid explicitly specifying -Wl,--as-needed linker flag.
  * Remove constraints unnecessary since buster:
    + Build-Depends: Drop versioned constraint on bcftools, libhts-dev and
      samtools.
  * Drop outdated and unused tests

 -- Andreas Tille <tille@debian.org>  Tue, 07 Dec 2021 15:14:07 +0100

python-pysam (0.17.0+ds-2) unstable; urgency=medium

  * Team Upload.
  * Move from experimental to unstable
  * Skip failing test on 32-bit

 -- Nilesh Patra <nilesh@debian.org>  Fri, 15 Oct 2021 13:17:18 +0530

python-pysam (0.17.0+ds-1) experimental; urgency=medium

  * Team Upload.
  [ Andreas Tille ]
  * debhelper-compat 13 (routine-update)
  * Update copyright
  * Do not ignore test results via '|| true'
  * Exclude another test that is failing

  [ Nilesh Patra ]
  * New upstream version 0.17.0+ds
  * Standards version: 4.6.0
  * Bump watch file version to 4
  * Re-diff patches

 -- Nilesh Patra <nilesh@debian.org>  Fri, 15 Oct 2021 01:13:49 +0530

python-pysam (0.15.4+ds-3) unstable; urgency=medium

  * Remove Python2 package
    Closes: #938092
  * Remove unneeded debian/gbp.conf
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Submit.

 -- Andreas Tille <tille@debian.org>  Fri, 08 May 2020 20:27:35 +0200

python-pysam (0.15.4+ds-2) unstable; urgency=medium

  * Dont run unittests for python2 binary, to reduce pytest rdeps

 -- Sandro Tosi <morph@debian.org>  Mon, 13 Apr 2020 23:49:01 -0400

python-pysam (0.15.4+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * python-pysam-tests: Multi-Arch: foreign
  * Try to keep example_no_seq_in_header_null_bytes.bam from being deleted

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 23 Jan 2020 15:00:17 +0100

python-pysam (0.15.3+ds-5) unstable; urgency=medium

  [ Chris Lamb ]
  * make the build reproducible
    Closes: #948280

  [ Andreas Tille ]
  * Standards-Version: 4.4.1
  * debian/copyright: use spaces rather than tabs to start continuation
    lines.
  * Set upstream metadata fields: Bug-Database, Repository, Repository-
    Browse.

 -- Andreas Tille <tille@debian.org>  Mon, 06 Jan 2020 17:44:23 +0100

python-pysam (0.15.3+ds-4) unstable; urgency=medium

  * Team upload.
  * Replace missing hts_seek and hts_tell equivalents

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 05 Jan 2020 21:23:11 +0100

python-pysam (0.15.3+ds-3) unstable; urgency=medium

  * Team upload.
  * -docs: oops, don't try to ship nonexistent debian/tests/run-nose{3,}-tests

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 05 Jan 2020 08:01:33 +0100

python-pysam (0.15.3+ds-2) unstable; urgency=medium

  * Team upload.
  * new patch: Update deprecated samtools import test commands to samtools view
  * new patch: Update samtools + bcftools to v1.10
  * disable tests for now

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 04 Jan 2020 23:19:04 +0100

python-pysam (0.15.3+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream release. Not yet dropping py2 due to paleomix and pbsuite
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * Trim trailing whitespace.
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Repository.
  * New patch to remove symbols that were dropped in htslib 1.10:
    hts_utell, hts_useek (Closes: #947426)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Fri, 03 Jan 2020 21:25:33 +0100

# Older entries have been removed from this changelog.
# To read the complete changelog use `apt changelog python3-pysam`.
