# 5. Supplemental Material

## 5.1. Benchmark Files

All samples contain TMT labeled E.Coli cells on human background. The different Instruments (Orbitrap, Lumos, HF, HF-X) were run in DDA mode.

Machines:

HF :

  P0109699E18

  P0109699E19

  P0109699E22

HF-X :

  P0174319B7

  P0174319B8

  P0174319B9

Lumos:

  P0109699K8

  P0109699K9

  P0109699K10

OrbiElite:

  P81464G09

  P81464G10

Raw Files are accesible via PRIDE:

  <tba>

All benchmark files (igz) used in the paper can be found here:

  https://drive.google.com/drive/folders/1GbN0cAqiyAEljcuooYKkqW4rcKlOlc5n