Package: python3-pauvre
Source: python-pauvre
Version: 0.2.3-3
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 278
Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-scipy, python3-sklearn, python3:any, python3-tk
Section: python
Priority: optional
Homepage: https://github.com/conchoecia/pauvre
Description: QC and genome browser plotting Oxford Nanopore and PacBio long reads
 Pauvre is a plotting package designed for nanopore and PacBio long reads.
 .
 This package currently hosts four scripts for plotting and/or printing stats.
 .
  pauvre marginplot
     Takes a fastq file as input and outputs a marginal histogram with a
     heatmap.
  pauvre stats
     Takes a fastq file as input and prints out a table of stats, including
     how many basepairs/reads there are for a length/mean quality cutoff.
     This is also automagically called when using pauvre marginplot
  pauvre redwood
     Method of representing circular genomes. A redwood plot contains long
     reads as "rings" on the inside, a gene annotation "cambrium/phloem",
     and a RNAseq "bark". The input is .bam files for the long reads and
     RNAseq data, and a .gff file for the annotation.
  pauvre synteny
     Makes a synteny plot of circular genomes. Finds the most parsimonius
     rotation to display the synteny of all the input genomes with the
     fewest crossings-over. Input is one .gff file per circular genome
     and one directory of gene alignments.
