Package: python3-nanoget
Source: python-nanoget
Version: 1.19.3-1build1
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 52
Depends: python3-biopython, python3-numpy, python3-pandas (>= 2.0.0), python3-pysam, python3:any, python3-nanomath
Section: python
Priority: optional
Homepage: https://github.com/wdecoster/nanoget
Description: extract information from Oxford Nanopore sequencing data and alignments
 The Python3 module nanoget provides functions to extract useful metrics
 from Oxford Nanopore sequencing reads and alignments.
 .
 Data can be presented in the following formats, using the following functions:
 .
  * sorted bam file process_bam(bamfile, threads)
  * standard fastq file process_fastq_plain(fastqfile, 'threads')
  * fastq file with metadata from MinKNOW or Albacore
    process_fastq_rich(fastqfile)
  * sequencing_summary file generated by Albacore
    process_summary(sequencing_summary.txt, 'readtype')
 .
 Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
 returned as a pandas DataFrame with standardized headernames for
 convenient extraction. The functions perform logging while being called
 and extracting data.
