Package: python3-freecontact
Source: python-freecontact
Version: 1.1-10build4
Architecture: arm64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 273
Depends: python3 (<< 3.15), python3 (>= 3.14~), libboost-python1.90.0 (>= 1.90.0), libboost-python1.90.0-py314, libc6 (>= 2.32), libfreecontact0t64 (>= 1.0.21), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2)
Section: python
Priority: optional
Homepage: https://rostlab.org/owiki/index.php/FreeContact
Description: fast protein contact predictor - binding for Python3
 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the Python3 binding.
