csb	csb-module.html
csb.__package__	csb-module.html#__package__
csb.apps	csb.apps-module.html
csb.apps.__package__	csb.apps-module.html#__package__
csb.apps.bfit	csb.apps.bfit-module.html
csb.apps.bfit.main	csb.apps.bfit-module.html#main
csb.apps.bfit.__package__	csb.apps.bfit-module.html#__package__
csb.apps.bfite	csb.apps.bfite-module.html
csb.apps.bfite.main	csb.apps.bfite-module.html#main
csb.apps.bfite.__package__	csb.apps.bfite-module.html#__package__
csb.apps.buildhmm	csb.apps.buildhmm-module.html
csb.apps.buildhmm.__package__	csb.apps.buildhmm-module.html#__package__
csb.apps.buildhmm.main	csb.apps.buildhmm-module.html#main
csb.apps.csfrag	csb.apps.csfrag-module.html
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csb.apps.csfrag._task	csb.apps.csfrag-module.html#_task
csb.apps.csfrag.main	csb.apps.csfrag-module.html#main
csb.apps.embd	csb.apps.embd-module.html
csb.apps.embd.main	csb.apps.embd-module.html#main
csb.apps.embd.sqrt	csb.apps.embd-module.html#sqrt
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csb.apps.helloworld	csb.apps.helloworld-module.html
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csb.apps.helloworld.main	csb.apps.helloworld-module.html#main
csb.apps.hhfrag	csb.apps.hhfrag-module.html
csb.apps.hhfrag.main	csb.apps.hhfrag-module.html#main
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csb.apps.hhsearch	csb.apps.hhsearch-module.html
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csb.apps.hhsearch._task	csb.apps.hhsearch-module.html#_task
csb.apps.precision	csb.apps.precision-module.html
csb.apps.precision.main	csb.apps.precision-module.html#main
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csb.apps.precision.__package__	csb.apps.precision-module.html#__package__
csb.apps.promix	csb.apps.promix-module.html
csb.apps.promix.main	csb.apps.promix-module.html#main
csb.apps.promix.__package__	csb.apps.promix-module.html#__package__
csb.bio	csb.bio-module.html
csb.bio.__package__	csb.bio-module.html#__package__
csb.bio.fragments	csb.bio.fragments-module.html
csb.bio.fragments.__package__	csb.bio.fragments-module.html#__package__
csb.bio.fragments.RANDOM_RMSD	csb.bio.fragments-module.html#RANDOM_RMSD
csb.bio.fragments.rosetta	csb.bio.fragments.rosetta-module.html
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csb.bio.hmm	csb.bio.hmm-module.html
csb.bio.hmm.RELATIVE_SA	csb.bio.hmm-module.html#RELATIVE_SA
csb.bio.hmm.BACKGROUND	csb.bio.hmm-module.html#BACKGROUND
csb.bio.hmm.__package__	csb.bio.hmm-module.html#__package__
csb.bio.hmm.pseudocounts	csb.bio.hmm.pseudocounts-module.html
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csb.bio.hmm.pseudocounts.GONNET	csb.bio.hmm.pseudocounts-module.html#GONNET
csb.bio.io	csb.bio.io-module.html
csb.bio.io.StructureParser	csb.bio.io-module.html#StructureParser
csb.bio.io.__package__	csb.bio.io-module.html#__package__
csb.bio.io.clans	csb.bio.io.clans-module.html
csb.bio.io.clans.__package__	csb.bio.io.clans-module.html#__package__
csb.bio.io.cs	csb.bio.io.cs-module.html
csb.bio.io.cs.__package__	csb.bio.io.cs-module.html#__package__
csb.bio.io.dssp	csb.bio.io.dssp-module.html
csb.bio.io.dssp.get	csb.bio.io.dssp-module.html#get
csb.bio.io.dssp.__package__	csb.bio.io.dssp-module.html#__package__
csb.bio.io.fasta	csb.bio.io.fasta-module.html
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csb.bio.io.hhpred	csb.bio.io.hhpred-module.html
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csb.bio.io.mrc	csb.bio.io.mrc-module.html
csb.bio.io.mrc.__package__	csb.bio.io.mrc-module.html#__package__
csb.bio.io.noe	csb.bio.io.noe-module.html
csb.bio.io.noe.__package__	csb.bio.io.noe-module.html#__package__
csb.bio.io.procheck	csb.bio.io.procheck-module.html
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csb.bio.io.psipred	csb.bio.io.psipred-module.html
csb.bio.io.psipred.__package__	csb.bio.io.psipred-module.html#__package__
csb.bio.io.svg	csb.bio.io.svg-module.html
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csb.bio.io.vasco	csb.bio.io.vasco-module.html
csb.bio.io.vasco.__package__	csb.bio.io.vasco-module.html#__package__
csb.bio.io.whatif	csb.bio.io.whatif-module.html
csb.bio.io.whatif.__package__	csb.bio.io.whatif-module.html#__package__
csb.bio.io.wwpdb	csb.bio.io.wwpdb-module.html
csb.bio.io.wwpdb.StructureParser	csb.bio.io.wwpdb-module.html#StructureParser
csb.bio.io.wwpdb.find	csb.bio.io.wwpdb-module.html#find
csb.bio.io.wwpdb._parse_async	csb.bio.io.wwpdb-module.html#_parse_async
csb.bio.io.wwpdb.get	csb.bio.io.wwpdb-module.html#get
csb.bio.io.wwpdb.__package__	csb.bio.io.wwpdb-module.html#__package__
csb.bio.io.wwpdb.PDB_AMINOACIDS	csb.bio.io.wwpdb-module.html#PDB_AMINOACIDS
csb.bio.io.wwpdb.PDB_NUCLEOTIDES	csb.bio.io.wwpdb-module.html#PDB_NUCLEOTIDES
csb.bio.nmr	csb.bio.nmr-module.html
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csb.bio.sequence	csb.bio.sequence-module.html
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csb.bio.sequence.alignment	csb.bio.sequence.alignment-module.html
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csb.bio.structure	csb.bio.structure-module.html
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csb.bio.utils	csb.bio.utils-module.html
csb.bio.utils.wrmsd	csb.bio.utils-module.html#wrmsd
csb.bio.utils.rad	csb.bio.utils-module.html#rad
csb.bio.utils.probabilistic_fit	csb.bio.utils-module.html#probabilistic_fit
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csb.bio.utils.fit_transform	csb.bio.utils-module.html#fit_transform
csb.bio.utils.deg	csb.bio.utils-module.html#deg
csb.build	csb.build-module.html
csb.build.__package__	csb.build-module.html#__package__
csb.build.main	csb.build-module.html#main
csb.build.ROOT	csb.build-module.html#ROOT
csb.build.PARENT	csb.build-module.html#PARENT
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csb.core	csb.core-module.html
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csb.io	csb.io-module.html
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csb.io.NEWLINE	csb.io-module.html#NEWLINE
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csb.io.tsv	csb.io.tsv-module.html
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csb.numeric	csb.numeric-module.html
csb.numeric.trim	csb.numeric-module.html#trim
csb.numeric.euler_angles	csb.numeric-module.html#euler_angles
csb.numeric.rotation_matrix	csb.numeric-module.html#rotation_matrix
csb.numeric.sign	csb.numeric-module.html#sign
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csb.numeric.from_polar	csb.numeric-module.html#from_polar
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csb.numeric.psi	csb.numeric-module.html#psi
csb.numeric.trapezoidal_2d	csb.numeric-module.html#trapezoidal_2d
csb.numeric.from_polar3d	csb.numeric-module.html#from_polar3d
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csb.numeric.euler	csb.numeric-module.html#euler
csb.numeric.polar	csb.numeric-module.html#polar
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csb.numeric.norm	csb.numeric-module.html#norm
csb.numeric.EXP_MAX	csb.numeric-module.html#EXP_MAX
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csb.numeric.log	csb.numeric-module.html#log
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csb.numeric.polar3d	csb.numeric-module.html#polar3d
csb.numeric.LOG_MAX	csb.numeric-module.html#LOG_MAX
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csb.numeric.correlate	csb.numeric-module.html#correlate
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csb.numeric.log_trapezoidal	csb.numeric-module.html#log_trapezoidal
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csb.numeric.integrators	csb.numeric.integrators-module.html
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csb.statistics	csb.statistics-module.html
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csb.statistics.maxent	csb.statistics.maxent-module.html
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csb.statistics.mixtures	csb.statistics.mixtures-module.html
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csb.statistics.pdf.pi	csb.statistics.pdf-module.html#pi
csb.statistics.pdf.parameterized	csb.statistics.pdf.parameterized-module.html
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csb.statistics.rand	csb.statistics.rand-module.html
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csb.statistics.rand.sample_from_histogram	csb.statistics.rand-module.html#sample_from_histogram
csb.statistics.samplers	csb.statistics.samplers-module.html
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csb.statistics.samplers.mc	csb.statistics.samplers.mc-module.html
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csb.statistics.samplers.mc.propagators	csb.statistics.samplers.mc.propagators-module.html
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csb.statistics.samplers.mc.singlechain	csb.statistics.samplers.mc.singlechain-module.html
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csb.statmech	csb.statmech-module.html
csb.statmech.__package__	csb.statmech-module.html#__package__
csb.statmech.ensembles	csb.statmech.ensembles-module.html
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csb.statmech.wham	csb.statmech.wham-module.html
csb.statmech.wham.__package__	csb.statmech.wham-module.html#__package__
csb.test	csb.test-module.html
csb.test.skip	csb.test-module.html#skip
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csb.apps.AppExit	csb.apps.AppExit-class.html
csb.apps.AppExit.__init__	csb.apps.AppExit-class.html#__init__
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csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.Application.log	csb.apps.Application-class.html#log
csb.apps.Application.__abstractmethods__	csb.apps.Application-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.Application.main	csb.apps.Application-class.html#main
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.ArgHandler	csb.apps.ArgHandler-class.html
csb.apps.ArgHandler.help	csb.apps.ArgHandler-class.html#help
csb.apps.ArgHandler.parser	csb.apps.ArgHandler-class.html#parser
csb.apps.ArgHandler._add	csb.apps.ArgHandler-class.html#_add
csb.apps.ArgHandler.add_positional_argument	csb.apps.ArgHandler-class.html#add_positional_argument
csb.apps.ArgHandler.Type	csb.apps.ArgHandler.Type-class.html
csb.apps.ArgHandler.__init__	csb.apps.ArgHandler-class.html#__init__
csb.apps.ArgHandler.usage	csb.apps.ArgHandler-class.html#usage
csb.apps.ArgHandler.add_array_argument	csb.apps.ArgHandler-class.html#add_array_argument
csb.apps.ArgHandler.add_scalar_option	csb.apps.ArgHandler-class.html#add_scalar_option
csb.apps.ArgHandler._format_help	csb.apps.ArgHandler-class.html#_format_help
csb.apps.ArgHandler.parse	csb.apps.ArgHandler-class.html#parse
csb.apps.ArgHandler.SHORT_PREFIX	csb.apps.ArgHandler-class.html#SHORT_PREFIX
csb.apps.ArgHandler.add_boolean_option	csb.apps.ArgHandler-class.html#add_boolean_option
csb.apps.ArgHandler.add_array_option	csb.apps.ArgHandler-class.html#add_array_option
csb.apps.ArgHandler.LONG_PREFIX	csb.apps.ArgHandler-class.html#LONG_PREFIX
csb.apps.ArgHandler.Type	csb.apps.ArgHandler.Type-class.html
csb.apps.ArgHandler.Type.NAMED	csb.apps.ArgHandler.Type-class.html#NAMED
csb.apps.ArgHandler.Type.POSITIONAL	csb.apps.ArgHandler.Type-class.html#POSITIONAL
csb.apps.ExitCodes	csb.apps.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.bfit.AppRunner	csb.apps.bfit.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.bfit.AppRunner.__abstractmethods__	csb.apps.bfit.AppRunner-class.html#__abstractmethods__
csb.apps.bfit.AppRunner.command_line	csb.apps.bfit.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.AppRunner.initapp	csb.apps.AppRunner-class.html#initapp
csb.apps.bfit.AppRunner.target	csb.apps.bfit.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.bfit.BFitApp	csb.apps.bfit.BFitApp-class.html
csb.apps.Application.__metaclass__	abc.ABCMeta-class.html
csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.Application.log	csb.apps.Application-class.html#log
csb.apps.bfit.BFitApp.__abstractmethods__	csb.apps.bfit.BFitApp-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.bfit.BFitApp.main	csb.apps.bfit.BFitApp-class.html#main
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.bfit.ExitCodes	csb.apps.bfit.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.bfit.ExitCodes.IO_ERROR	csb.apps.bfit.ExitCodes-class.html#IO_ERROR
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.bfit.ExitCodes.INPUT_ERROR	csb.apps.bfit.ExitCodes-class.html#INPUT_ERROR
csb.apps.bfite.AppRunner	csb.apps.bfite.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.bfite.AppRunner.__abstractmethods__	csb.apps.bfite.AppRunner-class.html#__abstractmethods__
csb.apps.bfite.AppRunner.command_line	csb.apps.bfite.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.AppRunner.initapp	csb.apps.AppRunner-class.html#initapp
csb.apps.bfite.AppRunner.target	csb.apps.bfite.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.bfite.BFitApp	csb.apps.bfite.BFitApp-class.html
csb.apps.Application.__metaclass__	abc.ABCMeta-class.html
csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.Application.log	csb.apps.Application-class.html#log
csb.apps.bfite.BFitApp.__abstractmethods__	csb.apps.bfite.BFitApp-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.bfite.BFitApp.main	csb.apps.bfite.BFitApp-class.html#main
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.bfite.ExitCodes	csb.apps.bfite.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.bfite.ExitCodes.IO_ERROR	csb.apps.bfite.ExitCodes-class.html#IO_ERROR
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.buildhmm.AppRunner	csb.apps.buildhmm.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.buildhmm.AppRunner.__abstractmethods__	csb.apps.buildhmm.AppRunner-class.html#__abstractmethods__
csb.apps.buildhmm.AppRunner.command_line	csb.apps.buildhmm.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.AppRunner.initapp	csb.apps.AppRunner-class.html#initapp
csb.apps.buildhmm.AppRunner.target	csb.apps.buildhmm.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.buildhmm.BuildArgError	csb.apps.buildhmm.BuildArgError-class.html
csb.apps.buildhmm.BuildError	csb.apps.buildhmm.BuildError-class.html
csb.apps.buildhmm.BuildIOError	csb.apps.buildhmm.BuildIOError-class.html
csb.apps.buildhmm.BuildProfileApp	csb.apps.buildhmm.BuildProfileApp-class.html
csb.apps.Application.__metaclass__	abc.ABCMeta-class.html
csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.Application.log	csb.apps.Application-class.html#log
csb.apps.buildhmm.BuildProfileApp.__abstractmethods__	csb.apps.buildhmm.BuildProfileApp-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.buildhmm.BuildProfileApp.main	csb.apps.buildhmm.BuildProfileApp-class.html#main
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.buildhmm.ExitCodes	csb.apps.buildhmm.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.buildhmm.ExitCodes.IO_ERROR	csb.apps.buildhmm.ExitCodes-class.html#IO_ERROR
csb.apps.buildhmm.ExitCodes.INVALID_DATA	csb.apps.buildhmm.ExitCodes-class.html#INVALID_DATA
csb.apps.buildhmm.ExitCodes.EXT_TOOL_FAILURE	csb.apps.buildhmm.ExitCodes-class.html#EXT_TOOL_FAILURE
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.buildhmm.FASTAProfileBuilder	csb.apps.buildhmm.FASTAProfileBuilder-class.html
csb.apps.buildhmm.ProfileBuilder.__metaclass__	abc.ABCMeta-class.html
csb.apps.buildhmm.ProfileBuilder.TRANSITION_PSEUDO	csb.apps.buildhmm.ProfileBuilder-class.html#TRANSITION_PSEUDO
csb.apps.buildhmm.ProfileBuilder._abc_negative_cache	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_negative_cache
csb.apps.buildhmm.ProfileBuilder.calibrate_hmm	csb.apps.buildhmm.ProfileBuilder-class.html#calibrate_hmm
csb.apps.buildhmm.ProfileBuilder.make_hmm	csb.apps.buildhmm.ProfileBuilder-class.html#make_hmm
csb.apps.buildhmm.ProfileBuilder.__init__	csb.apps.buildhmm.ProfileBuilder-class.html#__init__
csb.apps.buildhmm.ProfileBuilder._abc_cache	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_cache
csb.apps.buildhmm.ProfileBuilder.create	csb.apps.buildhmm.ProfileBuilder-class.html#create
csb.apps.buildhmm.FASTAProfileBuilder.__abstractmethods__	csb.apps.buildhmm.FASTAProfileBuilder-class.html#__abstractmethods__
csb.apps.buildhmm.ProfileBuilder.run	csb.apps.buildhmm.ProfileBuilder-class.html#run
csb.apps.buildhmm.ProfileBuilder.target_id	csb.apps.buildhmm.ProfileBuilder-class.html#target_id
csb.apps.buildhmm.ProfileBuilder.build_alignment	csb.apps.buildhmm.ProfileBuilder-class.html#build_alignment
csb.apps.buildhmm.ProfileBuilder.EMISSION_PSEUDO	csb.apps.buildhmm.ProfileBuilder-class.html#EMISSION_PSEUDO
csb.apps.buildhmm.FASTAProfileBuilder.configure_input	csb.apps.buildhmm.FASTAProfileBuilder-class.html#configure_input
csb.apps.buildhmm.ProfileBuilder._abc_negative_cache_version	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_negative_cache_version
csb.apps.buildhmm.ProfileBuilder._abc_registry	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_registry
csb.apps.buildhmm.NoOutputError	csb.apps.buildhmm.NoOutputError-class.html
csb.apps.buildhmm.NoOutputError.__init__	csb.apps.buildhmm.NoOutputError-class.html#__init__
csb.apps.buildhmm.PDBProfileBuilder	csb.apps.buildhmm.PDBProfileBuilder-class.html
csb.apps.buildhmm.ProfileBuilder.__metaclass__	abc.ABCMeta-class.html
csb.apps.buildhmm.ProfileBuilder.TRANSITION_PSEUDO	csb.apps.buildhmm.ProfileBuilder-class.html#TRANSITION_PSEUDO
csb.apps.buildhmm.ProfileBuilder._abc_negative_cache	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_negative_cache
csb.apps.buildhmm.ProfileBuilder.calibrate_hmm	csb.apps.buildhmm.ProfileBuilder-class.html#calibrate_hmm
csb.apps.buildhmm.PDBProfileBuilder.make_hmm	csb.apps.buildhmm.PDBProfileBuilder-class.html#make_hmm
csb.apps.buildhmm.ProfileBuilder.__init__	csb.apps.buildhmm.ProfileBuilder-class.html#__init__
csb.apps.buildhmm.ProfileBuilder._abc_cache	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_cache
csb.apps.buildhmm.ProfileBuilder.create	csb.apps.buildhmm.ProfileBuilder-class.html#create
csb.apps.buildhmm.PDBProfileBuilder.__abstractmethods__	csb.apps.buildhmm.PDBProfileBuilder-class.html#__abstractmethods__
csb.apps.buildhmm.PDBProfileBuilder.format_structure	csb.apps.buildhmm.PDBProfileBuilder-class.html#format_structure
csb.apps.buildhmm.ProfileBuilder.run	csb.apps.buildhmm.ProfileBuilder-class.html#run
csb.apps.buildhmm.ProfileBuilder.target_id	csb.apps.buildhmm.ProfileBuilder-class.html#target_id
csb.apps.buildhmm.ProfileBuilder.build_alignment	csb.apps.buildhmm.ProfileBuilder-class.html#build_alignment
csb.apps.buildhmm.ProfileBuilder.EMISSION_PSEUDO	csb.apps.buildhmm.ProfileBuilder-class.html#EMISSION_PSEUDO
csb.apps.buildhmm.PDBProfileBuilder.configure_input	csb.apps.buildhmm.PDBProfileBuilder-class.html#configure_input
csb.apps.buildhmm.ProfileBuilder._abc_negative_cache_version	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_negative_cache_version
csb.apps.buildhmm.ProfileBuilder._abc_registry	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_registry
csb.apps.buildhmm.ProfileBuilder	csb.apps.buildhmm.ProfileBuilder-class.html
csb.apps.buildhmm.ProfileBuilder.__metaclass__	abc.ABCMeta-class.html
csb.apps.buildhmm.ProfileBuilder.TRANSITION_PSEUDO	csb.apps.buildhmm.ProfileBuilder-class.html#TRANSITION_PSEUDO
csb.apps.buildhmm.ProfileBuilder._abc_negative_cache	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_negative_cache
csb.apps.buildhmm.ProfileBuilder.calibrate_hmm	csb.apps.buildhmm.ProfileBuilder-class.html#calibrate_hmm
csb.apps.buildhmm.ProfileBuilder.make_hmm	csb.apps.buildhmm.ProfileBuilder-class.html#make_hmm
csb.apps.buildhmm.ProfileBuilder.__init__	csb.apps.buildhmm.ProfileBuilder-class.html#__init__
csb.apps.buildhmm.ProfileBuilder._abc_cache	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_cache
csb.apps.buildhmm.ProfileBuilder.create	csb.apps.buildhmm.ProfileBuilder-class.html#create
csb.apps.buildhmm.ProfileBuilder.__abstractmethods__	csb.apps.buildhmm.ProfileBuilder-class.html#__abstractmethods__
csb.apps.buildhmm.ProfileBuilder.run	csb.apps.buildhmm.ProfileBuilder-class.html#run
csb.apps.buildhmm.ProfileBuilder.target_id	csb.apps.buildhmm.ProfileBuilder-class.html#target_id
csb.apps.buildhmm.ProfileBuilder.build_alignment	csb.apps.buildhmm.ProfileBuilder-class.html#build_alignment
csb.apps.buildhmm.ProfileBuilder.EMISSION_PSEUDO	csb.apps.buildhmm.ProfileBuilder-class.html#EMISSION_PSEUDO
csb.apps.buildhmm.ProfileBuilder.configure_input	csb.apps.buildhmm.ProfileBuilder-class.html#configure_input
csb.apps.buildhmm.ProfileBuilder._abc_negative_cache_version	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_negative_cache_version
csb.apps.buildhmm.ProfileBuilder._abc_registry	csb.apps.buildhmm.ProfileBuilder-class.html#_abc_registry
csb.apps.csfrag.AppRunner	csb.apps.csfrag.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.csfrag.AppRunner.__abstractmethods__	csb.apps.csfrag.AppRunner-class.html#__abstractmethods__
csb.apps.csfrag.AppRunner.command_line	csb.apps.csfrag.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.AppRunner.initapp	csb.apps.AppRunner-class.html#initapp
csb.apps.csfrag.AppRunner.target	csb.apps.csfrag.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.csfrag.ArgumentError	csb.apps.csfrag.ArgumentError-class.html
csb.apps.csfrag.ArgumentIOError	csb.apps.csfrag.ArgumentIOError-class.html
csb.apps.csfrag.CSfrag	csb.apps.csfrag.CSfrag-class.html
csb.apps.csfrag.CSfrag.log	csb.apps.csfrag.CSfrag-class.html#log
csb.apps.csfrag.CSfrag.database	csb.apps.csfrag.CSfrag-class.html#database
csb.apps.csfrag.CSfrag.extract_fragments	csb.apps.csfrag.CSfrag-class.html#extract_fragments
csb.apps.csfrag.CSfrag.window	csb.apps.csfrag.CSfrag-class.html#window
csb.apps.csfrag.CSfrag.build_filtered_map	csb.apps.csfrag.CSfrag-class.html#build_filtered_map
csb.apps.csfrag.CSfrag.query	csb.apps.csfrag.CSfrag-class.html#query
csb.apps.csfrag.CSfrag.build_fragment_map	csb.apps.csfrag.CSfrag-class.html#build_fragment_map
csb.apps.csfrag.CSfrag.__init__	csb.apps.csfrag.CSfrag-class.html#__init__
csb.apps.csfrag.CSfragApp	csb.apps.csfrag.CSfragApp-class.html
csb.apps.Application.__metaclass__	abc.ABCMeta-class.html
csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.csfrag.CSfragApp.log	csb.apps.csfrag.CSfragApp-class.html#log
csb.apps.csfrag.CSfragApp.__abstractmethods__	csb.apps.csfrag.CSfragApp-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.csfrag.CSfragApp.main	csb.apps.csfrag.CSfragApp-class.html#main
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.csfrag.ExitCodes	csb.apps.csfrag.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.csfrag.ExitCodes.NO_OUTPUT	csb.apps.csfrag.ExitCodes-class.html#NO_OUTPUT
csb.apps.csfrag.ExitCodes.IO_ERROR	csb.apps.csfrag.ExitCodes-class.html#IO_ERROR
csb.apps.csfrag.ExitCodes.INVALID_DATA	csb.apps.csfrag.ExitCodes-class.html#INVALID_DATA
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.csfrag.InvalidOperationError	csb.apps.csfrag.InvalidOperationError-class.html
csb.apps.csfrag.MatchInfo	csb.apps.csfrag.MatchInfo-class.html
csb.apps.csfrag.MatchInfo.__str__	csb.apps.csfrag.MatchInfo-class.html#__str__
csb.apps.csfrag.MatchInfo.__cmp__	csb.apps.csfrag.MatchInfo-class.html#__cmp__
csb.apps.csfrag.MatchInfo.__init__	csb.apps.csfrag.MatchInfo-class.html#__init__
csb.apps.csfrag.MatchTable	csb.apps.csfrag.MatchTable-class.html
csb.apps.csfrag.MatchTable.__getitem__	csb.apps.csfrag.MatchTable-class.html#__getitem__
csb.apps.csfrag.MatchTable.add	csb.apps.csfrag.MatchTable-class.html#add
csb.apps.csfrag.MatchTable.by_source	csb.apps.csfrag.MatchTable-class.html#by_source
csb.apps.csfrag.MatchTable.__iter__	csb.apps.csfrag.MatchTable-class.html#__iter__
csb.apps.csfrag.MatchTable.__init__	csb.apps.csfrag.MatchTable-class.html#__init__
csb.apps.csfrag.ScoringHelper	csb.apps.csfrag.ScoringHelper-class.html
csb.apps.csfrag.ScoringHelper.offsets	csb.apps.csfrag.ScoringHelper-class.html#offsets
csb.apps.csfrag.ScoringHelper.window	csb.apps.csfrag.ScoringHelper-class.html#window
csb.apps.csfrag.ScoringHelper.score	csb.apps.csfrag.ScoringHelper-class.html#score
csb.apps.csfrag.ScoringHelper.__init__	csb.apps.csfrag.ScoringHelper-class.html#__init__
csb.apps.csfrag.SecondaryShiftConverter	csb.apps.csfrag.SecondaryShiftConverter-class.html
csb.apps.csfrag.SecondaryShiftConverter.convert	csb.apps.csfrag.SecondaryShiftConverter-class.html#convert
csb.apps.csfrag.SecondaryShiftReader	csb.apps.csfrag.SecondaryShiftReader-class.html
csb.apps.csfrag.SecondaryShiftReader.DB	csb.apps.csfrag.SecondaryShiftReader-class.html#DB
csb.apps.csfrag.SecondaryShiftReader.load_database	csb.apps.csfrag.SecondaryShiftReader-class.html#load_database
csb.apps.csfrag.SecondaryShiftReader.read_shifts	csb.apps.csfrag.SecondaryShiftReader-class.html#read_shifts
csb.apps.embd.AppRunner	csb.apps.embd.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.embd.AppRunner.__abstractmethods__	csb.apps.embd.AppRunner-class.html#__abstractmethods__
csb.apps.embd.AppRunner.command_line	csb.apps.embd.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.AppRunner.initapp	csb.apps.AppRunner-class.html#initapp
csb.apps.embd.AppRunner.target	csb.apps.embd.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.embd.Deconvolution	csb.apps.embd.Deconvolution-class.html
csb.apps.embd.Deconvolution._normalize_psf	csb.apps.embd.Deconvolution-class.html#_normalize_psf
csb.apps.embd.Deconvolution.eval_loss	csb.apps.embd.Deconvolution-class.html#eval_loss
csb.apps.embd.Deconvolution.__init__	csb.apps.embd.Deconvolution-class.html#__init__
csb.apps.embd.Deconvolution.beta_x	csb.apps.embd.Deconvolution-class.html#beta_x
csb.apps.embd.Deconvolution.calculate_image	csb.apps.embd.Deconvolution-class.html#calculate_image
csb.apps.embd.Deconvolution.eval_corr	csb.apps.embd.Deconvolution-class.html#eval_corr
csb.apps.embd.Deconvolution.beta_f	csb.apps.embd.Deconvolution-class.html#beta_f
csb.apps.embd.Deconvolution.run	csb.apps.embd.Deconvolution-class.html#run
csb.apps.embd.Deconvolution._calculate_image	csb.apps.embd.Deconvolution-class.html#_calculate_image
csb.apps.embd.Deconvolution.run_once	csb.apps.embd.Deconvolution-class.html#run_once
csb.apps.embd.Deconvolution._update_psf	csb.apps.embd.Deconvolution-class.html#_update_psf
csb.apps.embd.Deconvolution.data	csb.apps.embd.Deconvolution-class.html#data
csb.apps.embd.Deconvolution.loss	csb.apps.embd.Deconvolution-class.html#loss
csb.apps.embd.Deconvolution._initialize	csb.apps.embd.Deconvolution-class.html#_initialize
csb.apps.embd.Deconvolution._update_map	csb.apps.embd.Deconvolution-class.html#_update_map
csb.apps.embd.Deconvolution.correlation	csb.apps.embd.Deconvolution-class.html#correlation
csb.apps.embd.DeconvolutionApp	csb.apps.embd.DeconvolutionApp-class.html
csb.apps.Application.__metaclass__	abc.ABCMeta-class.html
csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.embd.DeconvolutionApp.log	csb.apps.embd.DeconvolutionApp-class.html#log
csb.apps.embd.DeconvolutionApp.__abstractmethods__	csb.apps.embd.DeconvolutionApp-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.embd.DeconvolutionApp.main	csb.apps.embd.DeconvolutionApp-class.html#main
csb.apps.embd.DeconvolutionApp.run	csb.apps.embd.DeconvolutionApp-class.html#run
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.embd.ExitCodes	csb.apps.embd.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.embd.ExitCodes.IO_ERROR	csb.apps.embd.ExitCodes-class.html#IO_ERROR
csb.apps.embd.ExitCodes.ARGUMENT_ERROR	csb.apps.embd.ExitCodes-class.html#ARGUMENT_ERROR
csb.apps.embd.ExitCodes.INVALID_DATA	csb.apps.embd.ExitCodes-class.html#INVALID_DATA
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.embd.OutputPathBuilder	csb.apps.embd.OutputPathBuilder-class.html
csb.apps.embd.OutputPathBuilder.filename	csb.apps.embd.OutputPathBuilder-class.html#filename
csb.apps.embd.OutputPathBuilder.fullpath	csb.apps.embd.OutputPathBuilder-class.html#fullpath
csb.apps.embd.OutputPathBuilder.__init__	csb.apps.embd.OutputPathBuilder-class.html#__init__
csb.apps.embd.Util	csb.apps.embd.Util-class.html
csb.apps.embd.Util.corr	csb.apps.embd.Util-class.html#corr
csb.apps.helloworld.AppRunner	csb.apps.helloworld.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.helloworld.AppRunner.__abstractmethods__	csb.apps.helloworld.AppRunner-class.html#__abstractmethods__
csb.apps.helloworld.AppRunner.command_line	csb.apps.helloworld.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.helloworld.AppRunner.initapp	csb.apps.helloworld.AppRunner-class.html#initapp
csb.apps.helloworld.AppRunner.target	csb.apps.helloworld.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.helloworld.ExitCodes	csb.apps.helloworld.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.helloworld.ExitCodes.BAD_TEXT	csb.apps.helloworld.ExitCodes-class.html#BAD_TEXT
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.helloworld.HelloWorldApp	csb.apps.helloworld.HelloWorldApp-class.html
csb.apps.Application.__metaclass__	abc.ABCMeta-class.html
csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.Application.log	csb.apps.Application-class.html#log
csb.apps.helloworld.HelloWorldApp.__abstractmethods__	csb.apps.helloworld.HelloWorldApp-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.helloworld.HelloWorldApp.main	csb.apps.helloworld.HelloWorldApp-class.html#main
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.hhfrag.AppRunner	csb.apps.hhfrag.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.hhfrag.AppRunner.__abstractmethods__	csb.apps.hhfrag.AppRunner-class.html#__abstractmethods__
csb.apps.hhfrag.AppRunner.command_line	csb.apps.hhfrag.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.AppRunner.initapp	csb.apps.AppRunner-class.html#initapp
csb.apps.hhfrag.AppRunner.target	csb.apps.hhfrag.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.hhfrag.ArgumentError	csb.apps.hhfrag.ArgumentError-class.html
csb.apps.hhfrag.ArgumentIOError	csb.apps.hhfrag.ArgumentIOError-class.html
csb.apps.hhfrag.ExitCodes	csb.apps.hhfrag.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.hhfrag.ExitCodes.NO_OUTPUT	csb.apps.hhfrag.ExitCodes-class.html#NO_OUTPUT
csb.apps.hhfrag.ExitCodes.IO_ERROR	csb.apps.hhfrag.ExitCodes-class.html#IO_ERROR
csb.apps.hhfrag.ExitCodes.INVALID_DATA	csb.apps.hhfrag.ExitCodes-class.html#INVALID_DATA
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.hhfrag.ExitCodes.HHSEARCH_FAILURE	csb.apps.hhfrag.ExitCodes-class.html#HHSEARCH_FAILURE
csb.apps.hhfrag.HHfrag	csb.apps.hhfrag.HHfrag-class.html
csb.apps.hhfrag.HHfrag.extract_fragments	csb.apps.hhfrag.HHfrag-class.html#extract_fragments
csb.apps.hhfrag.HHfrag.build_hybrid_filtered_map	csb.apps.hhfrag.HHfrag-class.html#build_hybrid_filtered_map
csb.apps.hhfrag.HHfrag.build_combined_map	csb.apps.hhfrag.HHfrag-class.html#build_combined_map
csb.apps.hhfrag.HHfrag.query	csb.apps.hhfrag.HHfrag-class.html#query
csb.apps.hhfrag.HHfrag.__init__	csb.apps.hhfrag.HHfrag-class.html#__init__
csb.apps.hhfrag.HHfrag._plot_lengths	csb.apps.hhfrag.HHfrag-class.html#_plot_lengths
csb.apps.hhfrag.HHfrag.slice_query	csb.apps.hhfrag.HHfrag-class.html#slice_query
csb.apps.hhfrag.HHfrag.pdbs25	csb.apps.hhfrag.HHfrag-class.html#pdbs25
csb.apps.hhfrag.HHfrag.PDBS	csb.apps.hhfrag.HHfrag-class.html#PDBS
csb.apps.hhfrag.HHfrag.aligner	csb.apps.hhfrag.HHfrag-class.html#aligner
csb.apps.hhfrag.HHfrag._filter_event_handler	csb.apps.hhfrag.HHfrag-class.html#_filter_event_handler
csb.apps.hhfrag.HHfrag.log	csb.apps.hhfrag.HHfrag-class.html#log
csb.apps.hhfrag.HHfrag._merge_event_handler	csb.apps.hhfrag.HHfrag-class.html#_merge_event_handler
csb.apps.hhfrag.HHfrag.database	csb.apps.hhfrag.HHfrag-class.html#database
csb.apps.hhfrag.HHfrag.build_filtered_map	csb.apps.hhfrag.HHfrag-class.html#build_filtered_map
csb.apps.hhfrag.HHfrag.build_fragment_map	csb.apps.hhfrag.HHfrag-class.html#build_fragment_map
csb.apps.hhfrag.HHfragApp	csb.apps.hhfrag.HHfragApp-class.html
csb.apps.Application.__metaclass__	abc.ABCMeta-class.html
csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.hhfrag.HHfragApp.log	csb.apps.hhfrag.HHfragApp-class.html#log
csb.apps.hhfrag.HHfragApp.__abstractmethods__	csb.apps.hhfrag.HHfragApp-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.hhfrag.HHfragApp.main	csb.apps.hhfrag.HHfragApp-class.html#main
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.hhfrag.InvalidOperationError	csb.apps.hhfrag.InvalidOperationError-class.html
csb.apps.hhfrag.PredictionBuilder	csb.apps.hhfrag.PredictionBuilder-class.html
csb.apps.hhfrag.PredictionBuilder.product	csb.apps.hhfrag.PredictionBuilder-class.html#product
csb.apps.hhfrag.PredictionBuilder.addall	csb.apps.hhfrag.PredictionBuilder-class.html#addall
csb.apps.hhfrag.PredictionBuilder.create	csb.apps.hhfrag.PredictionBuilder-class.html#create
csb.apps.hhfrag.PredictionBuilder.HEADER	csb.apps.hhfrag.PredictionBuilder-class.html#HEADER
csb.apps.hhfrag.PredictionBuilder.add	csb.apps.hhfrag.PredictionBuilder-class.html#add
csb.apps.hhfrag.PredictionBuilder.format_angle	csb.apps.hhfrag.PredictionBuilder-class.html#format_angle
csb.apps.hhfrag.PredictionBuilder.__init__	csb.apps.hhfrag.PredictionBuilder-class.html#__init__
csb.apps.hhfrag.SliceContext	csb.apps.hhfrag.SliceContext-class.html
csb.apps.hhfrag.SliceContext.hits	csb.apps.hhfrag.SliceContext-class.html#hits
csb.apps.hhfrag.SliceContext.recurrence	csb.apps.hhfrag.SliceContext-class.html#recurrence
csb.apps.hhfrag.SliceContext.length	csb.apps.hhfrag.SliceContext-class.html#length
csb.apps.hhsearch.Context.result	csb.apps.hhsearch.Context-class.html#result
csb.apps.hhsearch.Context.query	csb.apps.hhsearch.Context-class.html#query
csb.apps.hhfrag.SliceContext.__lt__	csb.apps.hhfrag.SliceContext-class.html#__lt__
csb.apps.hhfrag.SliceContext.__init__	csb.apps.hhfrag.SliceContext-class.html#__init__
csb.apps.hhsearch.AppRunner	csb.apps.hhsearch.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.hhsearch.AppRunner.__abstractmethods__	csb.apps.hhsearch.AppRunner-class.html#__abstractmethods__
csb.apps.hhsearch.AppRunner.command_line	csb.apps.hhsearch.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.AppRunner.initapp	csb.apps.AppRunner-class.html#initapp
csb.apps.hhsearch.AppRunner.target	csb.apps.hhsearch.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.hhsearch.Context	csb.apps.hhsearch.Context-class.html
csb.apps.hhsearch.Context.result	csb.apps.hhsearch.Context-class.html#result
csb.apps.hhsearch.Context.query	csb.apps.hhsearch.Context-class.html#query
csb.apps.hhsearch.Context.__init__	csb.apps.hhsearch.Context-class.html#__init__
csb.apps.hhsearch.ExitCodes	csb.apps.hhsearch.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.ExitCodes.USAGE_ERROR	csb.apps.ExitCodes-class.html#USAGE_ERROR
csb.apps.hhsearch.ExitCodes.IO_ERROR	csb.apps.hhsearch.ExitCodes-class.html#IO_ERROR
csb.apps.hhsearch.ExitCodes.INVALID_DATA	csb.apps.hhsearch.ExitCodes-class.html#INVALID_DATA
csb.apps.hhsearch.ExitCodes.EXT_TOOL_FAILURE	csb.apps.hhsearch.ExitCodes-class.html#EXT_TOOL_FAILURE
csb.apps.ExitCodes.CLEAN	csb.apps.ExitCodes-class.html#CLEAN
csb.apps.hhsearch.HHTask	csb.apps.hhsearch.HHTask-class.html
csb.apps.hhsearch.Context.result	csb.apps.hhsearch.Context-class.html#result
csb.apps.hhsearch.Context.query	csb.apps.hhsearch.Context-class.html#query
csb.apps.hhsearch.HHTask.__init__	csb.apps.hhsearch.HHTask-class.html#__init__
csb.apps.hhsearch.HHsearch	csb.apps.hhsearch.HHsearch-class.html
csb.apps.hhsearch.HHsearch.program	csb.apps.hhsearch.HHsearch-class.html#program
csb.apps.hhsearch.HHsearch.parser	csb.apps.hhsearch.HHsearch-class.html#parser
csb.apps.hhsearch.HHsearch.mac_threshold	csb.apps.hhsearch.HHsearch-class.html#mac_threshold
csb.apps.hhsearch.HHsearch.__init__	csb.apps.hhsearch.HHsearch-class.html#__init__
csb.apps.hhsearch.HHsearch.min_probability	csb.apps.hhsearch.HHsearch-class.html#min_probability
csb.apps.hhsearch.HHsearch.runmany	csb.apps.hhsearch.HHsearch-class.html#runmany
csb.apps.hhsearch.HHsearch.max_evalue	csb.apps.hhsearch.HHsearch-class.html#max_evalue
csb.apps.hhsearch.HHsearch.max_alignments	csb.apps.hhsearch.HHsearch-class.html#max_alignments
csb.apps.hhsearch.HHsearch.run	csb.apps.hhsearch.HHsearch-class.html#run
csb.apps.hhsearch.HHsearch.db	csb.apps.hhsearch.HHsearch-class.html#db
csb.apps.hhsearch.HHsearch._get	csb.apps.hhsearch.HHsearch-class.html#_get
csb.apps.hhsearch.HHsearch.Options	csb.apps.hhsearch.HHsearch.Options-class.html
csb.apps.hhsearch.HHsearch.max_hits	csb.apps.hhsearch.HHsearch-class.html#max_hits
csb.apps.hhsearch.HHsearch._options	csb.apps.hhsearch.HHsearch-class.html#_options
csb.apps.hhsearch.HHsearch.ss	csb.apps.hhsearch.HHsearch-class.html#ss
csb.apps.hhsearch.HHsearch.cpu	csb.apps.hhsearch.HHsearch-class.html#cpu
csb.apps.hhsearch.HHsearch.Options	csb.apps.hhsearch.HHsearch.Options-class.html
csb.apps.hhsearch.HHsearch.Options.MACT	csb.apps.hhsearch.HHsearch.Options-class.html#MACT
csb.apps.hhsearch.HHsearch.Options.SS	csb.apps.hhsearch.HHsearch.Options-class.html#SS
csb.apps.hhsearch.HHsearch.Options.MIN_P	csb.apps.hhsearch.HHsearch.Options-class.html#MIN_P
csb.apps.hhsearch.HHsearch.Options.MAX_ALI	csb.apps.hhsearch.HHsearch.Options-class.html#MAX_ALI
csb.apps.hhsearch.HHsearch.Options.MAX_E	csb.apps.hhsearch.HHsearch.Options-class.html#MAX_E
csb.apps.hhsearch.HHsearch.Options.CPU	csb.apps.hhsearch.HHsearch.Options-class.html#CPU
csb.apps.hhsearch.HHsearch.Options.MAX_HITS	csb.apps.hhsearch.HHsearch.Options-class.html#MAX_HITS
csb.apps.hhsearch.HHsearchApp	csb.apps.hhsearch.HHsearchApp-class.html
csb.apps.Application.__metaclass__	abc.ABCMeta-class.html
csb.apps.Application._abc_negative_cache	csb.apps.Application-class.html#_abc_negative_cache
csb.apps.Application.__init__	csb.apps.Application-class.html#__init__
csb.apps.Application._abc_cache	csb.apps.Application-class.html#_abc_cache
csb.apps.Application.log	csb.apps.Application-class.html#log
csb.apps.hhsearch.HHsearchApp.__abstractmethods__	csb.apps.hhsearch.HHsearchApp-class.html#__abstractmethods__
csb.apps.Application.exit	csb.apps.Application-class.html#exit
csb.apps.hhsearch.HHsearchApp.main	csb.apps.hhsearch.HHsearchApp-class.html#main
csb.apps.Application.args	csb.apps.Application-class.html#args
csb.apps.Application._abc_negative_cache_version	csb.apps.Application-class.html#_abc_negative_cache_version
csb.apps.Application._abc_registry	csb.apps.Application-class.html#_abc_registry
csb.apps.hhsearch.SecStructureScoring	csb.apps.hhsearch.SecStructureScoring-class.html
csb.apps.hhsearch.SecStructureScoring.OFF	csb.apps.hhsearch.SecStructureScoring-class.html#OFF
csb.apps.hhsearch.SecStructureScoring.AFTER	csb.apps.hhsearch.SecStructureScoring-class.html#AFTER
csb.apps.hhsearch.SecStructureScoring.AFTER_PREDICTED	csb.apps.hhsearch.SecStructureScoring-class.html#AFTER_PREDICTED
csb.apps.hhsearch.SecStructureScoring.DURING	csb.apps.hhsearch.SecStructureScoring-class.html#DURING
csb.apps.hhsearch.SecStructureScoring.DURING_PREDICTED	csb.apps.hhsearch.SecStructureScoring-class.html#DURING_PREDICTED
csb.apps.precision.AppRunner	csb.apps.precision.AppRunner-class.html
csb.apps.AppRunner.__metaclass__	abc.ABCMeta-class.html
csb.apps.AppRunner._abc_negative_cache	csb.apps.AppRunner-class.html#_abc_negative_cache
csb.apps.AppRunner.module	csb.apps.AppRunner-class.html#module
csb.apps.AppRunner.__init__	csb.apps.AppRunner-class.html#__init__
csb.apps.AppRunner._abc_cache	csb.apps.AppRunner-class.html#_abc_cache
csb.apps.precision.AppRunner.__abstractmethods__	csb.apps.precision.AppRunner-class.html#__abstractmethods__
csb.apps.precision.AppRunner.command_line	csb.apps.precision.AppRunner-class.html#command_line
csb.apps.AppRunner.program	csb.apps.AppRunner-class.html#program
csb.apps.AppRunner.exit	csb.apps.AppRunner-class.html#exit
csb.apps.AppRunner.run	csb.apps.AppRunner-class.html#run
csb.apps.AppRunner.args	csb.apps.AppRunner-class.html#args
csb.apps.AppRunner.initapp	csb.apps.AppRunner-class.html#initapp
csb.apps.precision.AppRunner.target	csb.apps.precision.AppRunner-class.html#target
csb.apps.AppRunner._abc_negative_cache_version	csb.apps.AppRunner-class.html#_abc_negative_cache_version
csb.apps.AppRunner._abc_registry	csb.apps.AppRunner-class.html#_abc_registry
csb.apps.precision.ArgumentError	csb.apps.precision.ArgumentError-class.html
csb.apps.precision.ArgumentIOError	csb.apps.precision.ArgumentIOError-class.html
csb.apps.precision.ExitCodes	csb.apps.precision.ExitCodes-class.html
csb.apps.ExitCodes.CRASH	csb.apps.ExitCodes-class.html#CRASH
csb.apps.precision.ExitCodes.IO_ERROR	csb.apps.precision.ExitCodes-class.html#IO_ERROR
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csb.bio.fragments.RosettaFragsetFactory.make_chopped	csb.bio.fragments.RosettaFragsetFactory-class.html#make_chopped
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csb.bio.fragments.Target.filter	csb.bio.fragments.Target-class.html#filter
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csb.bio.fragments.Target.assign	csb.bio.fragments.Target-class.html#assign
csb.bio.fragments.TargetResidue	csb.bio.fragments.TargetResidue-class.html
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csb.bio.fragments.TargetResidue.assignments	csb.bio.fragments.TargetResidue-class.html#assignments
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csb.bio.fragments.TargetResidue.precision	csb.bio.fragments.TargetResidue-class.html#precision
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csb.bio.fragments.TorsionAnglePredictor	csb.bio.fragments.TorsionAnglePredictor-class.html
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csb.bio.fragments.TorsionAnglePredictor.__init__	csb.bio.fragments.TorsionAnglePredictor-class.html#__init__
csb.bio.fragments.TorsionAnglePredictor.get_angles	csb.bio.fragments.TorsionAnglePredictor-class.html#get_angles
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csb.bio.fragments.TorsionAnglePredictor.init	csb.bio.fragments.TorsionAnglePredictor-class.html#init
csb.bio.fragments.TorsionAnglePredictor.compute	csb.bio.fragments.TorsionAnglePredictor-class.html#compute
csb.bio.fragments.TorsionAnglePredictor.target	csb.bio.fragments.TorsionAnglePredictor-class.html#target
csb.bio.fragments.TorsionPredictionInfo	csb.bio.fragments.TorsionPredictionInfo-class.html
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csb.bio.fragments.TorsionPredictionInfo.__init__	csb.bio.fragments.TorsionPredictionInfo-class.html#__init__
csb.bio.fragments.rosetta.ExtendedOutputBuilder	csb.bio.fragments.rosetta.ExtendedOutputBuilder-class.html
csb.bio.fragments.rosetta.OutputBuilder.add_fragment	csb.bio.fragments.rosetta.OutputBuilder-class.html#add_fragment
csb.bio.fragments.rosetta.OutputBuilder.add_position	csb.bio.fragments.rosetta.OutputBuilder-class.html#add_position
csb.bio.fragments.rosetta.ExtendedOutputBuilder.add_residue	csb.bio.fragments.rosetta.ExtendedOutputBuilder-class.html#add_residue
csb.bio.fragments.rosetta.OutputBuilder.output	csb.bio.fragments.rosetta.OutputBuilder-class.html#output
csb.bio.fragments.rosetta.OutputBuilder.__init__	csb.bio.fragments.rosetta.OutputBuilder-class.html#__init__
csb.bio.fragments.rosetta.OutputBuilder	csb.bio.fragments.rosetta.OutputBuilder-class.html
csb.bio.fragments.rosetta.OutputBuilder.add_position	csb.bio.fragments.rosetta.OutputBuilder-class.html#add_position
csb.bio.fragments.rosetta.OutputBuilder.add_fragment	csb.bio.fragments.rosetta.OutputBuilder-class.html#add_fragment
csb.bio.fragments.rosetta.OutputBuilder.add_residue	csb.bio.fragments.rosetta.OutputBuilder-class.html#add_residue
csb.bio.fragments.rosetta.OutputBuilder.output	csb.bio.fragments.rosetta.OutputBuilder-class.html#output
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csb.bio.fragments.rosetta.ResidueInfo	csb.bio.fragments.rosetta.ResidueInfo-class.html
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csb.bio.fragments.rosetta.ResidueInfo.__init__	csb.bio.fragments.rosetta.ResidueInfo-class.html#__init__
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csb.bio.fragments.rosetta.RosettaFragment.__init__	csb.bio.fragments.rosetta.RosettaFragment-class.html#__init__
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csb.bio.fragments.rosetta.RosettaFragmentMap	csb.bio.fragments.rosetta.RosettaFragmentMap-class.html
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csb.bio.fragments.rosetta.RosettaFragmentMap.__init__	csb.bio.fragments.rosetta.RosettaFragmentMap-class.html#__init__
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csb.bio.fragments.rosetta.RosettaFragmentMap.read	csb.bio.fragments.rosetta.RosettaFragmentMap-class.html#read
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csb.bio.io.clans.ClansParser	csb.bio.io.clans.ClansParser-class.html
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csb.bio.io.clans.ClansParser.parse_file	csb.bio.io.clans.ClansParser-class.html#parse_file
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csb.bio.io.clans.ClansParser._parse_seq	csb.bio.io.clans.ClansParser-class.html#_parse_seq
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csb.bio.io.clans.ClansSeqgroup	csb.bio.io.clans.ClansSeqgroup-class.html
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csb.bio.io.clans.ClansSeqgroup.size	csb.bio.io.clans.ClansSeqgroup-class.html#size
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csb.bio.io.fasta.PIROutputBuilder.__abstractmethods__	csb.bio.io.fasta.PIROutputBuilder-class.html#__abstractmethods__
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csb.bio.io.fasta.BaseSequenceParser.__init__	csb.bio.io.fasta.BaseSequenceParser-class.html#__init__
csb.bio.io.fasta.BaseSequenceParser._abc_cache	csb.bio.io.fasta.BaseSequenceParser-class.html#_abc_cache
csb.bio.io.fasta.SequenceParser.__abstractmethods__	csb.bio.io.fasta.SequenceParser-class.html#__abstractmethods__
csb.bio.io.fasta.BaseSequenceParser.product_factory	csb.bio.io.fasta.BaseSequenceParser-class.html#product_factory
csb.bio.io.fasta.BaseSequenceParser.parse_file	csb.bio.io.fasta.BaseSequenceParser-class.html#parse_file
csb.bio.io.fasta.BaseSequenceParser.read	csb.bio.io.fasta.BaseSequenceParser-class.html#read
csb.bio.io.fasta.BaseSequenceParser.product_type	csb.bio.io.fasta.BaseSequenceParser-class.html#product_type
csb.bio.io.fasta.SequenceParser.read_sequence	csb.bio.io.fasta.SequenceParser-class.html#read_sequence
csb.bio.io.fasta.BaseSequenceParser.parse_string	csb.bio.io.fasta.BaseSequenceParser-class.html#parse_string
csb.bio.io.fasta.BaseSequenceParser._abc_negative_cache_version	csb.bio.io.fasta.BaseSequenceParser-class.html#_abc_negative_cache_version
csb.bio.io.fasta.BaseSequenceParser._abc_registry	csb.bio.io.fasta.BaseSequenceParser-class.html#_abc_registry
csb.bio.io.fasta.StructureAlignmentFactory	csb.bio.io.fasta.StructureAlignmentFactory-class.html
csb.bio.io.fasta.StructureAlignmentFactory.product_type	csb.bio.io.fasta.StructureAlignmentFactory-class.html#product_type
csb.bio.io.fasta.StructureAlignmentFactory.strict	csb.bio.io.fasta.StructureAlignmentFactory-class.html#strict
csb.bio.io.fasta.StructureAlignmentFactory.id_factory	csb.bio.io.fasta.StructureAlignmentFactory-class.html#id_factory
csb.bio.io.fasta.StructureAlignmentFactory.make_alignment	csb.bio.io.fasta.StructureAlignmentFactory-class.html#make_alignment
csb.bio.io.fasta.StructureAlignmentFactory.provider	csb.bio.io.fasta.StructureAlignmentFactory-class.html#provider
csb.bio.io.fasta.StructureAlignmentFactory.make_entry	csb.bio.io.fasta.StructureAlignmentFactory-class.html#make_entry
csb.bio.io.fasta.StructureAlignmentFactory.__init__	csb.bio.io.fasta.StructureAlignmentFactory-class.html#__init__
csb.bio.io.hhpred.HHMFileBuilder	csb.bio.io.hhpred.HHMFileBuilder-class.html
csb.bio.io.hhpred.HHMFileBuilder.write	csb.bio.io.hhpred.HHMFileBuilder-class.html#write
csb.bio.io.hhpred.HHMFileBuilder.add_hmm	csb.bio.io.hhpred.HHMFileBuilder-class.html#add_hmm
csb.bio.io.hhpred.HHMFileBuilder.writeline	csb.bio.io.hhpred.HHMFileBuilder-class.html#writeline
csb.bio.io.hhpred.HHMFileBuilder.output	csb.bio.io.hhpred.HHMFileBuilder-class.html#output
csb.bio.io.hhpred.HHMFileBuilder.__init__	csb.bio.io.hhpred.HHMFileBuilder-class.html#__init__
csb.bio.io.hhpred.HHOutputFormatError	csb.bio.io.hhpred.HHOutputFormatError-class.html
csb.bio.io.hhpred.HHOutputParser	csb.bio.io.hhpred.HHOutputParser-class.html
csb.bio.io.hhpred.HHOutputParser.parse_string	csb.bio.io.hhpred.HHOutputParser-class.html#parse_string
csb.bio.io.hhpred.HHOutputParser.__repr__	csb.bio.io.hhpred.HHOutputParser-class.html#__repr__
csb.bio.io.hhpred.HHOutputParser.parse_file	csb.bio.io.hhpred.HHOutputParser-class.html#parse_file
csb.bio.io.hhpred.HHOutputParser._parse	csb.bio.io.hhpred.HHOutputParser-class.html#_parse
csb.bio.io.hhpred.HHOutputParser.alignments	csb.bio.io.hhpred.HHOutputParser-class.html#alignments
csb.bio.io.hhpred.HHOutputParser.__init__	csb.bio.io.hhpred.HHOutputParser-class.html#__init__
csb.bio.io.hhpred.HHProfileFormatError	csb.bio.io.hhpred.HHProfileFormatError-class.html
csb.bio.io.hhpred.HHProfileParser	csb.bio.io.hhpred.HHProfileParser-class.html
csb.bio.io.hhpred.HHProfileParser._parse_structure	csb.bio.io.hhpred.HHProfileParser-class.html#_parse_structure
csb.bio.io.hhpred.HHProfileParser._parse_profile	csb.bio.io.hhpred.HHProfileParser-class.html#_parse_profile
csb.bio.io.hhpred.HHProfileParser._parse_properties	csb.bio.io.hhpred.HHProfileParser-class.html#_parse_properties
csb.bio.io.hhpred.HHProfileParser.parse	csb.bio.io.hhpred.HHProfileParser-class.html#parse
csb.bio.io.hhpred.HHProfileParser.__init__	csb.bio.io.hhpred.HHProfileParser-class.html#__init__
csb.bio.io.hhpred.HHProfileParser._parse_sequences	csb.bio.io.hhpred.HHProfileParser-class.html#_parse_sequences
csb.bio.io.hhpred.HHProfileParser.format_structure	csb.bio.io.hhpred.HHProfileParser-class.html#format_structure
csb.bio.io.hhpred.HHProfileParser._add_transition	csb.bio.io.hhpred.HHProfileParser-class.html#_add_transition
csb.bio.io.hhpred.HHProfileParser._chop	csb.bio.io.hhpred.HHProfileParser-class.html#_chop
csb.bio.io.hhpred.StructureFormatError	csb.bio.io.hhpred.StructureFormatError-class.html
csb.bio.io.mrc.ByteOrder	csb.bio.io.mrc.ByteOrder-class.html
csb.bio.io.mrc.ByteOrder.LITTLE	csb.bio.io.mrc.ByteOrder-class.html#LITTLE
csb.bio.io.mrc.ByteOrder.BIG	csb.bio.io.mrc.ByteOrder-class.html#BIG
csb.bio.io.mrc.ByteOrder.NATIVE	csb.bio.io.mrc.ByteOrder-class.html#NATIVE
csb.bio.io.mrc.DensityInfo	csb.bio.io.mrc.DensityInfo-class.html
csb.bio.io.mrc.DensityInfo.__init__	csb.bio.io.mrc.DensityInfo-class.html#__init__
csb.bio.io.mrc.DensityMapFormatError	csb.bio.io.mrc.DensityMapFormatError-class.html
csb.bio.io.mrc.DensityMapReader	csb.bio.io.mrc.DensityMapReader-class.html
csb.bio.io.mrc.DensityMapReader.HEADER_SIZE	csb.bio.io.mrc.DensityMapReader-class.html#HEADER_SIZE
csb.bio.io.mrc.DensityMapReader._spacing	csb.bio.io.mrc.DensityMapReader-class.html#_spacing
csb.bio.io.mrc.DensityMapReader._rawheader	csb.bio.io.mrc.DensityMapReader-class.html#_rawheader
csb.bio.io.mrc.DensityMapReader.inspect_header	csb.bio.io.mrc.DensityMapReader-class.html#inspect_header
csb.bio.io.mrc.DensityMapReader.read_header	csb.bio.io.mrc.DensityMapReader-class.html#read_header
csb.bio.io.mrc.DensityMapReader.filename	csb.bio.io.mrc.DensityMapReader-class.html#filename
csb.bio.io.mrc.DensityMapReader.__init__	csb.bio.io.mrc.DensityMapReader-class.html#__init__
csb.bio.io.mrc.DensityMapReader.read	csb.bio.io.mrc.DensityMapReader-class.html#read
csb.bio.io.mrc.DensityMapReader._shape	csb.bio.io.mrc.DensityMapReader-class.html#_shape
csb.bio.io.mrc.DensityMapReader._origin	csb.bio.io.mrc.DensityMapReader-class.html#_origin
csb.bio.io.mrc.DensityMapReader._inspect	csb.bio.io.mrc.DensityMapReader-class.html#_inspect
csb.bio.io.mrc.DensityMapWriter	csb.bio.io.mrc.DensityMapWriter-class.html
csb.bio.io.mrc.DensityMapWriter.write	csb.bio.io.mrc.DensityMapWriter-class.html#write
csb.bio.io.mrc.DensityMapWriter.write_file	csb.bio.io.mrc.DensityMapWriter-class.html#write_file
csb.bio.io.mrc.DensityMapWriter.reconstruct_header	csb.bio.io.mrc.DensityMapWriter-class.html#reconstruct_header
csb.bio.io.mrc.HeaderInfo	csb.bio.io.mrc.HeaderInfo-class.html
csb.bio.io.mrc.HeaderInfo.nc	csb.bio.io.mrc.HeaderInfo-class.html#nc
csb.bio.io.mrc.HeaderInfo.amean	csb.bio.io.mrc.HeaderInfo-class.html#amean
csb.bio.io.mrc.HeaderInfo.__init__	csb.bio.io.mrc.HeaderInfo-class.html#__init__
csb.bio.io.mrc.HeaderInfo.mapc	csb.bio.io.mrc.HeaderInfo-class.html#mapc
csb.bio.io.mrc.HeaderInfo.ny	csb.bio.io.mrc.HeaderInfo-class.html#ny
csb.bio.io.mrc.HeaderInfo.nrstart	csb.bio.io.mrc.HeaderInfo-class.html#nrstart
csb.bio.io.mrc.HeaderInfo.nsymbt	csb.bio.io.mrc.HeaderInfo-class.html#nsymbt
csb.bio.io.mrc.HeaderInfo.mapr	csb.bio.io.mrc.HeaderInfo-class.html#mapr
csb.bio.io.mrc.HeaderInfo.maps	csb.bio.io.mrc.HeaderInfo-class.html#maps
csb.bio.io.mrc.HeaderInfo.nz	csb.bio.io.mrc.HeaderInfo-class.html#nz
csb.bio.io.mrc.HeaderInfo.nr	csb.bio.io.mrc.HeaderInfo-class.html#nr
csb.bio.io.mrc.HeaderInfo.ns	csb.bio.io.mrc.HeaderInfo-class.html#ns
csb.bio.io.mrc.HeaderInfo.__getitem__	csb.bio.io.mrc.HeaderInfo-class.html#__getitem__
csb.bio.io.mrc.HeaderInfo.__iter__	csb.bio.io.mrc.HeaderInfo-class.html#__iter__
csb.bio.io.mrc.HeaderInfo.amin	csb.bio.io.mrc.HeaderInfo-class.html#amin
csb.bio.io.mrc.HeaderInfo.nsstart	csb.bio.io.mrc.HeaderInfo-class.html#nsstart
csb.bio.io.mrc.HeaderInfo.lskflg	csb.bio.io.mrc.HeaderInfo-class.html#lskflg
csb.bio.io.mrc.HeaderInfo.alpha	csb.bio.io.mrc.HeaderInfo-class.html#alpha
csb.bio.io.mrc.HeaderInfo.ispg	csb.bio.io.mrc.HeaderInfo-class.html#ispg
csb.bio.io.mrc.HeaderInfo.amax	csb.bio.io.mrc.HeaderInfo-class.html#amax
csb.bio.io.mrc.HeaderInfo.nx	csb.bio.io.mrc.HeaderInfo-class.html#nx
csb.bio.io.mrc.HeaderInfo.ncstart	csb.bio.io.mrc.HeaderInfo-class.html#ncstart
csb.bio.io.mrc.HeaderInfo.beta	csb.bio.io.mrc.HeaderInfo-class.html#beta
csb.bio.io.mrc.HeaderInfo.mode	csb.bio.io.mrc.HeaderInfo-class.html#mode
csb.bio.io.mrc.HeaderInfo.y	csb.bio.io.mrc.HeaderInfo-class.html#y
csb.bio.io.mrc.HeaderInfo.x	csb.bio.io.mrc.HeaderInfo-class.html#x
csb.bio.io.mrc.HeaderInfo.z	csb.bio.io.mrc.HeaderInfo-class.html#z
csb.bio.io.mrc.HeaderInfo.gamma	csb.bio.io.mrc.HeaderInfo-class.html#gamma
csb.bio.io.noe.BasePeakListReader	csb.bio.io.noe.BasePeakListReader-class.html
csb.bio.io.noe.BasePeakListReader.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.noe.BasePeakListReader._abc_negative_cache	csb.bio.io.noe.BasePeakListReader-class.html#_abc_negative_cache
csb.bio.io.noe.BasePeakListReader.read_file	csb.bio.io.noe.BasePeakListReader-class.html#read_file
csb.bio.io.noe.BasePeakListReader._abc_cache	csb.bio.io.noe.BasePeakListReader-class.html#_abc_cache
csb.bio.io.noe.BasePeakListReader.__abstractmethods__	csb.bio.io.noe.BasePeakListReader-class.html#__abstractmethods__
csb.bio.io.noe.BasePeakListReader.read	csb.bio.io.noe.BasePeakListReader-class.html#read
csb.bio.io.noe.BasePeakListReader.read_all	csb.bio.io.noe.BasePeakListReader-class.html#read_all
csb.bio.io.noe.BasePeakListReader._abc_negative_cache_version	csb.bio.io.noe.BasePeakListReader-class.html#_abc_negative_cache_version
csb.bio.io.noe.BasePeakListReader._abc_registry	csb.bio.io.noe.BasePeakListReader-class.html#_abc_registry
csb.bio.io.noe.PeakListFormatError	csb.bio.io.noe.PeakListFormatError-class.html
csb.bio.io.noe.SparkyPeakListReader	csb.bio.io.noe.SparkyPeakListReader-class.html
csb.bio.io.noe.BasePeakListReader.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.noe.BasePeakListReader._abc_negative_cache	csb.bio.io.noe.BasePeakListReader-class.html#_abc_negative_cache
csb.bio.io.noe.BasePeakListReader.read_file	csb.bio.io.noe.BasePeakListReader-class.html#read_file
csb.bio.io.noe.SparkyPeakListReader.__init__	csb.bio.io.noe.SparkyPeakListReader-class.html#__init__
csb.bio.io.noe.BasePeakListReader._abc_cache	csb.bio.io.noe.BasePeakListReader-class.html#_abc_cache
csb.bio.io.noe.SparkyPeakListReader.__abstractmethods__	csb.bio.io.noe.SparkyPeakListReader-class.html#__abstractmethods__
csb.bio.io.noe.SparkyPeakListReader.read	csb.bio.io.noe.SparkyPeakListReader-class.html#read
csb.bio.io.noe.BasePeakListReader.read_all	csb.bio.io.noe.BasePeakListReader-class.html#read_all
csb.bio.io.noe.BasePeakListReader._abc_negative_cache_version	csb.bio.io.noe.BasePeakListReader-class.html#_abc_negative_cache_version
csb.bio.io.noe.BasePeakListReader._abc_registry	csb.bio.io.noe.BasePeakListReader-class.html#_abc_registry
csb.bio.io.noe.XeasyFileBuilder	csb.bio.io.noe.XeasyFileBuilder-class.html
csb.bio.io.noe.XeasyFileBuilder.add_peaks	csb.bio.io.noe.XeasyFileBuilder-class.html#add_peaks
csb.bio.io.noe.XeasyFileBuilder.add_header	csb.bio.io.noe.XeasyFileBuilder-class.html#add_header
csb.bio.io.noe.XeasyFileBuilder.add_spectrum	csb.bio.io.noe.XeasyFileBuilder-class.html#add_spectrum
csb.bio.io.noe.XeasyFileBuilder.__init__	csb.bio.io.noe.XeasyFileBuilder-class.html#__init__
csb.bio.io.noe.XeasyPeakListReader	csb.bio.io.noe.XeasyPeakListReader-class.html
csb.bio.io.noe.BasePeakListReader.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.noe.BasePeakListReader._abc_negative_cache	csb.bio.io.noe.BasePeakListReader-class.html#_abc_negative_cache
csb.bio.io.noe.BasePeakListReader.read_file	csb.bio.io.noe.BasePeakListReader-class.html#read_file
csb.bio.io.noe.XeasyPeakListReader.__init__	csb.bio.io.noe.XeasyPeakListReader-class.html#__init__
csb.bio.io.noe.BasePeakListReader._abc_cache	csb.bio.io.noe.BasePeakListReader-class.html#_abc_cache
csb.bio.io.noe.XeasyPeakListReader.__abstractmethods__	csb.bio.io.noe.XeasyPeakListReader-class.html#__abstractmethods__
csb.bio.io.noe.XeasyPeakListReader.read	csb.bio.io.noe.XeasyPeakListReader-class.html#read
csb.bio.io.noe.XeasyPeakListReader._read_header	csb.bio.io.noe.XeasyPeakListReader-class.html#_read_header
csb.bio.io.noe.BasePeakListReader.read_all	csb.bio.io.noe.BasePeakListReader-class.html#read_all
csb.bio.io.noe.BasePeakListReader._abc_negative_cache_version	csb.bio.io.noe.BasePeakListReader-class.html#_abc_negative_cache_version
csb.bio.io.noe.BasePeakListReader._abc_registry	csb.bio.io.noe.BasePeakListReader-class.html#_abc_registry
csb.bio.io.procheck.ProcheckParser	csb.bio.io.procheck.ProcheckParser-class.html
csb.bio.io.procheck.ProcheckParser.parse	csb.bio.io.procheck.ProcheckParser-class.html#parse
csb.bio.io.procheck.ProcheckParser.run	csb.bio.io.procheck.ProcheckParser-class.html#run
csb.bio.io.procheck.ProcheckParser.__init__	csb.bio.io.procheck.ProcheckParser-class.html#__init__
csb.bio.io.psipred.PSIPredParseError	csb.bio.io.psipred.PSIPredParseError-class.html
csb.bio.io.psipred.PSIPredParser	csb.bio.io.psipred.PSIPredParser-class.html
csb.bio.io.psipred.PSIPredParser.parse	csb.bio.io.psipred.PSIPredParser-class.html#parse
csb.bio.io.psipred.PSIPredParser.parse_scores	csb.bio.io.psipred.PSIPredParser-class.html#parse_scores
csb.bio.io.psipred.PSIPredResidueInfo	csb.bio.io.psipred.PSIPredResidueInfo-class.html
csb.bio.io.psipred.PSIPredResidueInfo.__init__	csb.bio.io.psipred.PSIPredResidueInfo-class.html#__init__
csb.bio.io.svg.SSCartoonBuilder	csb.bio.io.svg.SSCartoonBuilder-class.html
csb.bio.io.svg.SSCartoonBuilder._format	csb.bio.io.svg.SSCartoonBuilder-class.html#_format
csb.bio.io.svg.SSCartoonBuilder._coil	csb.bio.io.svg.SSCartoonBuilder-class.html#_coil
csb.bio.io.svg.SSCartoonBuilder._strand	csb.bio.io.svg.SSCartoonBuilder-class.html#_strand
csb.bio.io.svg.SSCartoonBuilder._helix	csb.bio.io.svg.SSCartoonBuilder-class.html#_helix
csb.bio.io.svg.SSCartoonBuilder.build	csb.bio.io.svg.SSCartoonBuilder-class.html#build
csb.bio.io.svg.SSCartoonBuilder._gap	csb.bio.io.svg.SSCartoonBuilder-class.html#_gap
csb.bio.io.svg.SSCartoonBuilder.__init__	csb.bio.io.svg.SSCartoonBuilder-class.html#__init__
csb.bio.io.vasco.ChemicalShiftContainer	csb.bio.io.vasco.ChemicalShiftContainer-class.html
csb.core.BaseDictionaryContainer._exception	csb.core.BaseDictionaryContainer-class.html#_exception
csb.core.DictionaryContainer._update	csb.core.DictionaryContainer-class.html#_update
csb.bio.io.vasco.ChemicalShiftContainer.__init__	csb.bio.io.vasco.ChemicalShiftContainer-class.html#__init__
csb.core.BaseDictionaryContainer.__contains__	csb.core.BaseDictionaryContainer-class.html#__contains__
csb.core.BaseDictionaryContainer._getinternal	csb.core.BaseDictionaryContainer-class.html#_getinternal
csb.core.DictionaryContainer._remove	csb.core.DictionaryContainer-class.html#_remove
csb.core.DictionaryContainer.append	csb.core.DictionaryContainer-class.html#append
csb.core.BaseDictionaryContainer._set_items	csb.core.BaseDictionaryContainer-class.html#_set_items
csb.core.BaseDictionaryContainer._update_items	csb.core.BaseDictionaryContainer-class.html#_update_items
csb.core.BaseDictionaryContainer.__len__	csb.core.BaseDictionaryContainer-class.html#__len__
csb.core.BaseDictionaryContainer.__getitem__	csb.core.BaseDictionaryContainer-class.html#__getitem__
csb.core.BaseDictionaryContainer.keys	csb.core.BaseDictionaryContainer-class.html#keys
csb.core.BaseDictionaryContainer.__iter__	csb.core.BaseDictionaryContainer-class.html#__iter__
csb.core.BaseDictionaryContainer.__bool__	csb.core.BaseDictionaryContainer-class.html#__bool__
csb.core.BaseDictionaryContainer._append_item	csb.core.BaseDictionaryContainer-class.html#_append_item
csb.core.BaseDictionaryContainer.__nonzero__	csb.core.BaseDictionaryContainer-class.html#__nonzero__
csb.core.BaseDictionaryContainer.length	csb.core.BaseDictionaryContainer-class.html#length
csb.core.BaseDictionaryContainer._remove_item	csb.core.BaseDictionaryContainer-class.html#_remove_item
csb.core.BaseDictionaryContainer.__repr__	csb.core.BaseDictionaryContainer-class.html#__repr__
csb.core.DictionaryContainer._set	csb.core.DictionaryContainer-class.html#_set
csb.bio.io.vasco.ShiftInfo	csb.bio.io.vasco.ShiftInfo-class.html
csb.bio.io.vasco.ShiftInfo.__str__	csb.bio.io.vasco.ShiftInfo-class.html#__str__
csb.bio.io.vasco.ShiftInfo.__repr__	csb.bio.io.vasco.ShiftInfo-class.html#__repr__
csb.bio.io.vasco.ShiftInfo.__init__	csb.bio.io.vasco.ShiftInfo-class.html#__init__
csb.bio.io.vasco.VascoStructureParser	csb.bio.io.vasco.VascoStructureParser-class.html
csb.bio.io.vasco.VascoStructureParser._parse_shifts	csb.bio.io.vasco.VascoStructureParser-class.html#_parse_shifts
csb.bio.io.vasco.VascoStructureParser.parse	csb.bio.io.vasco.VascoStructureParser-class.html#parse
csb.bio.io.vasco.VascoStructureParser._parse_header	csb.bio.io.vasco.VascoStructureParser-class.html#_parse_header
csb.bio.io.vasco.VascoStructureParser.__init__	csb.bio.io.vasco.VascoStructureParser-class.html#__init__
csb.bio.io.whatif.WhatCheckParser	csb.bio.io.whatif.WhatCheckParser-class.html
csb.bio.io.whatif.WhatCheckParser.run	csb.bio.io.whatif.WhatCheckParser-class.html#run
csb.bio.io.whatif.WhatCheckParser.parse_summary	csb.bio.io.whatif.WhatCheckParser-class.html#parse_summary
csb.bio.io.whatif.WhatCheckParser.parse	csb.bio.io.whatif.WhatCheckParser-class.html#parse
csb.bio.io.whatif.WhatCheckParser.__init__	csb.bio.io.whatif.WhatCheckParser-class.html#__init__
csb.bio.io.wwpdb.AbstractResidueMapper	csb.bio.io.wwpdb.AbstractResidueMapper-class.html
csb.bio.io.wwpdb.AbstractResidueMapper.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.AbstractResidueMapper._abc_negative_cache	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_negative_cache
csb.bio.io.wwpdb.AbstractResidueMapper._abc_cache	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_cache
csb.bio.io.wwpdb.AbstractResidueMapper.__abstractmethods__	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#__abstractmethods__
csb.bio.io.wwpdb.AbstractResidueMapper.map	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#map
csb.bio.io.wwpdb.AbstractResidueMapper._build	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_build
csb.bio.io.wwpdb.AbstractResidueMapper.create_gap	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#create_gap
csb.bio.io.wwpdb.AbstractResidueMapper._abc_negative_cache_version	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.AbstractResidueMapper._abc_registry	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_registry
csb.bio.io.wwpdb.AbstractStructureParser	csb.bio.io.wwpdb.AbstractStructureParser-class.html
csb.bio.io.wwpdb.AbstractStructureParser._parse_atoms	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_atoms
csb.bio.io.wwpdb.AbstractStructureParser.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.AbstractStructureParser._abc_negative_cache	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_negative_cache
csb.bio.io.wwpdb.AbstractStructureParser.guess_chain_type	csb.bio.io.wwpdb.AbstractStructureParser-class.html#guess_chain_type
csb.bio.io.wwpdb.AbstractStructureParser._map_residues	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_map_residues
csb.bio.io.wwpdb.AbstractStructureParser.parse	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse
csb.bio.io.wwpdb.AbstractStructureParser._read_atom	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_atom
csb.bio.io.wwpdb.AbstractStructureParser._read_residue	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_residue
csb.bio.io.wwpdb.AbstractStructureParser._read_model	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_model
csb.bio.io.wwpdb.AbstractStructureParser._parse_atom_line	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_atom_line
csb.bio.io.wwpdb.AbstractStructureParser.__init__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__init__
csb.bio.io.wwpdb.AbstractStructureParser._abc_cache	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_cache
csb.bio.io.wwpdb.AbstractStructureParser._read_residue_raw	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_residue_raw
csb.bio.io.wwpdb.AbstractStructureParser._parse_model_line	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_model_line
csb.bio.io.wwpdb.AbstractStructureParser.__abstractmethods__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__abstractmethods__
csb.bio.io.wwpdb.AbstractStructureParser.filename	csb.bio.io.wwpdb.AbstractStructureParser-class.html#filename
csb.bio.io.wwpdb.AbstractStructureParser.models	csb.bio.io.wwpdb.AbstractStructureParser-class.html#models
csb.bio.io.wwpdb.AbstractStructureParser._read_chain_id	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_chain_id
csb.bio.io.wwpdb.AbstractStructureParser._scroll_model	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_scroll_model
csb.bio.io.wwpdb.AbstractStructureParser._read_bfactor	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_bfactor
csb.bio.io.wwpdb.AbstractStructureParser.guess_sequence_type	csb.bio.io.wwpdb.AbstractStructureParser-class.html#guess_sequence_type
csb.bio.io.wwpdb.AbstractStructureParser.create_parser	csb.bio.io.wwpdb.AbstractStructureParser-class.html#create_parser
csb.bio.io.wwpdb.AbstractStructureParser.__del__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__del__
csb.bio.io.wwpdb.AbstractStructureParser.parse_residue	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_residue
csb.bio.io.wwpdb.AbstractStructureParser.parse_residue_safe	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_residue_safe
csb.bio.io.wwpdb.AbstractStructureParser._read_insertion_code	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_insertion_code
csb.bio.io.wwpdb.AbstractStructureParser._parse_remarks	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_remarks
csb.bio.io.wwpdb.AbstractStructureParser._read_sequence_number	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_sequence_number
csb.bio.io.wwpdb.AbstractStructureParser._read_charge	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_charge
csb.bio.io.wwpdb.AbstractStructureParser.mapper	csb.bio.io.wwpdb.AbstractStructureParser-class.html#mapper
csb.bio.io.wwpdb.AbstractStructureParser.parse_models	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_models
csb.bio.io.wwpdb.AbstractStructureParser._read_occupancy	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_occupancy
csb.bio.io.wwpdb.AbstractStructureParser._read_element	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_element
csb.bio.io.wwpdb.AbstractStructureParser._parse_ss	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_ss
csb.bio.io.wwpdb.AbstractStructureParser._read_alternate	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_alternate
csb.bio.io.wwpdb.AbstractStructureParser._parse_header	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_header
csb.bio.io.wwpdb.AbstractStructureParser._abc_negative_cache_version	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.AbstractStructureParser.parse_structure	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_structure
csb.bio.io.wwpdb.AbstractStructureParser.parse_biomolecule	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_biomolecule
csb.bio.io.wwpdb.AbstractStructureParser._abc_registry	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_registry
csb.bio.io.wwpdb.AsyncParseResult	csb.bio.io.wwpdb.AsyncParseResult-class.html
csb.bio.io.wwpdb.AsyncParseResult.__repr__	csb.bio.io.wwpdb.AsyncParseResult-class.html#__repr__
csb.bio.io.wwpdb.AsyncParseResult.__init__	csb.bio.io.wwpdb.AsyncParseResult-class.html#__init__
csb.bio.io.wwpdb.AsyncStructureParser	csb.bio.io.wwpdb.AsyncStructureParser-class.html
csb.bio.io.wwpdb.AsyncStructureParser.parse_async	csb.bio.io.wwpdb.AsyncStructureParser-class.html#parse_async
csb.bio.io.wwpdb.AsyncStructureParser.parse_structure	csb.bio.io.wwpdb.AsyncStructureParser-class.html#parse_structure
csb.bio.io.wwpdb.AsyncStructureParser._recycle	csb.bio.io.wwpdb.AsyncStructureParser-class.html#_recycle
csb.bio.io.wwpdb.AsyncStructureParser.__init__	csb.bio.io.wwpdb.AsyncStructureParser-class.html#__init__
csb.bio.io.wwpdb.CombinedResidueMapper	csb.bio.io.wwpdb.CombinedResidueMapper-class.html
csb.bio.io.wwpdb.AbstractResidueMapper.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.AbstractResidueMapper._abc_negative_cache	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_negative_cache
csb.bio.io.wwpdb.AbstractResidueMapper._abc_cache	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_cache
csb.bio.io.wwpdb.CombinedResidueMapper.__abstractmethods__	csb.bio.io.wwpdb.CombinedResidueMapper-class.html#__abstractmethods__
csb.bio.io.wwpdb.CombinedResidueMapper.FAST	csb.bio.io.wwpdb.CombinedResidueMapper-class.html#FAST
csb.bio.io.wwpdb.CombinedResidueMapper.map	csb.bio.io.wwpdb.CombinedResidueMapper-class.html#map
csb.bio.io.wwpdb.CombinedResidueMapper.ROBUST	csb.bio.io.wwpdb.CombinedResidueMapper-class.html#ROBUST
csb.bio.io.wwpdb.AbstractResidueMapper._build	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_build
csb.bio.io.wwpdb.AbstractResidueMapper.create_gap	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#create_gap
csb.bio.io.wwpdb.AbstractResidueMapper._abc_negative_cache_version	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.AbstractResidueMapper._abc_registry	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_registry
csb.bio.io.wwpdb.CustomStructureProvider	csb.bio.io.wwpdb.CustomStructureProvider-class.html
csb.bio.io.wwpdb.StructureProvider.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.StructureProvider._abc_negative_cache	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_negative_cache
csb.bio.io.wwpdb.CustomStructureProvider.find	csb.bio.io.wwpdb.CustomStructureProvider-class.html#find
csb.bio.io.wwpdb.CustomStructureProvider.__init__	csb.bio.io.wwpdb.CustomStructureProvider-class.html#__init__
csb.bio.io.wwpdb.StructureProvider._abc_cache	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_cache
csb.bio.io.wwpdb.CustomStructureProvider.paths	csb.bio.io.wwpdb.CustomStructureProvider-class.html#paths
csb.bio.io.wwpdb.CustomStructureProvider.__abstractmethods__	csb.bio.io.wwpdb.CustomStructureProvider-class.html#__abstractmethods__
csb.bio.io.wwpdb.CustomStructureProvider.add	csb.bio.io.wwpdb.CustomStructureProvider-class.html#add
csb.bio.io.wwpdb.StructureProvider.__getitem__	csb.bio.io.wwpdb.StructureProvider-class.html#__getitem__
csb.bio.io.wwpdb.StructureProvider.get	csb.bio.io.wwpdb.StructureProvider-class.html#get
csb.bio.io.wwpdb.CustomStructureProvider.identifiers	csb.bio.io.wwpdb.CustomStructureProvider-class.html#identifiers
csb.bio.io.wwpdb.CustomStructureProvider.remove	csb.bio.io.wwpdb.CustomStructureProvider-class.html#remove
csb.bio.io.wwpdb.StructureProvider._abc_negative_cache_version	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.StructureProvider._abc_registry	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_registry
csb.bio.io.wwpdb.DegenerateID	csb.bio.io.wwpdb.DegenerateID-class.html
csb.bio.io.wwpdb.EntryID.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.EntryID.chain	csb.bio.io.wwpdb.EntryID-class.html#chain
csb.bio.io.wwpdb.EntryID._abc_negative_cache	csb.bio.io.wwpdb.EntryID-class.html#_abc_negative_cache
csb.bio.io.wwpdb.EntryID.__str__	csb.bio.io.wwpdb.EntryID-class.html#__str__
csb.bio.io.wwpdb.EntryID.accession	csb.bio.io.wwpdb.EntryID-class.html#accession
csb.bio.io.wwpdb.DegenerateID.parse	csb.bio.io.wwpdb.DegenerateID-class.html#parse
csb.bio.io.wwpdb.EntryID.entry_id	csb.bio.io.wwpdb.EntryID-class.html#entry_id
csb.bio.io.wwpdb.EntryID.__init__	csb.bio.io.wwpdb.EntryID-class.html#__init__
csb.bio.io.wwpdb.EntryID._abc_cache	csb.bio.io.wwpdb.EntryID-class.html#_abc_cache
csb.bio.io.wwpdb.EntryID.create	csb.bio.io.wwpdb.EntryID-class.html#create
csb.bio.io.wwpdb.DegenerateID.__abstractmethods__	csb.bio.io.wwpdb.DegenerateID-class.html#__abstractmethods__
csb.bio.io.wwpdb.EntryID.format	csb.bio.io.wwpdb.EntryID-class.html#format
csb.bio.io.wwpdb.EntryID._abc_negative_cache_version	csb.bio.io.wwpdb.EntryID-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.EntryID._abc_registry	csb.bio.io.wwpdb.EntryID-class.html#_abc_registry
csb.bio.io.wwpdb.EntryID	csb.bio.io.wwpdb.EntryID-class.html
csb.bio.io.wwpdb.EntryID.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.EntryID.chain	csb.bio.io.wwpdb.EntryID-class.html#chain
csb.bio.io.wwpdb.EntryID._abc_negative_cache	csb.bio.io.wwpdb.EntryID-class.html#_abc_negative_cache
csb.bio.io.wwpdb.EntryID.__str__	csb.bio.io.wwpdb.EntryID-class.html#__str__
csb.bio.io.wwpdb.EntryID.accession	csb.bio.io.wwpdb.EntryID-class.html#accession
csb.bio.io.wwpdb.EntryID.parse	csb.bio.io.wwpdb.EntryID-class.html#parse
csb.bio.io.wwpdb.EntryID.entry_id	csb.bio.io.wwpdb.EntryID-class.html#entry_id
csb.bio.io.wwpdb.EntryID.__init__	csb.bio.io.wwpdb.EntryID-class.html#__init__
csb.bio.io.wwpdb.EntryID._abc_cache	csb.bio.io.wwpdb.EntryID-class.html#_abc_cache
csb.bio.io.wwpdb.EntryID.create	csb.bio.io.wwpdb.EntryID-class.html#create
csb.bio.io.wwpdb.EntryID.__abstractmethods__	csb.bio.io.wwpdb.EntryID-class.html#__abstractmethods__
csb.bio.io.wwpdb.EntryID.format	csb.bio.io.wwpdb.EntryID-class.html#format
csb.bio.io.wwpdb.EntryID._abc_negative_cache_version	csb.bio.io.wwpdb.EntryID-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.EntryID._abc_registry	csb.bio.io.wwpdb.EntryID-class.html#_abc_registry
csb.bio.io.wwpdb.FastResidueMapper	csb.bio.io.wwpdb.FastResidueMapper-class.html
csb.bio.io.wwpdb.AbstractResidueMapper.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.FastResidueMapper.PATTERN	csb.bio.io.wwpdb.FastResidueMapper-class.html#PATTERN
csb.bio.io.wwpdb.FastResidueMapper._encode	csb.bio.io.wwpdb.FastResidueMapper-class.html#_encode
csb.bio.io.wwpdb.FastResidueMapper.CODEC	csb.bio.io.wwpdb.FastResidueMapper-class.html#CODEC
csb.bio.io.wwpdb.FastResidueMapper.__init__	csb.bio.io.wwpdb.FastResidueMapper-class.html#__init__
csb.bio.io.wwpdb.AbstractResidueMapper._abc_cache	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_cache
csb.bio.io.wwpdb.FastResidueMapper.__abstractmethods__	csb.bio.io.wwpdb.FastResidueMapper-class.html#__abstractmethods__
csb.bio.io.wwpdb.AbstractResidueMapper._abc_negative_cache	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_negative_cache
csb.bio.io.wwpdb.FastResidueMapper.MAX_FRAGMENTS	csb.bio.io.wwpdb.FastResidueMapper-class.html#MAX_FRAGMENTS
csb.bio.io.wwpdb.FastResidueMapper._encode_sequence	csb.bio.io.wwpdb.FastResidueMapper-class.html#_encode_sequence
csb.bio.io.wwpdb.FastResidueMapper._register_label	csb.bio.io.wwpdb.FastResidueMapper-class.html#_register_label
csb.bio.io.wwpdb.FastResidueMapper.map	csb.bio.io.wwpdb.FastResidueMapper-class.html#map
csb.bio.io.wwpdb.FastResidueMapper.MIN_UNICODE_CHAR	csb.bio.io.wwpdb.FastResidueMapper-class.html#MIN_UNICODE_CHAR
csb.bio.io.wwpdb.FastResidueMapper._build_pattern	csb.bio.io.wwpdb.FastResidueMapper-class.html#_build_pattern
csb.bio.io.wwpdb.FastResidueMapper.DELIMITER	csb.bio.io.wwpdb.FastResidueMapper-class.html#DELIMITER
csb.bio.io.wwpdb.AbstractResidueMapper._build	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_build
csb.bio.io.wwpdb.FastResidueMapper.FORBIDDEN_CHARS	csb.bio.io.wwpdb.FastResidueMapper-class.html#FORBIDDEN_CHARS
csb.bio.io.wwpdb.AbstractResidueMapper.create_gap	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#create_gap
csb.bio.io.wwpdb.AbstractResidueMapper._abc_negative_cache_version	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.AbstractResidueMapper._abc_registry	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_registry
csb.bio.io.wwpdb.FileBuilder	csb.bio.io.wwpdb.FileBuilder-class.html
csb.bio.io.wwpdb.FileBuilder.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.FileBuilder._abc_negative_cache	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_negative_cache
csb.bio.io.wwpdb.FileBuilder.add_structure	csb.bio.io.wwpdb.FileBuilder-class.html#add_structure
csb.bio.io.wwpdb.FileBuilder.add_header	csb.bio.io.wwpdb.FileBuilder-class.html#add_header
csb.bio.io.wwpdb.FileBuilder.writeline	csb.bio.io.wwpdb.FileBuilder-class.html#writeline
csb.bio.io.wwpdb.FileBuilder.__init__	csb.bio.io.wwpdb.FileBuilder-class.html#__init__
csb.bio.io.wwpdb.FileBuilder._abc_cache	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_cache
csb.bio.io.wwpdb.FileBuilder.__abstractmethods__	csb.bio.io.wwpdb.FileBuilder-class.html#__abstractmethods__
csb.bio.io.wwpdb.FileBuilder.write	csb.bio.io.wwpdb.FileBuilder-class.html#write
csb.bio.io.wwpdb.FileBuilder.finalize	csb.bio.io.wwpdb.FileBuilder-class.html#finalize
csb.bio.io.wwpdb.FileBuilder.isnull	csb.bio.io.wwpdb.FileBuilder-class.html#isnull
csb.bio.io.wwpdb.FileBuilder._abc_negative_cache_version	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.FileBuilder.output	csb.bio.io.wwpdb.FileBuilder-class.html#output
csb.bio.io.wwpdb.FileBuilder._abc_registry	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_registry
csb.bio.io.wwpdb.FileSystemStructureProvider	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html
csb.bio.io.wwpdb.StructureProvider.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.StructureProvider._abc_negative_cache	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_negative_cache
csb.bio.io.wwpdb.FileSystemStructureProvider.find	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html#find
csb.bio.io.wwpdb.FileSystemStructureProvider.__init__	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html#__init__
csb.bio.io.wwpdb.StructureProvider._abc_cache	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_cache
csb.bio.io.wwpdb.FileSystemStructureProvider.paths	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html#paths
csb.bio.io.wwpdb.FileSystemStructureProvider.add_template	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html#add_template
csb.bio.io.wwpdb.FileSystemStructureProvider.__abstractmethods__	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html#__abstractmethods__
csb.bio.io.wwpdb.FileSystemStructureProvider.add	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html#add
csb.bio.io.wwpdb.FileSystemStructureProvider.templates	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html#templates
csb.bio.io.wwpdb.StructureProvider.__getitem__	csb.bio.io.wwpdb.StructureProvider-class.html#__getitem__
csb.bio.io.wwpdb.StructureProvider.get	csb.bio.io.wwpdb.StructureProvider-class.html#get
csb.bio.io.wwpdb.FileSystemStructureProvider.remove	csb.bio.io.wwpdb.FileSystemStructureProvider-class.html#remove
csb.bio.io.wwpdb.StructureProvider._abc_negative_cache_version	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.StructureProvider._abc_registry	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_registry
csb.bio.io.wwpdb.HeaderFormatError	csb.bio.io.wwpdb.HeaderFormatError-class.html
csb.bio.io.wwpdb.InvalidEntryIDError	csb.bio.io.wwpdb.InvalidEntryIDError-class.html
csb.bio.io.wwpdb.LegacyStructureParser	csb.bio.io.wwpdb.LegacyStructureParser-class.html
csb.bio.io.wwpdb.AbstractStructureParser._parse_atoms	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_atoms
csb.bio.io.wwpdb.LegacyStructureParser._add_chain	csb.bio.io.wwpdb.LegacyStructureParser-class.html#_add_chain
csb.bio.io.wwpdb.AbstractStructureParser._abc_negative_cache	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_negative_cache
csb.bio.io.wwpdb.AbstractStructureParser.guess_chain_type	csb.bio.io.wwpdb.AbstractStructureParser-class.html#guess_chain_type
csb.bio.io.wwpdb.LegacyStructureParser._map_residues	csb.bio.io.wwpdb.LegacyStructureParser-class.html#_map_residues
csb.bio.io.wwpdb.AbstractStructureParser.parse	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse
csb.bio.io.wwpdb.AbstractStructureParser._read_atom	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_atom
csb.bio.io.wwpdb.AbstractStructureParser._read_residue	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_residue
csb.bio.io.wwpdb.AbstractStructureParser.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.AbstractStructureParser._read_model	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_model
csb.bio.io.wwpdb.AbstractStructureParser.__init__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__init__
csb.bio.io.wwpdb.AbstractStructureParser.mapper	csb.bio.io.wwpdb.AbstractStructureParser-class.html#mapper
csb.bio.io.wwpdb.AbstractStructureParser._abc_cache	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_cache
csb.bio.io.wwpdb.AbstractStructureParser._read_residue_raw	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_residue_raw
csb.bio.io.wwpdb.AbstractStructureParser._parse_model_line	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_model_line
csb.bio.io.wwpdb.LegacyStructureParser.__abstractmethods__	csb.bio.io.wwpdb.LegacyStructureParser-class.html#__abstractmethods__
csb.bio.io.wwpdb.AbstractStructureParser.filename	csb.bio.io.wwpdb.AbstractStructureParser-class.html#filename
csb.bio.io.wwpdb.LegacyStructureParser._fix_chain	csb.bio.io.wwpdb.LegacyStructureParser-class.html#_fix_chain
csb.bio.io.wwpdb.AbstractStructureParser.__del__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__del__
csb.bio.io.wwpdb.AbstractStructureParser._read_chain_id	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_chain_id
csb.bio.io.wwpdb.AbstractStructureParser._scroll_model	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_scroll_model
csb.bio.io.wwpdb.AbstractStructureParser._read_bfactor	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_bfactor
csb.bio.io.wwpdb.AbstractStructureParser.parse_residue_safe	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_residue_safe
csb.bio.io.wwpdb.AbstractStructureParser.create_parser	csb.bio.io.wwpdb.AbstractStructureParser-class.html#create_parser
csb.bio.io.wwpdb.AbstractStructureParser.models	csb.bio.io.wwpdb.AbstractStructureParser-class.html#models
csb.bio.io.wwpdb.AbstractStructureParser.parse_residue	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_residue
csb.bio.io.wwpdb.AbstractStructureParser.guess_sequence_type	csb.bio.io.wwpdb.AbstractStructureParser-class.html#guess_sequence_type
csb.bio.io.wwpdb.AbstractStructureParser._read_insertion_code	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_insertion_code
csb.bio.io.wwpdb.AbstractStructureParser._parse_remarks	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_remarks
csb.bio.io.wwpdb.AbstractStructureParser._read_sequence_number	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_sequence_number
csb.bio.io.wwpdb.LegacyStructureParser._build_chain	csb.bio.io.wwpdb.LegacyStructureParser-class.html#_build_chain
csb.bio.io.wwpdb.AbstractStructureParser._read_charge	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_charge
csb.bio.io.wwpdb.AbstractStructureParser._parse_atom_line	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_atom_line
csb.bio.io.wwpdb.AbstractStructureParser.parse_models	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_models
csb.bio.io.wwpdb.AbstractStructureParser._read_occupancy	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_occupancy
csb.bio.io.wwpdb.AbstractStructureParser._read_element	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_element
csb.bio.io.wwpdb.AbstractStructureParser._parse_ss	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_ss
csb.bio.io.wwpdb.AbstractStructureParser.parse_biomolecule	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_biomolecule
csb.bio.io.wwpdb.LegacyStructureParser._parse_header	csb.bio.io.wwpdb.LegacyStructureParser-class.html#_parse_header
csb.bio.io.wwpdb.AbstractStructureParser._abc_negative_cache_version	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.AbstractStructureParser.parse_structure	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_structure
csb.bio.io.wwpdb.AbstractStructureParser._read_alternate	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_alternate
csb.bio.io.wwpdb.AbstractStructureParser._abc_registry	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_registry
csb.bio.io.wwpdb.PDBEnsembleFileBuilder	csb.bio.io.wwpdb.PDBEnsembleFileBuilder-class.html
csb.bio.io.wwpdb.FileBuilder.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.FileBuilder._abc_negative_cache	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_negative_cache
csb.bio.io.wwpdb.PDBEnsembleFileBuilder.add_structure	csb.bio.io.wwpdb.PDBEnsembleFileBuilder-class.html#add_structure
csb.bio.io.wwpdb.FileBuilder.isnull	csb.bio.io.wwpdb.FileBuilder-class.html#isnull
csb.bio.io.wwpdb.PDBFileBuilder.writeline	csb.bio.io.wwpdb.PDBFileBuilder-class.html#writeline
csb.bio.io.wwpdb.FileBuilder.__init__	csb.bio.io.wwpdb.FileBuilder-class.html#__init__
csb.bio.io.wwpdb.FileBuilder._abc_cache	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_cache
csb.bio.io.wwpdb.PDBFileBuilder.__abstractmethods__	csb.bio.io.wwpdb.PDBFileBuilder-class.html#__abstractmethods__
csb.bio.io.wwpdb.FileBuilder.write	csb.bio.io.wwpdb.FileBuilder-class.html#write
csb.bio.io.wwpdb.PDBFileBuilder.finalize	csb.bio.io.wwpdb.PDBFileBuilder-class.html#finalize
csb.bio.io.wwpdb.PDBFileBuilder.add_header	csb.bio.io.wwpdb.PDBFileBuilder-class.html#add_header
csb.bio.io.wwpdb.FileBuilder._abc_negative_cache_version	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.FileBuilder.output	csb.bio.io.wwpdb.FileBuilder-class.html#output
csb.bio.io.wwpdb.FileBuilder._abc_registry	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_registry
csb.bio.io.wwpdb.PDBFileBuilder	csb.bio.io.wwpdb.PDBFileBuilder-class.html
csb.bio.io.wwpdb.FileBuilder.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.FileBuilder._abc_negative_cache	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_negative_cache
csb.bio.io.wwpdb.PDBFileBuilder.add_structure	csb.bio.io.wwpdb.PDBFileBuilder-class.html#add_structure
csb.bio.io.wwpdb.FileBuilder.isnull	csb.bio.io.wwpdb.FileBuilder-class.html#isnull
csb.bio.io.wwpdb.PDBFileBuilder.writeline	csb.bio.io.wwpdb.PDBFileBuilder-class.html#writeline
csb.bio.io.wwpdb.FileBuilder.__init__	csb.bio.io.wwpdb.FileBuilder-class.html#__init__
csb.bio.io.wwpdb.FileBuilder._abc_cache	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_cache
csb.bio.io.wwpdb.PDBFileBuilder.__abstractmethods__	csb.bio.io.wwpdb.PDBFileBuilder-class.html#__abstractmethods__
csb.bio.io.wwpdb.FileBuilder.write	csb.bio.io.wwpdb.FileBuilder-class.html#write
csb.bio.io.wwpdb.PDBFileBuilder.finalize	csb.bio.io.wwpdb.PDBFileBuilder-class.html#finalize
csb.bio.io.wwpdb.PDBFileBuilder.add_header	csb.bio.io.wwpdb.PDBFileBuilder-class.html#add_header
csb.bio.io.wwpdb.FileBuilder._abc_negative_cache_version	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.FileBuilder.output	csb.bio.io.wwpdb.FileBuilder-class.html#output
csb.bio.io.wwpdb.FileBuilder._abc_registry	csb.bio.io.wwpdb.FileBuilder-class.html#_abc_registry
csb.bio.io.wwpdb.PDBHeaderParser	csb.bio.io.wwpdb.PDBHeaderParser-class.html
csb.bio.io.wwpdb.PDBHeaderParser._parse_atoms	csb.bio.io.wwpdb.PDBHeaderParser-class.html#_parse_atoms
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csb.bio.io.wwpdb.AbstractStructureParser._abc_negative_cache	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_negative_cache
csb.bio.io.wwpdb.AbstractStructureParser.guess_chain_type	csb.bio.io.wwpdb.AbstractStructureParser-class.html#guess_chain_type
csb.bio.io.wwpdb.AbstractStructureParser._map_residues	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_map_residues
csb.bio.io.wwpdb.AbstractStructureParser.parse	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse
csb.bio.io.wwpdb.AbstractStructureParser._read_atom	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_atom
csb.bio.io.wwpdb.AbstractStructureParser._read_residue	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_residue
csb.bio.io.wwpdb.RegularStructureParser._parse_seqres_line	csb.bio.io.wwpdb.RegularStructureParser-class.html#_parse_seqres_line
csb.bio.io.wwpdb.AbstractStructureParser._read_model	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_model
csb.bio.io.wwpdb.AbstractStructureParser.__init__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__init__
csb.bio.io.wwpdb.AbstractStructureParser.mapper	csb.bio.io.wwpdb.AbstractStructureParser-class.html#mapper
csb.bio.io.wwpdb.AbstractStructureParser._abc_cache	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_cache
csb.bio.io.wwpdb.AbstractStructureParser._read_residue_raw	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_residue_raw
csb.bio.io.wwpdb.AbstractStructureParser._parse_model_line	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_model_line
csb.bio.io.wwpdb.RegularStructureParser.__abstractmethods__	csb.bio.io.wwpdb.RegularStructureParser-class.html#__abstractmethods__
csb.bio.io.wwpdb.AbstractStructureParser.filename	csb.bio.io.wwpdb.AbstractStructureParser-class.html#filename
csb.bio.io.wwpdb.AbstractStructureParser.__del__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__del__
csb.bio.io.wwpdb.AbstractStructureParser._read_chain_id	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_chain_id
csb.bio.io.wwpdb.AbstractStructureParser._scroll_model	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_scroll_model
csb.bio.io.wwpdb.AbstractStructureParser._read_bfactor	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_bfactor
csb.bio.io.wwpdb.AbstractStructureParser.parse_residue_safe	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_residue_safe
csb.bio.io.wwpdb.AbstractStructureParser.create_parser	csb.bio.io.wwpdb.AbstractStructureParser-class.html#create_parser
csb.bio.io.wwpdb.AbstractStructureParser.models	csb.bio.io.wwpdb.AbstractStructureParser-class.html#models
csb.bio.io.wwpdb.AbstractStructureParser.parse_residue	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_residue
csb.bio.io.wwpdb.AbstractStructureParser.guess_sequence_type	csb.bio.io.wwpdb.AbstractStructureParser-class.html#guess_sequence_type
csb.bio.io.wwpdb.AbstractStructureParser._read_insertion_code	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_insertion_code
csb.bio.io.wwpdb.AbstractStructureParser._parse_remarks	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_remarks
csb.bio.io.wwpdb.RegularStructureParser._add_chains	csb.bio.io.wwpdb.RegularStructureParser-class.html#_add_chains
csb.bio.io.wwpdb.AbstractStructureParser._read_sequence_number	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_sequence_number
csb.bio.io.wwpdb.AbstractStructureParser._read_charge	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_charge
csb.bio.io.wwpdb.AbstractStructureParser._parse_atom_line	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_atom_line
csb.bio.io.wwpdb.AbstractStructureParser.parse_models	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_models
csb.bio.io.wwpdb.AbstractStructureParser._read_occupancy	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_occupancy
csb.bio.io.wwpdb.AbstractStructureParser._read_element	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_element
csb.bio.io.wwpdb.AbstractStructureParser._abc_registry	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_registry
csb.bio.io.wwpdb.PDBHeaderParser._parse_ss	csb.bio.io.wwpdb.PDBHeaderParser-class.html#_parse_ss
csb.bio.io.wwpdb.AbstractStructureParser.parse_biomolecule	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_biomolecule
csb.bio.io.wwpdb.PDBHeaderParser._parse_header	csb.bio.io.wwpdb.PDBHeaderParser-class.html#_parse_header
csb.bio.io.wwpdb.AbstractStructureParser._abc_negative_cache_version	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.AbstractStructureParser.parse_structure	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_structure
csb.bio.io.wwpdb.AbstractStructureParser._read_alternate	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_alternate
csb.bio.io.wwpdb.RegularStructureParser._read_resolution	csb.bio.io.wwpdb.RegularStructureParser-class.html#_read_resolution
csb.bio.io.wwpdb.PDBParseError	csb.bio.io.wwpdb.PDBParseError-class.html
csb.bio.io.wwpdb.RegularStructureParser	csb.bio.io.wwpdb.RegularStructureParser-class.html
csb.bio.io.wwpdb.AbstractStructureParser._parse_atoms	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_atoms
csb.bio.io.wwpdb.AbstractStructureParser.__metaclass__	abc.ABCMeta-class.html
csb.bio.io.wwpdb.AbstractStructureParser._abc_negative_cache	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_negative_cache
csb.bio.io.wwpdb.AbstractStructureParser.guess_chain_type	csb.bio.io.wwpdb.AbstractStructureParser-class.html#guess_chain_type
csb.bio.io.wwpdb.AbstractStructureParser._map_residues	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_map_residues
csb.bio.io.wwpdb.AbstractStructureParser.parse	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse
csb.bio.io.wwpdb.AbstractStructureParser._read_atom	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_atom
csb.bio.io.wwpdb.AbstractStructureParser._read_residue	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_residue
csb.bio.io.wwpdb.RegularStructureParser._parse_seqres_line	csb.bio.io.wwpdb.RegularStructureParser-class.html#_parse_seqres_line
csb.bio.io.wwpdb.AbstractStructureParser._read_model	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_model
csb.bio.io.wwpdb.AbstractStructureParser.__init__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__init__
csb.bio.io.wwpdb.AbstractStructureParser.mapper	csb.bio.io.wwpdb.AbstractStructureParser-class.html#mapper
csb.bio.io.wwpdb.AbstractStructureParser._abc_cache	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_cache
csb.bio.io.wwpdb.AbstractStructureParser._read_residue_raw	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_residue_raw
csb.bio.io.wwpdb.AbstractStructureParser._parse_model_line	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_model_line
csb.bio.io.wwpdb.RegularStructureParser.__abstractmethods__	csb.bio.io.wwpdb.RegularStructureParser-class.html#__abstractmethods__
csb.bio.io.wwpdb.AbstractStructureParser.filename	csb.bio.io.wwpdb.AbstractStructureParser-class.html#filename
csb.bio.io.wwpdb.AbstractStructureParser.__del__	csb.bio.io.wwpdb.AbstractStructureParser-class.html#__del__
csb.bio.io.wwpdb.AbstractStructureParser._read_chain_id	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_chain_id
csb.bio.io.wwpdb.AbstractStructureParser._scroll_model	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_scroll_model
csb.bio.io.wwpdb.AbstractStructureParser._read_bfactor	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_bfactor
csb.bio.io.wwpdb.AbstractStructureParser.parse_residue_safe	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_residue_safe
csb.bio.io.wwpdb.AbstractStructureParser.create_parser	csb.bio.io.wwpdb.AbstractStructureParser-class.html#create_parser
csb.bio.io.wwpdb.AbstractStructureParser.models	csb.bio.io.wwpdb.AbstractStructureParser-class.html#models
csb.bio.io.wwpdb.AbstractStructureParser.parse_residue	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_residue
csb.bio.io.wwpdb.AbstractStructureParser.guess_sequence_type	csb.bio.io.wwpdb.AbstractStructureParser-class.html#guess_sequence_type
csb.bio.io.wwpdb.AbstractStructureParser._read_insertion_code	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_insertion_code
csb.bio.io.wwpdb.AbstractStructureParser._parse_remarks	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_remarks
csb.bio.io.wwpdb.RegularStructureParser._add_chains	csb.bio.io.wwpdb.RegularStructureParser-class.html#_add_chains
csb.bio.io.wwpdb.AbstractStructureParser._read_sequence_number	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_sequence_number
csb.bio.io.wwpdb.AbstractStructureParser._read_charge	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_charge
csb.bio.io.wwpdb.AbstractStructureParser._parse_atom_line	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_atom_line
csb.bio.io.wwpdb.AbstractStructureParser.parse_models	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_models
csb.bio.io.wwpdb.AbstractStructureParser._read_occupancy	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_occupancy
csb.bio.io.wwpdb.AbstractStructureParser._read_element	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_element
csb.bio.io.wwpdb.AbstractStructureParser._abc_registry	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_registry
csb.bio.io.wwpdb.AbstractStructureParser._parse_ss	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_parse_ss
csb.bio.io.wwpdb.AbstractStructureParser.parse_biomolecule	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_biomolecule
csb.bio.io.wwpdb.RegularStructureParser._parse_header	csb.bio.io.wwpdb.RegularStructureParser-class.html#_parse_header
csb.bio.io.wwpdb.AbstractStructureParser._abc_negative_cache_version	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.AbstractStructureParser.parse_structure	csb.bio.io.wwpdb.AbstractStructureParser-class.html#parse_structure
csb.bio.io.wwpdb.AbstractStructureParser._read_alternate	csb.bio.io.wwpdb.AbstractStructureParser-class.html#_read_alternate
csb.bio.io.wwpdb.RegularStructureParser._read_resolution	csb.bio.io.wwpdb.RegularStructureParser-class.html#_read_resolution
csb.bio.io.wwpdb.RemoteStructureProvider	csb.bio.io.wwpdb.RemoteStructureProvider-class.html
csb.bio.io.wwpdb.StructureProvider.__metaclass__	abc.ABCMeta-class.html
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csb.bio.io.wwpdb.StructureProvider._abc_negative_cache	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_negative_cache
csb.bio.io.wwpdb.RemoteStructureProvider.prefix	csb.bio.io.wwpdb.RemoteStructureProvider-class.html#prefix
csb.bio.io.wwpdb.RemoteStructureProvider._find	csb.bio.io.wwpdb.RemoteStructureProvider-class.html#_find
csb.bio.io.wwpdb.RemoteStructureProvider.find	csb.bio.io.wwpdb.RemoteStructureProvider-class.html#find
csb.bio.io.wwpdb.RemoteStructureProvider.__init__	csb.bio.io.wwpdb.RemoteStructureProvider-class.html#__init__
csb.bio.io.wwpdb.StructureProvider._abc_cache	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_cache
csb.bio.io.wwpdb.RemoteStructureProvider.__abstractmethods__	csb.bio.io.wwpdb.RemoteStructureProvider-class.html#__abstractmethods__
csb.bio.io.wwpdb.StructureProvider.__getitem__	csb.bio.io.wwpdb.StructureProvider-class.html#__getitem__
csb.bio.io.wwpdb.RemoteStructureProvider.get	csb.bio.io.wwpdb.RemoteStructureProvider-class.html#get
csb.bio.io.wwpdb.StructureProvider._abc_negative_cache_version	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_negative_cache_version
csb.bio.io.wwpdb.StructureProvider._abc_registry	csb.bio.io.wwpdb.StructureProvider-class.html#_abc_registry
csb.bio.io.wwpdb.ResidueInfo	csb.bio.io.wwpdb.ResidueInfo-class.html
csb.bio.io.wwpdb.ResidueInfo.chain	csb.bio.io.wwpdb.ResidueInfo-class.html#chain
csb.bio.io.wwpdb.ResidueInfo.insertion_code	csb.bio.io.wwpdb.ResidueInfo-class.html#insertion_code
csb.bio.io.wwpdb.ResidueInfo.rank	csb.bio.io.wwpdb.ResidueInfo-class.html#rank
csb.bio.io.wwpdb.ResidueInfo.id	csb.bio.io.wwpdb.ResidueInfo-class.html#id
csb.bio.io.wwpdb.ResidueInfo.__init__	csb.bio.io.wwpdb.ResidueInfo-class.html#__init__
csb.bio.io.wwpdb.ResidueInfo.label	csb.bio.io.wwpdb.ResidueInfo-class.html#label
csb.bio.io.wwpdb.ResidueInfo.type	csb.bio.io.wwpdb.ResidueInfo-class.html#type
csb.bio.io.wwpdb.ResidueInfo.is_modified	csb.bio.io.wwpdb.ResidueInfo-class.html#is_modified
csb.bio.io.wwpdb.ResidueInfo.atoms	csb.bio.io.wwpdb.ResidueInfo-class.html#atoms
csb.bio.io.wwpdb.ResidueInfo.sequence_number	csb.bio.io.wwpdb.ResidueInfo-class.html#sequence_number
csb.bio.io.wwpdb.ResidueMappingError	csb.bio.io.wwpdb.ResidueMappingError-class.html
csb.bio.io.wwpdb.RobustResidueMapper	csb.bio.io.wwpdb.RobustResidueMapper-class.html
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csb.bio.io.wwpdb.RobustResidueMapper.GlobalAligner	csb.bio.io.wwpdb.RobustResidueMapper.GlobalAligner-class.html
csb.bio.io.wwpdb.RobustResidueMapper.__init__	csb.bio.io.wwpdb.RobustResidueMapper-class.html#__init__
csb.bio.io.wwpdb.AbstractResidueMapper._abc_cache	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_cache
csb.bio.io.wwpdb.RobustResidueMapper.__abstractmethods__	csb.bio.io.wwpdb.RobustResidueMapper-class.html#__abstractmethods__
csb.bio.io.wwpdb.RobustResidueMapper.map	csb.bio.io.wwpdb.RobustResidueMapper-class.html#map
csb.bio.io.wwpdb.AbstractResidueMapper._build	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_build
csb.bio.io.wwpdb.AbstractResidueMapper.create_gap	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#create_gap
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csb.bio.io.wwpdb.AbstractResidueMapper._abc_registry	csb.bio.io.wwpdb.AbstractResidueMapper-class.html#_abc_registry
csb.bio.io.wwpdb.RobustResidueMapper.GlobalAligner	csb.bio.io.wwpdb.RobustResidueMapper.GlobalAligner-class.html
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csb.bio.sequence.alignment.GlobalAlignmentAlgorithm._expandable	csb.bio.sequence.alignment.GlobalAlignmentAlgorithm-class.html#_expandable
csb.bio.io.wwpdb.RobustResidueMapper.GlobalAligner._sequence	csb.bio.io.wwpdb.RobustResidueMapper.GlobalAligner-class.html#_sequence
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csb.bio.sequence.alignment.GlobalAlignmentAlgorithm.__init__	csb.bio.sequence.alignment.GlobalAlignmentAlgorithm-class.html#__init__
csb.bio.sequence.alignment.AbstractAlignmentAlgorithm._abc_cache	csb.bio.sequence.alignment.AbstractAlignmentAlgorithm-class.html#_abc_cache
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csb.bio.sequence.alignment.GlobalAlignmentAlgorithm.__abstractmethods__	csb.bio.sequence.alignment.GlobalAlignmentAlgorithm-class.html#__abstractmethods__
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csb.bio.sequence.alignment.AbstractAlignmentAlgorithm._score	csb.bio.sequence.alignment.AbstractAlignmentAlgorithm-class.html#_score
csb.bio.sequence.alignment.AbstractAlignmentAlgorithm.scoring_matrix	csb.bio.sequence.alignment.AbstractAlignmentAlgorithm-class.html#scoring_matrix
csb.bio.sequence.alignment.AbstractAlignmentAlgorithm.gap	csb.bio.sequence.alignment.AbstractAlignmentAlgorithm-class.html#gap
csb.bio.sequence.alignment.GlobalAlignmentAlgorithm._initialize	csb.bio.sequence.alignment.GlobalAlignmentAlgorithm-class.html#_initialize
csb.bio.sequence.alignment.GlobalAlignmentAlgorithm._max	csb.bio.sequence.alignment.GlobalAlignmentAlgorithm-class.html#_max
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csb.bio.sequence.AbstractSequence.header	csb.bio.sequence.AbstractSequence-class.html#header
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csb.bio.sequence.AbstractSequence.extract	csb.bio.sequence.AbstractSequence-class.html#extract
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csb.bio.sequence.AbstractSequence.__init__	csb.bio.sequence.AbstractSequence-class.html#__init__
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csb.bio.sequence.SequenceAdapter._factory	csb.bio.sequence.SequenceAdapter-class.html#_factory
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csb.bio.sequence.AlignmentFormats._namesci	csb.bio.sequence.AlignmentFormats-class.html#_namesci
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csb.bio.sequence.AlignmentRowsTable	csb.bio.sequence.AlignmentRowsTable-class.html
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csb.bio.sequence.AlignmentRowsTable.__init__	csb.bio.sequence.AlignmentRowsTable-class.html#__init__
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csb.bio.sequence.AlignmentTypes	csb.bio.sequence.AlignmentTypes-class.html
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csb.bio.sequence.AbstractSequence.extract	csb.bio.sequence.AbstractSequence-class.html#extract
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csb.bio.sequence.AbstractSequence.__init__	csb.bio.sequence.AbstractSequence-class.html#__init__
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csb.bio.sequence.AbstractSequence.__iter__	csb.bio.sequence.AbstractSequence-class.html#__iter__
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csb.bio.sequence.ColumnIndexer	csb.bio.sequence.ColumnIndexer-class.html
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csb.bio.sequence.SequenceIndexer.__iter__	csb.bio.sequence.SequenceIndexer-class.html#__iter__
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csb.bio.sequence.ColumnInfo	csb.bio.sequence.ColumnInfo-class.html
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csb.bio.sequence.DuplicateSequenceError	csb.bio.sequence.DuplicateSequenceError-class.html
csb.bio.sequence.NucleicAlphabet	csb.bio.sequence.NucleicAlphabet-class.html
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csb.bio.sequence.NucleicAlphabet.NotG	csb.bio.sequence.NucleicAlphabet-class.html#NotG
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csb.bio.sequence.PositionError	csb.bio.sequence.PositionError-class.html
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csb.bio.sequence.ProteinAlphabet	csb.bio.sequence.ProteinAlphabet-class.html
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csb.bio.sequence.ResidueInfo.__init__	csb.bio.sequence.ResidueInfo-class.html#__init__
csb.bio.sequence.RichSequence	csb.bio.sequence.RichSequence-class.html
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csb.bio.sequence.AbstractSequence.dump	csb.bio.sequence.AbstractSequence-class.html#dump
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csb.bio.sequence.AbstractSequence._factory	csb.bio.sequence.AbstractSequence-class.html#_factory
csb.bio.sequence.RichSequence._add	csb.bio.sequence.RichSequence-class.html#_add
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csb.bio.sequence.AbstractSequence.extract	csb.bio.sequence.AbstractSequence-class.html#extract
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csb.bio.sequence.AbstractSequence.__init__	csb.bio.sequence.AbstractSequence-class.html#__init__
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csb.bio.sequence.RichSequence.create	csb.bio.sequence.RichSequence-class.html#create
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csb.bio.sequence.AbstractSequence.__len__	csb.bio.sequence.AbstractSequence-class.html#__len__
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csb.bio.sequence.AbstractSequence.residues	csb.bio.sequence.AbstractSequence-class.html#residues
csb.bio.sequence.RichSequence._get	csb.bio.sequence.RichSequence-class.html#_get
csb.bio.sequence.AbstractSequence.DELIMITER	csb.bio.sequence.AbstractSequence-class.html#DELIMITER
csb.bio.sequence.AbstractSequence.__iter__	csb.bio.sequence.AbstractSequence-class.html#__iter__
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csb.bio.sequence.AbstractSequence.__repr__	csb.bio.sequence.AbstractSequence-class.html#__repr__
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csb.bio.sequence.Sequence	csb.bio.sequence.Sequence-class.html
csb.bio.sequence.AbstractSequence.__metaclass__	abc.ABCMeta-class.html
csb.bio.sequence.AbstractSequence.dump	csb.bio.sequence.AbstractSequence-class.html#dump
csb.bio.sequence.Sequence.sequence	csb.bio.sequence.Sequence-class.html#sequence
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csb.bio.sequence.AbstractSequence.__str__	csb.bio.sequence.AbstractSequence-class.html#__str__
csb.bio.sequence.AbstractSequence._factory	csb.bio.sequence.AbstractSequence-class.html#_factory
csb.bio.sequence.Sequence._add	csb.bio.sequence.Sequence-class.html#_add
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csb.bio.sequence.Sequence.extract	csb.bio.sequence.Sequence-class.html#extract
csb.bio.sequence.AbstractSequence.id	csb.bio.sequence.AbstractSequence-class.html#id
csb.bio.sequence.Sequence.__init__	csb.bio.sequence.Sequence-class.html#__init__
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csb.bio.sequence.Sequence.__abstractmethods__	csb.bio.sequence.Sequence-class.html#__abstractmethods__
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csb.bio.sequence.AbstractSequence.__len__	csb.bio.sequence.AbstractSequence-class.html#__len__
csb.bio.sequence.AbstractSequence.__getitem__	csb.bio.sequence.AbstractSequence-class.html#__getitem__
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csb.bio.structure.ChemElements.Mo	csb.bio.structure.ChemElements-class.html#Mo
csb.bio.structure.CompositeEntityIterator	csb.bio.structure.CompositeEntityIterator-class.html
csb.bio.structure.CompositeEntityIterator.create	csb.bio.structure.CompositeEntityIterator-class.html#create
csb.bio.structure.CompositeEntityIterator.__next__	csb.bio.structure.CompositeEntityIterator-class.html#__next__
csb.bio.structure.CompositeEntityIterator.next	csb.bio.structure.CompositeEntityIterator-class.html#next
csb.bio.structure.CompositeEntityIterator.__iter__	csb.bio.structure.CompositeEntityIterator-class.html#__iter__
csb.bio.structure.CompositeEntityIterator._inspect	csb.bio.structure.CompositeEntityIterator-class.html#_inspect
csb.bio.structure.CompositeEntityIterator.__init__	csb.bio.structure.CompositeEntityIterator-class.html#__init__
csb.bio.structure.ConfinedEntityIterator	csb.bio.structure.ConfinedEntityIterator-class.html
csb.bio.structure.CompositeEntityIterator.create	csb.bio.structure.CompositeEntityIterator-class.html#create
csb.bio.structure.CompositeEntityIterator.__next__	csb.bio.structure.CompositeEntityIterator-class.html#__next__
csb.bio.structure.CompositeEntityIterator.next	csb.bio.structure.CompositeEntityIterator-class.html#next
csb.bio.structure.CompositeEntityIterator.__iter__	csb.bio.structure.CompositeEntityIterator-class.html#__iter__
csb.bio.structure.ConfinedEntityIterator._inspect	csb.bio.structure.ConfinedEntityIterator-class.html#_inspect
csb.bio.structure.ConfinedEntityIterator.__init__	csb.bio.structure.ConfinedEntityIterator-class.html#__init__
csb.bio.structure.DisorderedAtom	csb.bio.structure.DisorderedAtom-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.core.CollectionContainer._update	csb.core.CollectionContainer-class.html#_update
csb.bio.structure.AbstractEntity.__metaclass__	abc.ABCMeta-class.html
csb.bio.structure.AbstractEntity._abc_negative_cache	csb.bio.structure.AbstractEntity-class.html#_abc_negative_cache
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.bio.structure.Atom.__lt__	csb.bio.structure.Atom-class.html#__lt__
csb.bio.structure.DisorderedAtom.find	csb.bio.structure.DisorderedAtom-class.html#find
csb.bio.structure.DisorderedAtom.append	csb.bio.structure.DisorderedAtom-class.html#append
csb.bio.structure.Atom.residue	csb.bio.structure.Atom-class.html#residue
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.bio.structure.Atom.__abstractmethods__	csb.bio.structure.Atom-class.html#__abstractmethods__
csb.bio.structure.DisorderedAtom.transform	csb.bio.structure.DisorderedAtom-class.html#transform
csb.bio.structure.DisorderedAtom.__getattr__	csb.bio.structure.DisorderedAtom-class.html#__getattr__
csb.bio.structure.Atom.charge	csb.bio.structure.Atom-class.html#charge
csb.bio.structure.Atom.get_coordinates	csb.bio.structure.Atom-class.html#get_coordinates
csb.bio.structure.DisorderedAtom.__init__	csb.bio.structure.DisorderedAtom-class.html#__init__
csb.bio.structure.Atom.serial_number	csb.bio.structure.Atom-class.html#serial_number
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.bio.structure.DisorderedAtom.__update_rep	csb.bio.structure.DisorderedAtom-class.html#__update_rep
csb.bio.structure.Atom.alternate	csb.bio.structure.Atom-class.html#alternate
csb.bio.structure.Atom.occupancy	csb.bio.structure.Atom-class.html#occupancy
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.bio.structure.Atom.clone	csb.bio.structure.Atom-class.html#clone
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.bio.structure.Atom.name	csb.bio.structure.Atom-class.html#name
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.bio.structure.Atom.items	csb.bio.structure.Atom-class.html#items
csb.bio.structure.Atom.bfactor	csb.bio.structure.Atom-class.html#bfactor
csb.bio.structure.Atom.element	csb.bio.structure.Atom-class.html#element
csb.bio.structure.AbstractEntity._abc_cache	csb.bio.structure.AbstractEntity-class.html#_abc_cache
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.bio.structure.Atom.vector	csb.bio.structure.Atom-class.html#vector
csb.bio.structure.AbstractEntity._abc_negative_cache_version	csb.bio.structure.AbstractEntity-class.html#_abc_negative_cache_version
csb.bio.structure.DisorderedAtom.__repr__	csb.bio.structure.DisorderedAtom-class.html#__repr__
csb.bio.structure.AbstractEntity.components	csb.bio.structure.AbstractEntity-class.html#components
csb.bio.structure.AbstractEntity._abc_registry	csb.bio.structure.AbstractEntity-class.html#_abc_registry
csb.bio.structure.DuplicateAtomIDError	csb.bio.structure.DuplicateAtomIDError-class.html
csb.bio.structure.DuplicateChainIDError	csb.bio.structure.DuplicateChainIDError-class.html
csb.bio.structure.DuplicateModelIDError	csb.bio.structure.DuplicateModelIDError-class.html
csb.bio.structure.DuplicateResidueIDError	csb.bio.structure.DuplicateResidueIDError-class.html
csb.bio.structure.Ensemble	csb.bio.structure.Ensemble-class.html
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.bio.structure.Ensemble._children	csb.bio.structure.Ensemble-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.bio.structure.Ensemble.__init__	csb.bio.structure.Ensemble-class.html#__init__
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.bio.structure.Ensemble.to_pdb	csb.bio.structure.Ensemble-class.html#to_pdb
csb.bio.structure.Ensemble.__abstractmethods__	csb.bio.structure.Ensemble-class.html#__abstractmethods__
csb.bio.structure.AbstractEntity.transform	csb.bio.structure.AbstractEntity-class.html#transform
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.core.AbstractNIContainer.__getitem__	csb.core.AbstractNIContainer-class.html#__getitem__
csb.bio.structure.Ensemble.models	csb.bio.structure.Ensemble-class.html#models
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.bio.structure.Ensemble.items	csb.bio.structure.Ensemble-class.html#items
csb.bio.structure.AbstractEntity.get_coordinates	csb.bio.structure.AbstractEntity-class.html#get_coordinates
csb.bio.structure.Ensemble._abc_negative_cache_version	csb.bio.structure.Ensemble-class.html#_abc_negative_cache_version
csb.bio.structure.Ensemble.__repr__	csb.bio.structure.Ensemble-class.html#__repr__
csb.bio.structure.AbstractEntity.components	csb.bio.structure.AbstractEntity-class.html#components
csb.bio.structure.Ensemble.first_model	csb.bio.structure.Ensemble-class.html#first_model
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.bio.structure.EnsembleModelsCollection	csb.bio.structure.EnsembleModelsCollection-class.html
csb.bio.structure.EnsembleModelsCollection._exception	csb.bio.structure.EnsembleModelsCollection-class.html#_exception
csb.core.CollectionContainer._update	csb.core.CollectionContainer-class.html#_update
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.bio.structure.EnsembleModelsCollection.__init__	csb.bio.structure.EnsembleModelsCollection-class.html#__init__
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.bio.structure.EnsembleModelsCollection.append	csb.bio.structure.EnsembleModelsCollection-class.html#append
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.core.BaseCollectionContainer.__repr__	csb.core.BaseCollectionContainer-class.html#__repr__
csb.bio.structure.EntityIndexError	csb.bio.structure.EntityIndexError-class.html
csb.bio.structure.EntityNotFoundError	csb.bio.structure.EntityNotFoundError-class.html
csb.bio.structure.InvalidOperation	csb.bio.structure.InvalidOperation-class.html
csb.bio.structure.Missing3DStructureError	csb.bio.structure.Missing3DStructureError-class.html
csb.bio.structure.NucleicResidue	csb.bio.structure.NucleicResidue-class.html
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.bio.structure.Residue._children	csb.bio.structure.Residue-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.bio.structure.Residue.rank	csb.bio.structure.Residue-class.html#rank
csb.bio.structure.Residue.id	csb.bio.structure.Residue-class.html#id
csb.bio.structure.NucleicResidue.__init__	csb.bio.structure.NucleicResidue-class.html#__init__
csb.bio.structure.Residue.torsion	csb.bio.structure.Residue-class.html#torsion
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.bio.structure.Residue.create	csb.bio.structure.Residue-class.html#create
csb.bio.structure.Residue.__abstractmethods__	csb.bio.structure.Residue-class.html#__abstractmethods__
csb.bio.structure.AbstractEntity.transform	csb.bio.structure.AbstractEntity-class.html#transform
csb.bio.structure.Residue.label	csb.bio.structure.Residue-class.html#label
csb.bio.structure.Residue.type	csb.bio.structure.Residue-class.html#type
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.core.AbstractNIContainer.__getitem__	csb.core.AbstractNIContainer-class.html#__getitem__
csb.bio.structure.Residue.clone	csb.bio.structure.Residue-class.html#clone
csb.bio.structure.NucleicResidue.is_modified	csb.bio.structure.NucleicResidue-class.html#is_modified
csb.bio.structure.Residue.atoms	csb.bio.structure.Residue-class.html#atoms
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.bio.structure.Residue.secondary_structure	csb.bio.structure.Residue-class.html#secondary_structure
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.bio.structure.Residue.insertion_code	csb.bio.structure.Residue-class.html#insertion_code
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.bio.structure.Residue.items	csb.bio.structure.Residue-class.html#items
csb.bio.structure.Residue.get_coordinates	csb.bio.structure.Residue-class.html#get_coordinates
csb.bio.structure.Residue._abc_negative_cache_version	csb.bio.structure.Residue-class.html#_abc_negative_cache_version
csb.bio.structure.Residue.__repr__	csb.bio.structure.Residue-class.html#__repr__
csb.bio.structure.AbstractEntity.components	csb.bio.structure.AbstractEntity-class.html#components
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.bio.structure.Residue.sequence_number	csb.bio.structure.Residue-class.html#sequence_number
csb.bio.structure.Residue.has_structure	csb.bio.structure.Residue-class.html#has_structure
csb.bio.structure.ProteinResidue	csb.bio.structure.ProteinResidue-class.html
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.bio.structure.Residue._children	csb.bio.structure.Residue-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.bio.structure.Residue.rank	csb.bio.structure.Residue-class.html#rank
csb.bio.structure.ProteinResidue.compute_torsion	csb.bio.structure.ProteinResidue-class.html#compute_torsion
csb.bio.structure.Residue.id	csb.bio.structure.Residue-class.html#id
csb.bio.structure.ProteinResidue.__init__	csb.bio.structure.ProteinResidue-class.html#__init__
csb.bio.structure.Residue.torsion	csb.bio.structure.Residue-class.html#torsion
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.bio.structure.Residue.create	csb.bio.structure.Residue-class.html#create
csb.bio.structure.Residue.__abstractmethods__	csb.bio.structure.Residue-class.html#__abstractmethods__
csb.bio.structure.AbstractEntity.transform	csb.bio.structure.AbstractEntity-class.html#transform
csb.bio.structure.Residue.label	csb.bio.structure.Residue-class.html#label
csb.bio.structure.Residue.type	csb.bio.structure.Residue-class.html#type
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.core.AbstractNIContainer.__getitem__	csb.core.AbstractNIContainer-class.html#__getitem__
csb.bio.structure.Residue.clone	csb.bio.structure.Residue-class.html#clone
csb.bio.structure.Residue.is_modified	csb.bio.structure.Residue-class.html#is_modified
csb.bio.structure.Residue.atoms	csb.bio.structure.Residue-class.html#atoms
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.bio.structure.Residue.secondary_structure	csb.bio.structure.Residue-class.html#secondary_structure
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.bio.structure.Residue.insertion_code	csb.bio.structure.Residue-class.html#insertion_code
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.bio.structure.Residue.items	csb.bio.structure.Residue-class.html#items
csb.bio.structure.Residue.get_coordinates	csb.bio.structure.Residue-class.html#get_coordinates
csb.bio.structure.Residue._abc_negative_cache_version	csb.bio.structure.Residue-class.html#_abc_negative_cache_version
csb.bio.structure.Residue.__repr__	csb.bio.structure.Residue-class.html#__repr__
csb.bio.structure.AbstractEntity.components	csb.bio.structure.AbstractEntity-class.html#components
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.bio.structure.Residue.sequence_number	csb.bio.structure.Residue-class.html#sequence_number
csb.bio.structure.Residue.has_structure	csb.bio.structure.Residue-class.html#has_structure
csb.bio.structure.Residue	csb.bio.structure.Residue-class.html
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.bio.structure.Residue._children	csb.bio.structure.Residue-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.bio.structure.Residue.rank	csb.bio.structure.Residue-class.html#rank
csb.bio.structure.Residue.id	csb.bio.structure.Residue-class.html#id
csb.bio.structure.Residue.__init__	csb.bio.structure.Residue-class.html#__init__
csb.bio.structure.Residue.torsion	csb.bio.structure.Residue-class.html#torsion
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.bio.structure.Residue.create	csb.bio.structure.Residue-class.html#create
csb.bio.structure.Residue.__abstractmethods__	csb.bio.structure.Residue-class.html#__abstractmethods__
csb.bio.structure.AbstractEntity.transform	csb.bio.structure.AbstractEntity-class.html#transform
csb.bio.structure.Residue.label	csb.bio.structure.Residue-class.html#label
csb.bio.structure.Residue.type	csb.bio.structure.Residue-class.html#type
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.core.AbstractNIContainer.__getitem__	csb.core.AbstractNIContainer-class.html#__getitem__
csb.bio.structure.Residue.clone	csb.bio.structure.Residue-class.html#clone
csb.bio.structure.Residue.is_modified	csb.bio.structure.Residue-class.html#is_modified
csb.bio.structure.Residue.atoms	csb.bio.structure.Residue-class.html#atoms
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.bio.structure.Residue.secondary_structure	csb.bio.structure.Residue-class.html#secondary_structure
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.bio.structure.Residue.insertion_code	csb.bio.structure.Residue-class.html#insertion_code
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.bio.structure.Residue.items	csb.bio.structure.Residue-class.html#items
csb.bio.structure.Residue.get_coordinates	csb.bio.structure.Residue-class.html#get_coordinates
csb.bio.structure.Residue._abc_negative_cache_version	csb.bio.structure.Residue-class.html#_abc_negative_cache_version
csb.bio.structure.Residue.__repr__	csb.bio.structure.Residue-class.html#__repr__
csb.bio.structure.AbstractEntity.components	csb.bio.structure.AbstractEntity-class.html#components
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.bio.structure.Residue.sequence_number	csb.bio.structure.Residue-class.html#sequence_number
csb.bio.structure.Residue.has_structure	csb.bio.structure.Residue-class.html#has_structure
csb.bio.structure.ResidueAtomsTable	csb.bio.structure.ResidueAtomsTable-class.html
csb.bio.structure.ResidueAtomsTable._exception	csb.bio.structure.ResidueAtomsTable-class.html#_exception
csb.core.DictionaryContainer._update	csb.core.DictionaryContainer-class.html#_update
csb.bio.structure.ResidueAtomsTable.append	csb.bio.structure.ResidueAtomsTable-class.html#append
csb.core.BaseDictionaryContainer.__contains__	csb.core.BaseDictionaryContainer-class.html#__contains__
csb.core.BaseDictionaryContainer._getinternal	csb.core.BaseDictionaryContainer-class.html#_getinternal
csb.core.DictionaryContainer._remove	csb.core.DictionaryContainer-class.html#_remove
csb.bio.structure.ResidueAtomsTable.__init__	csb.bio.structure.ResidueAtomsTable-class.html#__init__
csb.core.BaseDictionaryContainer._set_items	csb.core.BaseDictionaryContainer-class.html#_set_items
csb.core.BaseDictionaryContainer._update_items	csb.core.BaseDictionaryContainer-class.html#_update_items
csb.core.BaseDictionaryContainer.__len__	csb.core.BaseDictionaryContainer-class.html#__len__
csb.core.BaseDictionaryContainer.__getitem__	csb.core.BaseDictionaryContainer-class.html#__getitem__
csb.core.BaseDictionaryContainer.keys	csb.core.BaseDictionaryContainer-class.html#keys
csb.bio.structure.ResidueAtomsTable.update	csb.bio.structure.ResidueAtomsTable-class.html#update
csb.core.BaseDictionaryContainer.__iter__	csb.core.BaseDictionaryContainer-class.html#__iter__
csb.core.BaseDictionaryContainer.__bool__	csb.core.BaseDictionaryContainer-class.html#__bool__
csb.core.BaseDictionaryContainer._append_item	csb.core.BaseDictionaryContainer-class.html#_append_item
csb.core.BaseDictionaryContainer.__nonzero__	csb.core.BaseDictionaryContainer-class.html#__nonzero__
csb.core.BaseDictionaryContainer.length	csb.core.BaseDictionaryContainer-class.html#length
csb.core.BaseDictionaryContainer._remove_item	csb.core.BaseDictionaryContainer-class.html#_remove_item
csb.bio.structure.ResidueAtomsTable.__repr__	csb.bio.structure.ResidueAtomsTable-class.html#__repr__
csb.core.DictionaryContainer._set	csb.core.DictionaryContainer-class.html#_set
csb.bio.structure.SecStructures	csb.bio.structure.SecStructures-class.html
csb.bio.structure.SecStructures.Helix3	csb.bio.structure.SecStructures-class.html#Helix3
csb.bio.structure.SecStructures.BetaBridge	csb.bio.structure.SecStructures-class.html#BetaBridge
csb.bio.structure.SecStructures.Helix	csb.bio.structure.SecStructures-class.html#Helix
csb.core.enum.__init__	csb.core.enum-class.html#__init__
csb.bio.structure.SecStructures._namesci	csb.bio.structure.SecStructures-class.html#_namesci
csb.bio.structure.SecStructures.Gap	csb.bio.structure.SecStructures-class.html#Gap
csb.bio.structure.SecStructures._valuesci	csb.bio.structure.SecStructures-class.html#_valuesci
csb.bio.structure.SecStructures.Coil	csb.bio.structure.SecStructures-class.html#Coil
csb.bio.structure.SecStructures.Strand	csb.bio.structure.SecStructures-class.html#Strand
csb.bio.structure.SecStructures.PiHelix	csb.bio.structure.SecStructures-class.html#PiHelix
csb.bio.structure.SecStructures._names	csb.bio.structure.SecStructures-class.html#_names
csb.bio.structure.SecStructures.Turn	csb.bio.structure.SecStructures-class.html#Turn
csb.bio.structure.SecStructures._name	csb.bio.structure.SecStructures-class.html#_name
csb.bio.structure.SecStructures.Bend	csb.bio.structure.SecStructures-class.html#Bend
csb.bio.structure.SecStructures._values	csb.bio.structure.SecStructures-class.html#_values
csb.bio.structure.SecondaryStructure	csb.bio.structure.SecondaryStructure-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.core.CollectionContainer._update	csb.core.CollectionContainer-class.html#_update
csb.bio.structure.SecondaryStructure.to_three_state	csb.bio.structure.SecondaryStructure-class.html#to_three_state
csb.bio.structure.SecondaryStructure.scan	csb.bio.structure.SecondaryStructure-class.html#scan
csb.bio.structure.SecondaryStructure.__str__	csb.bio.structure.SecondaryStructure-class.html#__str__
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.bio.structure.SecondaryStructure.parse	csb.bio.structure.SecondaryStructure-class.html#parse
csb.bio.structure.SecondaryStructure.subregion	csb.bio.structure.SecondaryStructure-class.html#subregion
csb.bio.structure.SecondaryStructure.at	csb.bio.structure.SecondaryStructure-class.html#at
csb.bio.structure.SecondaryStructure.__init__	csb.bio.structure.SecondaryStructure-class.html#__init__
csb.bio.structure.SecondaryStructure.q3	csb.bio.structure.SecondaryStructure-class.html#q3
csb.bio.structure.SecondaryStructure.end	csb.bio.structure.SecondaryStructure-class.html#end
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.bio.structure.SecondaryStructure.start	csb.bio.structure.SecondaryStructure-class.html#start
csb.bio.structure.SecondaryStructure.append	csb.bio.structure.SecondaryStructure-class.html#append
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.bio.structure.SecondaryStructure.clone	csb.bio.structure.SecondaryStructure-class.html#clone
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.bio.structure.SecondaryStructure.to_string	csb.bio.structure.SecondaryStructure-class.html#to_string
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.core.BaseCollectionContainer.__repr__	csb.core.BaseCollectionContainer-class.html#__repr__
csb.bio.structure.SecondaryStructureElement	csb.bio.structure.SecondaryStructureElement-class.html
csb.bio.structure.SecondaryStructureElement.__str__	csb.bio.structure.SecondaryStructureElement-class.html#__str__
csb.bio.structure.SecondaryStructureElement.__lt__	csb.bio.structure.SecondaryStructureElement-class.html#__lt__
csb.bio.structure.SecondaryStructureElement.__init__	csb.bio.structure.SecondaryStructureElement-class.html#__init__
csb.bio.structure.SecondaryStructureElement.end	csb.bio.structure.SecondaryStructureElement-class.html#end
csb.bio.structure.SecondaryStructureElement.merge	csb.bio.structure.SecondaryStructureElement-class.html#merge
csb.bio.structure.SecondaryStructureElement.start	csb.bio.structure.SecondaryStructureElement-class.html#start
csb.bio.structure.SecondaryStructureElement.score	csb.bio.structure.SecondaryStructureElement-class.html#score
csb.bio.structure.SecondaryStructureElement.type	csb.bio.structure.SecondaryStructureElement-class.html#type
csb.bio.structure.SecondaryStructureElement.overlaps	csb.bio.structure.SecondaryStructureElement-class.html#overlaps
csb.bio.structure.SecondaryStructureElement.simplify	csb.bio.structure.SecondaryStructureElement-class.html#simplify
csb.bio.structure.SecondaryStructureElement.__eq__	csb.bio.structure.SecondaryStructureElement-class.html#__eq__
csb.bio.structure.SecondaryStructureElement.to_string	csb.bio.structure.SecondaryStructureElement-class.html#to_string
csb.bio.structure.SecondaryStructureElement.length	csb.bio.structure.SecondaryStructureElement-class.html#length
csb.bio.structure.SecondaryStructureElement.__repr__	csb.bio.structure.SecondaryStructureElement-class.html#__repr__
csb.bio.structure.Structure	csb.bio.structure.Structure-class.html
csb.bio.structure.Structure.from_chain	csb.bio.structure.Structure-class.html#from_chain
csb.bio.structure.Structure.to_fasta	csb.bio.structure.Structure-class.html#to_fasta
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.bio.structure.Structure._children	csb.bio.structure.Structure-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.bio.structure.Structure.accession	csb.bio.structure.Structure-class.html#accession
csb.bio.structure.Structure.__init__	csb.bio.structure.Structure-class.html#__init__
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.bio.structure.Structure.to_pdb	csb.bio.structure.Structure-class.html#to_pdb
csb.bio.structure.Structure.__abstractmethods__	csb.bio.structure.Structure-class.html#__abstractmethods__
csb.bio.structure.AbstractEntity.transform	csb.bio.structure.AbstractEntity-class.html#transform
csb.bio.structure.AbstractEntity.get_coordinates	csb.bio.structure.AbstractEntity-class.html#get_coordinates
csb.bio.structure.Structure.chains	csb.bio.structure.Structure-class.html#chains
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.bio.structure.Structure.model_id	csb.bio.structure.Structure-class.html#model_id
csb.core.AbstractNIContainer.__getitem__	csb.core.AbstractNIContainer-class.html#__getitem__
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.bio.structure.Structure.items	csb.bio.structure.Structure-class.html#items
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.bio.structure.Structure.first_chain	csb.bio.structure.Structure-class.html#first_chain
csb.bio.structure.Structure._abc_negative_cache_version	csb.bio.structure.Structure-class.html#_abc_negative_cache_version
csb.bio.structure.Structure.__repr__	csb.bio.structure.Structure-class.html#__repr__
csb.bio.structure.AbstractEntity.components	csb.bio.structure.AbstractEntity-class.html#components
csb.bio.structure.Structure.resolution	csb.bio.structure.Structure-class.html#resolution
csb.bio.structure.StructureChainsTable	csb.bio.structure.StructureChainsTable-class.html
csb.bio.structure.StructureChainsTable._exception	csb.bio.structure.StructureChainsTable-class.html#_exception
csb.core.DictionaryContainer._update	csb.core.DictionaryContainer-class.html#_update
csb.bio.structure.StructureChainsTable._update_chain_id	csb.bio.structure.StructureChainsTable-class.html#_update_chain_id
csb.bio.structure.StructureChainsTable.__init__	csb.bio.structure.StructureChainsTable-class.html#__init__
csb.core.BaseDictionaryContainer.__contains__	csb.core.BaseDictionaryContainer-class.html#__contains__
csb.core.BaseDictionaryContainer._getinternal	csb.core.BaseDictionaryContainer-class.html#_getinternal
csb.core.DictionaryContainer._remove	csb.core.DictionaryContainer-class.html#_remove
csb.bio.structure.StructureChainsTable.append	csb.bio.structure.StructureChainsTable-class.html#append
csb.core.BaseDictionaryContainer._set_items	csb.core.BaseDictionaryContainer-class.html#_set_items
csb.core.BaseDictionaryContainer._update_items	csb.core.BaseDictionaryContainer-class.html#_update_items
csb.core.BaseDictionaryContainer.__len__	csb.core.BaseDictionaryContainer-class.html#__len__
csb.core.BaseDictionaryContainer.__getitem__	csb.core.BaseDictionaryContainer-class.html#__getitem__
csb.core.BaseDictionaryContainer.keys	csb.core.BaseDictionaryContainer-class.html#keys
csb.core.BaseDictionaryContainer.__iter__	csb.core.BaseDictionaryContainer-class.html#__iter__
csb.core.BaseDictionaryContainer.__bool__	csb.core.BaseDictionaryContainer-class.html#__bool__
csb.core.BaseDictionaryContainer._append_item	csb.core.BaseDictionaryContainer-class.html#_append_item
csb.core.BaseDictionaryContainer.__nonzero__	csb.core.BaseDictionaryContainer-class.html#__nonzero__
csb.bio.structure.StructureChainsTable.remove	csb.bio.structure.StructureChainsTable-class.html#remove
csb.core.BaseDictionaryContainer.length	csb.core.BaseDictionaryContainer-class.html#length
csb.core.BaseDictionaryContainer._remove_item	csb.core.BaseDictionaryContainer-class.html#_remove_item
csb.bio.structure.StructureChainsTable.__repr__	csb.bio.structure.StructureChainsTable-class.html#__repr__
csb.core.DictionaryContainer._set	csb.core.DictionaryContainer-class.html#_set
csb.bio.structure.SuperimposeInfo	csb.bio.structure.SuperimposeInfo-class.html
csb.bio.structure.SuperimposeInfo.__init__	csb.bio.structure.SuperimposeInfo-class.html#__init__
csb.bio.structure.TorsionAngles	csb.bio.structure.TorsionAngles-class.html
csb.bio.structure.TorsionAngles.rad	csb.bio.structure.TorsionAngles-class.html#rad
csb.bio.structure.TorsionAngles.to_degrees	csb.bio.structure.TorsionAngles-class.html#to_degrees
csb.bio.structure.TorsionAngles.check_angle	csb.bio.structure.TorsionAngles-class.html#check_angle
csb.bio.structure.TorsionAngles.__init__	csb.bio.structure.TorsionAngles-class.html#__init__
csb.bio.structure.TorsionAngles.to_radians	csb.bio.structure.TorsionAngles-class.html#to_radians
csb.bio.structure.TorsionAngles.units	csb.bio.structure.TorsionAngles-class.html#units
csb.bio.structure.TorsionAngles.phi	csb.bio.structure.TorsionAngles-class.html#phi
csb.bio.structure.TorsionAngles.psi	csb.bio.structure.TorsionAngles-class.html#psi
csb.bio.structure.TorsionAngles.__bool__	csb.bio.structure.TorsionAngles-class.html#__bool__
csb.bio.structure.TorsionAngles.copy	csb.bio.structure.TorsionAngles-class.html#copy
csb.bio.structure.TorsionAngles.omega	csb.bio.structure.TorsionAngles-class.html#omega
csb.bio.structure.TorsionAngles.__nonzero__	csb.bio.structure.TorsionAngles-class.html#__nonzero__
csb.bio.structure.TorsionAngles.__repr__	csb.bio.structure.TorsionAngles-class.html#__repr__
csb.bio.structure.TorsionAngles.deg	csb.bio.structure.TorsionAngles-class.html#deg
csb.bio.structure.TorsionAnglesCollection	csb.bio.structure.TorsionAnglesCollection-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.core.CollectionContainer._update	csb.core.CollectionContainer-class.html#_update
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.core.CollectionContainer.append	csb.core.CollectionContainer-class.html#append
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.bio.structure.TorsionAnglesCollection.__init__	csb.bio.structure.TorsionAnglesCollection-class.html#__init__
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.bio.structure.TorsionAnglesCollection.phi	csb.bio.structure.TorsionAnglesCollection-class.html#phi
csb.bio.structure.TorsionAnglesCollection.psi	csb.bio.structure.TorsionAnglesCollection-class.html#psi
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.bio.structure.TorsionAnglesCollection.update	csb.bio.structure.TorsionAnglesCollection-class.html#update
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.bio.structure.TorsionAnglesCollection.omega	csb.bio.structure.TorsionAnglesCollection-class.html#omega
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.bio.structure.TorsionAnglesCollection.rmsd	csb.bio.structure.TorsionAnglesCollection-class.html#rmsd
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.bio.structure.TorsionAnglesCollection.__repr__	csb.bio.structure.TorsionAnglesCollection-class.html#__repr__
csb.bio.structure.UnknownResidue	csb.bio.structure.UnknownResidue-class.html
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.bio.structure.Residue._children	csb.bio.structure.Residue-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.bio.structure.Residue.rank	csb.bio.structure.Residue-class.html#rank
csb.bio.structure.Residue.id	csb.bio.structure.Residue-class.html#id
csb.bio.structure.UnknownResidue.__init__	csb.bio.structure.UnknownResidue-class.html#__init__
csb.bio.structure.Residue.torsion	csb.bio.structure.Residue-class.html#torsion
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.bio.structure.Residue.create	csb.bio.structure.Residue-class.html#create
csb.bio.structure.Residue.__abstractmethods__	csb.bio.structure.Residue-class.html#__abstractmethods__
csb.bio.structure.AbstractEntity.transform	csb.bio.structure.AbstractEntity-class.html#transform
csb.bio.structure.Residue.label	csb.bio.structure.Residue-class.html#label
csb.bio.structure.Residue.type	csb.bio.structure.Residue-class.html#type
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.core.AbstractNIContainer.__getitem__	csb.core.AbstractNIContainer-class.html#__getitem__
csb.bio.structure.Residue.clone	csb.bio.structure.Residue-class.html#clone
csb.bio.structure.Residue.is_modified	csb.bio.structure.Residue-class.html#is_modified
csb.bio.structure.Residue.atoms	csb.bio.structure.Residue-class.html#atoms
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.bio.structure.Residue.secondary_structure	csb.bio.structure.Residue-class.html#secondary_structure
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.bio.structure.Residue.insertion_code	csb.bio.structure.Residue-class.html#insertion_code
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.bio.structure.Residue.items	csb.bio.structure.Residue-class.html#items
csb.bio.structure.Residue.get_coordinates	csb.bio.structure.Residue-class.html#get_coordinates
csb.bio.structure.Residue._abc_negative_cache_version	csb.bio.structure.Residue-class.html#_abc_negative_cache_version
csb.bio.structure.Residue.__repr__	csb.bio.structure.Residue-class.html#__repr__
csb.bio.structure.AbstractEntity.components	csb.bio.structure.AbstractEntity-class.html#components
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.bio.structure.Residue.sequence_number	csb.bio.structure.Residue-class.html#sequence_number
csb.bio.structure.Residue.has_structure	csb.bio.structure.Residue-class.html#has_structure
csb.bio.structure.UnknownSecStructureError	csb.bio.structure.UnknownSecStructureError-class.html
csb.build.BuildTypes	csb.build.BuildTypes-class.html
csb.build.BuildTypes.BINARY	csb.build.BuildTypes-class.html#BINARY
csb.build.BuildTypes.get	csb.build.BuildTypes-class.html#get
csb.build.BuildTypes.SOURCE	csb.build.BuildTypes-class.html#SOURCE
csb.build.BuildTypes._du	csb.build.BuildTypes-class.html#_du
csb.build.Console	csb.build.Console-class.html
csb.build.Console._test	csb.build.Console-class.html#_test
csb.build.Console.USAGE	csb.build.Console-class.html#USAGE
csb.build.Console.PROGRAM	csb.build.Console-class.html#PROGRAM
csb.build.Console.__init__	csb.build.Console-class.html#__init__
csb.build.Console.log	csb.build.Console-class.html#log
csb.build.Console.exit	csb.build.Console-class.html#exit
csb.build.Console.build	csb.build.Console-class.html#build
csb.build.Console.input	csb.build.Console-class.html#input
csb.build.Console._compile	csb.build.Console-class.html#_compile
csb.build.Console._init	csb.build.Console-class.html#_init
csb.build.Console.run	csb.build.Console-class.html#run
csb.build.Console._revision	csb.build.Console-class.html#_revision
csb.build.Console.output	csb.build.Console-class.html#output
csb.build.Console._strip_source	csb.build.Console-class.html#_strip_source
csb.build.Console.verbosity	csb.build.Console-class.html#verbosity
csb.build.Console._doc	csb.build.Console-class.html#_doc
csb.build.Console._package	csb.build.Console-class.html#_package
csb.build.GitHandler	csb.build.GitHandler-class.html
csb.build.RevisionHandler._run	csb.build.RevisionHandler-class.html#_run
csb.build.GitHandler.read	csb.build.GitHandler-class.html#read
csb.build.RevisionHandler._delcache	csb.build.RevisionHandler-class.html#_delcache
csb.build.RevisionHandler.write	csb.build.RevisionHandler-class.html#write
csb.build.RevisionHandler.sc	csb.build.RevisionHandler-class.html#sc
csb.build.RevisionHandler.path	csb.build.RevisionHandler-class.html#path
csb.build.GitHandler.__init__	csb.build.GitHandler-class.html#__init__
csb.build.MercurialHandler	csb.build.MercurialHandler-class.html
csb.build.RevisionHandler._run	csb.build.RevisionHandler-class.html#_run
csb.build.MercurialHandler.read	csb.build.MercurialHandler-class.html#read
csb.build.RevisionHandler._delcache	csb.build.RevisionHandler-class.html#_delcache
csb.build.RevisionHandler.write	csb.build.RevisionHandler-class.html#write
csb.build.RevisionHandler.sc	csb.build.RevisionHandler-class.html#sc
csb.build.RevisionHandler.path	csb.build.RevisionHandler-class.html#path
csb.build.MercurialHandler.__init__	csb.build.MercurialHandler-class.html#__init__
csb.build.RevisionError	csb.build.RevisionError-class.html
csb.build.RevisionError.__init__	csb.build.RevisionError-class.html#__init__
csb.build.RevisionHandler	csb.build.RevisionHandler-class.html
csb.build.RevisionHandler._run	csb.build.RevisionHandler-class.html#_run
csb.build.RevisionHandler.read	csb.build.RevisionHandler-class.html#read
csb.build.RevisionHandler._delcache	csb.build.RevisionHandler-class.html#_delcache
csb.build.RevisionHandler.write	csb.build.RevisionHandler-class.html#write
csb.build.RevisionHandler.sc	csb.build.RevisionHandler-class.html#sc
csb.build.RevisionHandler.path	csb.build.RevisionHandler-class.html#path
csb.build.RevisionHandler.__init__	csb.build.RevisionHandler-class.html#__init__
csb.build.RevisionInfo	csb.build.RevisionInfo-class.html
csb.build.RevisionInfo.__init__	csb.build.RevisionInfo-class.html#__init__
csb.build.SubversionHandler	csb.build.SubversionHandler-class.html
csb.build.RevisionHandler._run	csb.build.RevisionHandler-class.html#_run
csb.build.SubversionHandler.read	csb.build.SubversionHandler-class.html#read
csb.build.RevisionHandler._delcache	csb.build.RevisionHandler-class.html#_delcache
csb.build.RevisionHandler.write	csb.build.RevisionHandler-class.html#write
csb.build.RevisionHandler.sc	csb.build.RevisionHandler-class.html#sc
csb.build.RevisionHandler.path	csb.build.RevisionHandler-class.html#path
csb.build.SubversionHandler.__init__	csb.build.SubversionHandler-class.html#__init__
csb.core.AbstractContainer	csb.core.AbstractContainer-class.html
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.core.AbstractContainer._children	csb.core.AbstractContainer-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.core.AbstractContainer.__abstractmethods__	csb.core.AbstractContainer-class.html#__abstractmethods__
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.core.AbstractContainer.__getitem__	csb.core.AbstractContainer-class.html#__getitem__
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.core.AbstractContainer._abc_negative_cache_version	csb.core.AbstractContainer-class.html#_abc_negative_cache_version
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.core.AbstractIndexer	csb.core.AbstractIndexer-class.html
csb.core.AbstractIndexer.__getitem__	csb.core.AbstractIndexer-class.html#__getitem__
csb.core.AbstractIndexer._getinternal	csb.core.AbstractIndexer-class.html#_getinternal
csb.core.AbstractNIContainer	csb.core.AbstractNIContainer-class.html
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.core.AbstractContainer._children	csb.core.AbstractContainer-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.core.AbstractContainer.__abstractmethods__	csb.core.AbstractContainer-class.html#__abstractmethods__
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.core.AbstractNIContainer.__getitem__	csb.core.AbstractNIContainer-class.html#__getitem__
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.core.AbstractContainer._abc_negative_cache_version	csb.core.AbstractContainer-class.html#_abc_negative_cache_version
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.core.BaseCollectionContainer	csb.core.BaseCollectionContainer-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.core.BaseCollectionContainer.__init__	csb.core.BaseCollectionContainer-class.html#__init__
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.core.BaseCollectionContainer.__fix	csb.core.BaseCollectionContainer-class.html#__fix
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.core.BaseCollectionContainer.__repr__	csb.core.BaseCollectionContainer-class.html#__repr__
csb.core.BaseDictionaryContainer	csb.core.BaseDictionaryContainer-class.html
csb.core.BaseDictionaryContainer._exception	csb.core.BaseDictionaryContainer-class.html#_exception
csb.core.BaseDictionaryContainer.__init__	csb.core.BaseDictionaryContainer-class.html#__init__
csb.core.BaseDictionaryContainer.__contains__	csb.core.BaseDictionaryContainer-class.html#__contains__
csb.core.BaseDictionaryContainer._getinternal	csb.core.BaseDictionaryContainer-class.html#_getinternal
csb.core.BaseDictionaryContainer._set_items	csb.core.BaseDictionaryContainer-class.html#_set_items
csb.core.BaseDictionaryContainer._update_items	csb.core.BaseDictionaryContainer-class.html#_update_items
csb.core.BaseDictionaryContainer.__len__	csb.core.BaseDictionaryContainer-class.html#__len__
csb.core.BaseDictionaryContainer.__getitem__	csb.core.BaseDictionaryContainer-class.html#__getitem__
csb.core.BaseDictionaryContainer.keys	csb.core.BaseDictionaryContainer-class.html#keys
csb.core.BaseDictionaryContainer.__iter__	csb.core.BaseDictionaryContainer-class.html#__iter__
csb.core.BaseDictionaryContainer.__bool__	csb.core.BaseDictionaryContainer-class.html#__bool__
csb.core.BaseDictionaryContainer._append_item	csb.core.BaseDictionaryContainer-class.html#_append_item
csb.core.BaseDictionaryContainer.__nonzero__	csb.core.BaseDictionaryContainer-class.html#__nonzero__
csb.core.BaseDictionaryContainer.length	csb.core.BaseDictionaryContainer-class.html#length
csb.core.BaseDictionaryContainer._remove_item	csb.core.BaseDictionaryContainer-class.html#_remove_item
csb.core.BaseDictionaryContainer.__repr__	csb.core.BaseDictionaryContainer-class.html#__repr__
csb.core.CollectionContainer	csb.core.CollectionContainer-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.core.CollectionContainer._update	csb.core.CollectionContainer-class.html#_update
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.core.CollectionContainer.__init__	csb.core.CollectionContainer-class.html#__init__
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.core.CollectionContainer.append	csb.core.CollectionContainer-class.html#append
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.core.BaseCollectionContainer.__repr__	csb.core.BaseCollectionContainer-class.html#__repr__
csb.core.CollectionIndexError	csb.core.CollectionIndexError-class.html
csb.core.Container	csb.core.Container-class.html
csb.core.AbstractContainer.__metaclass__	abc.ABCMeta-class.html
csb.core.Container._children	csb.core.Container-class.html#_children
csb.core.AbstractContainer._abc_negative_cache	csb.core.AbstractContainer-class.html#_abc_negative_cache
csb.core.Container.__init__	csb.core.Container-class.html#__init__
csb.core.AbstractContainer._abc_cache	csb.core.AbstractContainer-class.html#_abc_cache
csb.core.Container.__abstractmethods__	csb.core.Container-class.html#__abstractmethods__
csb.core.AbstractContainer.__len__	csb.core.AbstractContainer-class.html#__len__
csb.core.AbstractContainer.__getitem__	csb.core.AbstractContainer-class.html#__getitem__
csb.core.AbstractContainer.__iter__	csb.core.AbstractContainer-class.html#__iter__
csb.core.AbstractContainer.__bool__	csb.core.AbstractContainer-class.html#__bool__
csb.core.AbstractContainer.__nonzero__	csb.core.AbstractContainer-class.html#__nonzero__
csb.core.AbstractContainer._abc_negative_cache_version	csb.core.AbstractContainer-class.html#_abc_negative_cache_version
csb.core.AbstractContainer._abc_registry	csb.core.AbstractContainer-class.html#_abc_registry
csb.core.DictionaryContainer	csb.core.DictionaryContainer-class.html
csb.core.BaseDictionaryContainer._exception	csb.core.BaseDictionaryContainer-class.html#_exception
csb.core.DictionaryContainer._update	csb.core.DictionaryContainer-class.html#_update
csb.core.DictionaryContainer.append	csb.core.DictionaryContainer-class.html#append
csb.core.BaseDictionaryContainer.__contains__	csb.core.BaseDictionaryContainer-class.html#__contains__
csb.core.BaseDictionaryContainer._getinternal	csb.core.BaseDictionaryContainer-class.html#_getinternal
csb.core.DictionaryContainer._remove	csb.core.DictionaryContainer-class.html#_remove
csb.core.DictionaryContainer.__init__	csb.core.DictionaryContainer-class.html#__init__
csb.core.BaseDictionaryContainer._set_items	csb.core.BaseDictionaryContainer-class.html#_set_items
csb.core.BaseDictionaryContainer._update_items	csb.core.BaseDictionaryContainer-class.html#_update_items
csb.core.BaseDictionaryContainer.__len__	csb.core.BaseDictionaryContainer-class.html#__len__
csb.core.BaseDictionaryContainer.__getitem__	csb.core.BaseDictionaryContainer-class.html#__getitem__
csb.core.BaseDictionaryContainer.keys	csb.core.BaseDictionaryContainer-class.html#keys
csb.core.BaseDictionaryContainer.__iter__	csb.core.BaseDictionaryContainer-class.html#__iter__
csb.core.BaseDictionaryContainer.__bool__	csb.core.BaseDictionaryContainer-class.html#__bool__
csb.core.BaseDictionaryContainer._append_item	csb.core.BaseDictionaryContainer-class.html#_append_item
csb.core.BaseDictionaryContainer.__nonzero__	csb.core.BaseDictionaryContainer-class.html#__nonzero__
csb.core.BaseDictionaryContainer.length	csb.core.BaseDictionaryContainer-class.html#length
csb.core.BaseDictionaryContainer._remove_item	csb.core.BaseDictionaryContainer-class.html#_remove_item
csb.core.BaseDictionaryContainer.__repr__	csb.core.BaseDictionaryContainer-class.html#__repr__
csb.core.DictionaryContainer._set	csb.core.DictionaryContainer-class.html#_set
csb.core.DuplicateKeyError	csb.core.DuplicateKeyError-class.html
csb.core.Enum	csb.core.Enum-class.html
csb.core.Enum.parse	csb.core.Enum-class.html#parse
csb.core.Enum.names	csb.core.Enum-class.html#names
csb.core.Enum.ismember	csb.core.Enum-class.html#ismember
csb.core.Enum.create	csb.core.Enum-class.html#create
csb.core.Enum.parsename	csb.core.Enum-class.html#parsename
csb.core.Enum.tostring	csb.core.Enum-class.html#tostring
csb.core.Enum.members	csb.core.Enum-class.html#members
csb.core.Enum.values	csb.core.Enum-class.html#values
csb.core.EnumBase	csb.core.EnumBase-class.html
csb.core.EnumBase._names	csb.core.EnumBase-class.html#_names
csb.core.EnumBase._namesci	csb.core.EnumBase-class.html#_namesci
csb.core.EnumBase._name	csb.core.EnumBase-class.html#_name
csb.core.EnumBase._valuesci	csb.core.EnumBase-class.html#_valuesci
csb.core.EnumBase._values	csb.core.EnumBase-class.html#_values
csb.core.EnumItem	csb.core.EnumItem-class.html
csb.core.EnumItem.__int__	csb.core.EnumItem-class.html#__int__
csb.core.EnumItem.__str__	csb.core.EnumItem-class.html#__str__
csb.core.EnumItem.__reduce__	csb.core.EnumItem-class.html#__reduce__
csb.core.EnumItem._attach	csb.core.EnumItem-class.html#_attach
csb.core.EnumItem.__lt__	csb.core.EnumItem-class.html#__lt__
csb.core.EnumItem.__init__	csb.core.EnumItem-class.html#__init__
csb.core.EnumItem.__float__	csb.core.EnumItem-class.html#__float__
csb.core.EnumItem.__ne__	csb.core.EnumItem-class.html#__ne__
csb.core.EnumItem.__deepcopy__	csb.core.EnumItem-class.html#__deepcopy__
csb.core.EnumItem.enum	csb.core.EnumItem-class.html#enum
csb.core.EnumItem.__eq__	csb.core.EnumItem-class.html#__eq__
csb.core.EnumItem.name	csb.core.EnumItem-class.html#name
csb.core.EnumItem.value	csb.core.EnumItem-class.html#value
csb.core.EnumItem.__repr__	csb.core.EnumItem-class.html#__repr__
csb.core.EnumItem.__hash__	csb.core.EnumItem-class.html#__hash__
csb.core.EnumItem.__copy__	csb.core.EnumItem-class.html#__copy__
csb.core.EnumMemberError	csb.core.EnumMemberError-class.html
csb.core.EnumMeta	csb.core.EnumMeta-class.html
csb.core.EnumMeta.__str__	csb.core.EnumMeta-class.html#__str__
csb.core.EnumMeta.__setattr__	csb.core.EnumMeta-class.html#__setattr__
csb.core.EnumMeta.__new__	csb.core.EnumMeta-class.html#__new__
csb.core.EnumMeta.__contains__	csb.core.EnumMeta-class.html#__contains__
csb.core.EnumMeta.__iter__	csb.core.EnumMeta-class.html#__iter__
csb.core.EnumMeta.__repr__	csb.core.EnumMeta-class.html#__repr__
csb.core.EnumValueError	csb.core.EnumValueError-class.html
csb.core.InterruptibleThread	csb.core.InterruptibleThread-class.html
csb.core.InterruptibleThread.result	csb.core.InterruptibleThread-class.html#result
csb.core.InterruptibleThread.__init__	csb.core.InterruptibleThread-class.html#__init__
csb.core.InterruptibleThread.run	csb.core.InterruptibleThread-class.html#run
csb.core.InvalidKeyError	csb.core.InvalidKeyError-class.html
csb.core.ItemNotFoundError	csb.core.ItemNotFoundError-class.html
csb.core.OrderedDict	csb.core.OrderedDict-class.html
csb.core.Proxy	csb.core.Proxy-class.html
csb.core.Proxy.__getattr__	csb.core.Proxy-class.html#__getattr__
csb.core.Proxy.__init__	csb.core.Proxy-class.html#__init__
csb.core.REMatchProxy	csb.core.REMatchProxy-class.html
csb.core.REMatchProxy.end	csb.core.REMatchProxy-class.html#end
csb.core.REMatchProxy.start	csb.core.REMatchProxy-class.html#start
csb.core.REMatchProxy.groups	csb.core.REMatchProxy-class.html#groups
csb.core.REMatchProxy.__init__	csb.core.REMatchProxy-class.html#__init__
csb.core.ReadOnlyCollectionContainer	csb.core.ReadOnlyCollectionContainer-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.core.BaseCollectionContainer.__init__	csb.core.BaseCollectionContainer-class.html#__init__
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.core.BaseCollectionContainer.__repr__	csb.core.BaseCollectionContainer-class.html#__repr__
csb.core.ReadOnlyDictionaryContainer	csb.core.ReadOnlyDictionaryContainer-class.html
csb.core.BaseDictionaryContainer._exception	csb.core.BaseDictionaryContainer-class.html#_exception
csb.core.BaseDictionaryContainer.__init__	csb.core.BaseDictionaryContainer-class.html#__init__
csb.core.BaseDictionaryContainer.__contains__	csb.core.BaseDictionaryContainer-class.html#__contains__
csb.core.BaseDictionaryContainer._getinternal	csb.core.BaseDictionaryContainer-class.html#_getinternal
csb.core.BaseDictionaryContainer._set_items	csb.core.BaseDictionaryContainer-class.html#_set_items
csb.core.BaseDictionaryContainer._update_items	csb.core.BaseDictionaryContainer-class.html#_update_items
csb.core.BaseDictionaryContainer.__len__	csb.core.BaseDictionaryContainer-class.html#__len__
csb.core.BaseDictionaryContainer.__getitem__	csb.core.BaseDictionaryContainer-class.html#__getitem__
csb.core.BaseDictionaryContainer.keys	csb.core.BaseDictionaryContainer-class.html#keys
csb.core.BaseDictionaryContainer.__iter__	csb.core.BaseDictionaryContainer-class.html#__iter__
csb.core.BaseDictionaryContainer.__bool__	csb.core.BaseDictionaryContainer-class.html#__bool__
csb.core.BaseDictionaryContainer._append_item	csb.core.BaseDictionaryContainer-class.html#_append_item
csb.core.BaseDictionaryContainer.__nonzero__	csb.core.BaseDictionaryContainer-class.html#__nonzero__
csb.core.BaseDictionaryContainer.length	csb.core.BaseDictionaryContainer-class.html#length
csb.core.BaseDictionaryContainer._remove_item	csb.core.BaseDictionaryContainer-class.html#_remove_item
csb.core.BaseDictionaryContainer.__repr__	csb.core.BaseDictionaryContainer-class.html#__repr__
csb.core.Stack	csb.core.Stack-class.html
csb.core.Stack.peek	csb.core.Stack-class.html#peek
csb.core.Stack.empty	csb.core.Stack-class.html#empty
csb.core.Stack.push	csb.core.Stack-class.html#push
csb.core.enum	csb.core.enum-class.html
csb.core.EnumBase._names	csb.core.EnumBase-class.html#_names
csb.core.EnumBase._namesci	csb.core.EnumBase-class.html#_namesci
csb.core.enum._name	csb.core.enum-class.html#_name
csb.core.EnumBase._valuesci	csb.core.EnumBase-class.html#_valuesci
csb.core.EnumBase._values	csb.core.EnumBase-class.html#_values
csb.core.enum.__init__	csb.core.enum-class.html#__init__
csb.core.typedproperty	csb.core.typedproperty-class.html
csb.core.typedproperty.__init__	csb.core.typedproperty-class.html#__init__
csb.core.typedproperty.__set__	csb.core.typedproperty-class.html#__set__
csb.core.typedproperty.__call__	csb.core.typedproperty-class.html#__call__
csb.core.typedproperty.__get__	csb.core.typedproperty-class.html#__get__
csb.core.validatedproperty	csb.core.validatedproperty-class.html
csb.core.validatedproperty.__init__	csb.core.validatedproperty-class.html#__init__
csb.core.validatedproperty.__set__	csb.core.validatedproperty-class.html#__set__
csb.core.validatedproperty.__get__	csb.core.validatedproperty-class.html#__get__
csb.io.AutoFlushStream	csb.io.AutoFlushStream-class.html
csb.core.Proxy.__getattr__	csb.core.Proxy-class.html#__getattr__
csb.io.AutoFlushStream.write	csb.io.AutoFlushStream-class.html#write
csb.io.AutoFlushStream.__init__	csb.io.AutoFlushStream-class.html#__init__
csb.io.EntryReader	csb.io.EntryReader-class.html
csb.io.EntryReader.readall	csb.io.EntryReader-class.html#readall
csb.io.EntryReader.end_marker	csb.io.EntryReader-class.html#end_marker
csb.io.EntryReader.__del__	csb.io.EntryReader-class.html#__del__
csb.io.EntryReader.start_marker	csb.io.EntryReader-class.html#start_marker
csb.io.EntryReader.entries	csb.io.EntryReader-class.html#entries
csb.io.EntryReader.__init__	csb.io.EntryReader-class.html#__init__
csb.io.EntryWriter	csb.io.EntryWriter-class.html
csb.io.EntryWriter.stream	csb.io.EntryWriter-class.html#stream
csb.io.EntryWriter.writeline	csb.io.EntryWriter-class.html#writeline
csb.io.EntryWriter.close	csb.io.EntryWriter-class.html#close
csb.io.EntryWriter.__init__	csb.io.EntryWriter-class.html#__init__
csb.io.EntryWriter.__enter__	csb.io.EntryWriter-class.html#__enter__
csb.io.EntryWriter.write	csb.io.EntryWriter-class.html#write
csb.io.EntryWriter.autoclose	csb.io.EntryWriter-class.html#autoclose
csb.io.EntryWriter.__exit__	csb.io.EntryWriter-class.html#__exit__
csb.io.EntryWriter.__del__	csb.io.EntryWriter-class.html#__del__
csb.io.EntryWriter.newline	csb.io.EntryWriter-class.html#newline
csb.io.EntryWriter.writeall	csb.io.EntryWriter-class.html#writeall
csb.io.InvalidCommandError	csb.io.InvalidCommandError-class.html
csb.io.InvalidCommandError.__str__	csb.io.InvalidCommandError-class.html#__str__
csb.io.InvalidCommandError.__init__	csb.io.InvalidCommandError-class.html#__init__
csb.io.MemoryStream	csb.io.MemoryStream-class.html
csb.io.MemoryStream.__enter__	csb.io.MemoryStream-class.html#__enter__
csb.io.MemoryStream.__exit__	csb.io.MemoryStream-class.html#__exit__
csb.io.ProcessError	csb.io.ProcessError-class.html
csb.io.ProcessError.__str__	csb.io.ProcessError-class.html#__str__
csb.io.ProcessError.__init__	csb.io.ProcessError-class.html#__init__
csb.io.Shell	csb.io.Shell-class.html
csb.io.Shell.run	csb.io.Shell-class.html#run
csb.io.Shell.runstrict	csb.io.Shell-class.html#runstrict
csb.io.Shell.POLL	csb.io.Shell-class.html#POLL
csb.io.ShellInfo	csb.io.ShellInfo-class.html
csb.io.ShellInfo.__init__	csb.io.ShellInfo-class.html#__init__
csb.io.TempFile	csb.io.TempFile-class.html
csb.io.TempFile.__exit__	csb.io.TempFile-class.html#__exit__
csb.io.TempFile.name	csb.io.TempFile-class.html#name
csb.io.TempFile.__del__	csb.io.TempFile-class.html#__del__
csb.io.TempFile.__enter__	csb.io.TempFile-class.html#__enter__
csb.core.Proxy.__getattr__	csb.core.Proxy-class.html#__getattr__
csb.io.TempFile.content	csb.io.TempFile-class.html#content
csb.io.TempFile.close	csb.io.TempFile-class.html#close
csb.io.TempFile.__init__	csb.io.TempFile-class.html#__init__
csb.io.TempFolder	csb.io.TempFolder-class.html
csb.io.TempFolder.__exit__	csb.io.TempFolder-class.html#__exit__
csb.io.TempFolder.name	csb.io.TempFolder-class.html#name
csb.io.TempFolder.__del__	csb.io.TempFolder-class.html#__del__
csb.io.TempFolder.__enter__	csb.io.TempFolder-class.html#__enter__
csb.io.TempFolder.close	csb.io.TempFolder-class.html#close
csb.io.TempFolder.__init__	csb.io.TempFolder-class.html#__init__
csb.io.TimeoutError	csb.io.TimeoutError-class.html
csb.io.TimeoutError.__str__	csb.io.TimeoutError-class.html#__str__
csb.io.TimeoutError.__init__	csb.io.TimeoutError-class.html#__init__
csb.io.plots.Backend	csb.io.plots.Backend-class.html
csb.io.plots.Backend.__metaclass__	abc.ABCMeta-class.html
csb.io.plots.Backend.show	csb.io.plots.Backend-class.html#show
csb.io.plots.Backend._abc_negative_cache	csb.io.plots.Backend-class.html#_abc_negative_cache
csb.io.plots.Backend._add	csb.io.plots.Backend-class.html#_add
csb.io.plots.Backend.query	csb.io.plots.Backend-class.html#query
csb.io.plots.Backend.__init__	csb.io.plots.Backend-class.html#__init__
csb.io.plots.Backend._abc_cache	csb.io.plots.Backend-class.html#_abc_cache
csb.io.plots.Backend.hide	csb.io.plots.Backend-class.html#hide
csb.io.plots.Backend.start	csb.io.plots.Backend-class.html#start
csb.io.plots.Backend.__abstractmethods__	csb.io.plots.Backend-class.html#__abstractmethods__
csb.io.plots.Backend.add	csb.io.plots.Backend-class.html#add
csb.io.plots.Backend.__del__	csb.io.plots.Backend-class.html#__del__
csb.io.plots.Backend._hide	csb.io.plots.Backend-class.html#_hide
csb.io.plots.Backend._instances	csb.io.plots.Backend-class.html#_instances
csb.io.plots.Backend.run	csb.io.plots.Backend-class.html#run
csb.io.plots.Backend.destroy	csb.io.plots.Backend-class.html#destroy
csb.io.plots.Backend._resize	csb.io.plots.Backend-class.html#_resize
csb.io.plots.Backend.invoke	csb.io.plots.Backend-class.html#invoke
csb.io.plots.Backend.get	csb.io.plots.Backend-class.html#get
csb.io.plots.Backend.started	csb.io.plots.Backend-class.html#started
csb.io.plots.Backend.stop	csb.io.plots.Backend-class.html#stop
csb.io.plots.Backend.running	csb.io.plots.Backend-class.html#running
csb.io.plots.Backend.resize	csb.io.plots.Backend-class.html#resize
csb.io.plots.Backend._initapp	csb.io.plots.Backend-class.html#_initapp
csb.io.plots.Backend._show	csb.io.plots.Backend-class.html#_show
csb.io.plots.Backend.client_disposed	csb.io.plots.Backend-class.html#client_disposed
csb.io.plots.Backend._invoke	csb.io.plots.Backend-class.html#_invoke
csb.io.plots.Backend._mainloop	csb.io.plots.Backend-class.html#_mainloop
csb.io.plots.Backend._abc_negative_cache_version	csb.io.plots.Backend-class.html#_abc_negative_cache_version
csb.io.plots.Backend._destroy	csb.io.plots.Backend-class.html#_destroy
csb.io.plots.Backend._exit	csb.io.plots.Backend-class.html#_exit
csb.io.plots.Backend._abc_registry	csb.io.plots.Backend-class.html#_abc_registry
csb.io.plots.Backends	csb.io.plots.Backends-class.html
csb.io.plots.Backends.WX_WIDGETS	csb.io.plots.WxBackendImpl-class.html
csb.io.plots.Chart	csb.io.plots.Chart-class.html
csb.io.plots.Chart.show	csb.io.plots.Chart-class.html#show
csb.io.plots.Chart.number	csb.io.plots.Chart-class.html#number
csb.io.plots.Chart.height	csb.io.plots.Chart-class.html#height
csb.io.plots.Chart.__init__	csb.io.plots.Chart-class.html#__init__
csb.io.plots.Chart.plot	csb.io.plots.Chart-class.html#plot
csb.io.plots.Chart.rows	csb.io.plots.Chart-class.html#rows
csb.io.plots.Chart.hide	csb.io.plots.Chart-class.html#hide
csb.io.plots.Chart.title	csb.io.plots.Chart-class.html#title
csb.io.plots.Chart.__enter__	csb.io.plots.Chart-class.html#__enter__
csb.io.plots.Chart.dispose	csb.io.plots.Chart-class.html#dispose
csb.io.plots.Chart.width	csb.io.plots.Chart-class.html#width
csb.io.plots.Chart.save	csb.io.plots.Chart-class.html#save
csb.io.plots.Chart.columns	csb.io.plots.Chart-class.html#columns
csb.io.plots.Chart.__exit__	csb.io.plots.Chart-class.html#__exit__
csb.io.plots.Chart.__getitem__	csb.io.plots.Chart-class.html#__getitem__
csb.io.plots.Chart.AUTONUMBER	csb.io.plots.Chart-class.html#AUTONUMBER
csb.io.plots.Chart.plots	csb.io.plots.Chart-class.html#plots
csb.io.plots.Chart._backend	csb.io.plots.Chart-class.html#_backend
csb.io.plots.Chart._backend_started	csb.io.plots.Chart-class.html#_backend_started
csb.io.plots.Chart.formats	csb.io.plots.Chart-class.html#formats
csb.io.plots.Chart._serial	csb.io.plots.Chart-class.html#_serial
csb.io.plots.Chart.dpi	csb.io.plots.Chart-class.html#dpi
csb.io.plots.PlotsCollection	csb.io.plots.PlotsCollection-class.html
csb.io.plots.PlotsCollection.__getitem__	csb.io.plots.PlotsCollection-class.html#__getitem__
csb.io.plots.PlotsCollection._active_plots	csb.io.plots.PlotsCollection-class.html#_active_plots
csb.io.plots.PlotsCollection._add	csb.io.plots.PlotsCollection-class.html#_add
csb.io.plots.PlotsCollection.__iter__	csb.io.plots.PlotsCollection-class.html#__iter__
csb.io.plots.PlotsCollection.__init__	csb.io.plots.PlotsCollection-class.html#__init__
csb.io.plots.PlotsCollection.__len__	csb.io.plots.PlotsCollection-class.html#__len__
csb.io.plots.WxBackendImpl	csb.io.plots.WxBackendImpl-class.html
csb.io.plots.Backend.__metaclass__	abc.ABCMeta-class.html
csb.io.plots.Backend.show	csb.io.plots.Backend-class.html#show
csb.io.plots.Backend._abc_negative_cache	csb.io.plots.Backend-class.html#_abc_negative_cache
csb.io.plots.WxBackendImpl._wxapp	csb.io.plots.WxBackendImpl-class.html#_wxapp
csb.io.plots.WxBackendImpl._add	csb.io.plots.WxBackendImpl-class.html#_add
csb.io.plots.Backend.query	csb.io.plots.Backend-class.html#query
csb.io.plots.WxBackendImpl.__init__	csb.io.plots.WxBackendImpl-class.html#__init__
csb.io.plots.Backend._abc_cache	csb.io.plots.Backend-class.html#_abc_cache
csb.io.plots.Backend.hide	csb.io.plots.Backend-class.html#hide
csb.io.plots.WxBackendImpl.__abstractmethods__	csb.io.plots.WxBackendImpl-class.html#__abstractmethods__
csb.io.plots.WxBackendImpl._hide	csb.io.plots.WxBackendImpl-class.html#_hide
csb.io.plots.Backend.start	csb.io.plots.Backend-class.html#start
csb.io.plots.Backend.add	csb.io.plots.Backend-class.html#add
csb.io.plots.Backend._instances	csb.io.plots.Backend-class.html#_instances
csb.io.plots.Backend.run	csb.io.plots.Backend-class.html#run
csb.io.plots.WxBackendImpl._app	csb.io.plots.WxBackendImpl-class.html#_app
csb.io.plots.Backend.destroy	csb.io.plots.Backend-class.html#destroy
csb.io.plots.Backend.started	csb.io.plots.Backend-class.html#started
csb.io.plots.WxBackendImpl._resize	csb.io.plots.WxBackendImpl-class.html#_resize
csb.io.plots.Backend.invoke	csb.io.plots.Backend-class.html#invoke
csb.io.plots.Backend.get	csb.io.plots.Backend-class.html#get
csb.io.plots.Backend.__del__	csb.io.plots.Backend-class.html#__del__
csb.io.plots.Backend.stop	csb.io.plots.Backend-class.html#stop
csb.io.plots.Backend.running	csb.io.plots.Backend-class.html#running
csb.io.plots.Backend.resize	csb.io.plots.Backend-class.html#resize
csb.io.plots.WxBackendImpl._initapp	csb.io.plots.WxBackendImpl-class.html#_initapp
csb.io.plots.WxBackendImpl._show	csb.io.plots.WxBackendImpl-class.html#_show
csb.io.plots.Backend.client_disposed	csb.io.plots.Backend-class.html#client_disposed
csb.io.plots.WxBackendImpl._invoke	csb.io.plots.WxBackendImpl-class.html#_invoke
csb.io.plots.WxBackendImpl._mainloop	csb.io.plots.WxBackendImpl-class.html#_mainloop
csb.io.plots.Backend._abc_negative_cache_version	csb.io.plots.Backend-class.html#_abc_negative_cache_version
csb.io.plots.WxBackendImpl._destroy	csb.io.plots.WxBackendImpl-class.html#_destroy
csb.io.plots.WxBackendImpl._exit	csb.io.plots.WxBackendImpl-class.html#_exit
csb.io.plots.Backend._abc_registry	csb.io.plots.Backend-class.html#_abc_registry
csb.io.tsv.Between	csb.io.tsv.Between-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Between.__init__	csb.io.tsv.Between-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.Between.__abstractmethods__	csb.io.tsv.Between-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.Between.sql	csb.io.tsv.Between-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.ColumnInfo	csb.io.tsv.ColumnInfo-class.html
csb.io.tsv.ColumnInfo.name	csb.io.tsv.ColumnInfo-class.html#name
csb.io.tsv.ColumnInfo.__str__	csb.io.tsv.ColumnInfo-class.html#__str__
csb.io.tsv.ColumnInfo.copy	csb.io.tsv.ColumnInfo-class.html#copy
csb.io.tsv.ColumnInfo.type	csb.io.tsv.ColumnInfo-class.html#type
csb.io.tsv.ColumnInfo.__init__	csb.io.tsv.ColumnInfo-class.html#__init__
csb.io.tsv.DataRow	csb.io.tsv.DataRow-class.html
csb.io.tsv.DataRow.__getitem__	csb.io.tsv.DataRow-class.html#__getitem__
csb.io.tsv.DataRow.dump	csb.io.tsv.DataRow-class.html#dump
csb.io.tsv.DataRow.__str__	csb.io.tsv.DataRow-class.html#__str__
csb.io.tsv.DataRow.columns	csb.io.tsv.DataRow-class.html#columns
csb.io.tsv.DataRow.number	csb.io.tsv.DataRow-class.html#number
csb.io.tsv.DataRow.__iter__	csb.io.tsv.DataRow-class.html#__iter__
csb.io.tsv.DataRow.__init__	csb.io.tsv.DataRow-class.html#__init__
csb.io.tsv.DataRow.__len__	csb.io.tsv.DataRow-class.html#__len__
csb.io.tsv.DataRow.__repr__	csb.io.tsv.DataRow-class.html#__repr__
csb.io.tsv.Equals	csb.io.tsv.Equals-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.Equals.__abstractmethods__	csb.io.tsv.Equals-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.Equals.sql	csb.io.tsv.Equals-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.Expression	csb.io.tsv.Expression-class.html
csb.io.tsv.Expression.all	csb.io.tsv.Expression-class.html#all
csb.io.tsv.Expression.scalar	csb.io.tsv.Expression-class.html#scalar
csb.io.tsv.Expression.array	csb.io.tsv.Expression-class.html#array
csb.io.tsv.Expression.select	csb.io.tsv.Expression-class.html#select
csb.io.tsv.Expression.params	csb.io.tsv.Expression-class.html#params
csb.io.tsv.Expression.__init__	csb.io.tsv.Expression-class.html#__init__
csb.io.tsv.Expression.predicate	csb.io.tsv.Expression-class.html#predicate
csb.io.tsv.Expression.data	csb.io.tsv.Expression-class.html#data
csb.io.tsv.Expression.where	csb.io.tsv.Expression-class.html#where
csb.io.tsv.Greater	csb.io.tsv.Greater-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.Greater.__abstractmethods__	csb.io.tsv.Greater-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.Greater.sql	csb.io.tsv.Greater-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.GreaterOrEquals	csb.io.tsv.GreaterOrEquals-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.GreaterOrEquals.__abstractmethods__	csb.io.tsv.GreaterOrEquals-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.GreaterOrEquals.sql	csb.io.tsv.GreaterOrEquals-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.In	csb.io.tsv.In-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.In.__abstractmethods__	csb.io.tsv.In-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.In.sql	csb.io.tsv.In-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.InvalidColumnError	csb.io.tsv.InvalidColumnError-class.html
csb.io.tsv.Lower	csb.io.tsv.Lower-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.Lower.__abstractmethods__	csb.io.tsv.Lower-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.Lower.sql	csb.io.tsv.Lower-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.LowerOrEquals	csb.io.tsv.LowerOrEquals-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.LowerOrEquals.__abstractmethods__	csb.io.tsv.LowerOrEquals-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.LowerOrEquals.sql	csb.io.tsv.LowerOrEquals-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.NotEquals	csb.io.tsv.NotEquals-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.NotEquals.__abstractmethods__	csb.io.tsv.NotEquals-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.NotEquals.sql	csb.io.tsv.NotEquals-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.NotIn	csb.io.tsv.NotIn-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.NotIn.__abstractmethods__	csb.io.tsv.NotIn-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.NotIn.sql	csb.io.tsv.NotIn-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.Operator	csb.io.tsv.Operator-class.html
csb.io.tsv.Operator.update	csb.io.tsv.Operator-class.html#update
csb.io.tsv.Operator.__init__	csb.io.tsv.Operator-class.html#__init__
csb.io.tsv.Step.table	csb.io.tsv.Step-class.html#table
csb.io.tsv.Step.expression	csb.io.tsv.Step-class.html#expression
csb.io.tsv.Operator.select	csb.io.tsv.Operator-class.html#select
csb.io.tsv.Predicate	csb.io.tsv.Predicate-class.html
csb.io.tsv.Predicate.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.Predicate._validate	csb.io.tsv.Predicate-class.html#_validate
csb.io.tsv.Predicate._abc_negative_cache	csb.io.tsv.Predicate-class.html#_abc_negative_cache
csb.io.tsv.Predicate.__str__	csb.io.tsv.Predicate-class.html#__str__
csb.io.tsv.Predicate.__init__	csb.io.tsv.Predicate-class.html#__init__
csb.io.tsv.Predicate._abc_cache	csb.io.tsv.Predicate-class.html#_abc_cache
csb.io.tsv.Predicate.__abstractmethods__	csb.io.tsv.Predicate-class.html#__abstractmethods__
csb.io.tsv.Predicate.params	csb.io.tsv.Predicate-class.html#params
csb.io.tsv.Predicate.PH	csb.io.tsv.Predicate-class.html#PH
csb.io.tsv.Predicate.sql	csb.io.tsv.Predicate-class.html#sql
csb.io.tsv.Predicate._abc_negative_cache_version	csb.io.tsv.Predicate-class.html#_abc_negative_cache_version
csb.io.tsv.Predicate._abc_registry	csb.io.tsv.Predicate-class.html#_abc_registry
csb.io.tsv.RepositoryImp	csb.io.tsv.RepositoryImp-class.html
csb.io.tsv.RepositoryImp.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.RepositoryImp._abc_negative_cache	csb.io.tsv.RepositoryImp-class.html#_abc_negative_cache
csb.io.tsv.RepositoryImp.table	csb.io.tsv.RepositoryImp-class.html#table
csb.io.tsv.RepositoryImp.close	csb.io.tsv.RepositoryImp-class.html#close
csb.io.tsv.RepositoryImp.__init__	csb.io.tsv.RepositoryImp-class.html#__init__
csb.io.tsv.RepositoryImp._abc_cache	csb.io.tsv.RepositoryImp-class.html#_abc_cache
csb.io.tsv.RepositoryImp.create	csb.io.tsv.RepositoryImp-class.html#create
csb.io.tsv.RepositoryImp.__abstractmethods__	csb.io.tsv.RepositoryImp-class.html#__abstractmethods__
csb.io.tsv.RepositoryImp.query	csb.io.tsv.RepositoryImp-class.html#query
csb.io.tsv.RepositoryImp.pk	csb.io.tsv.RepositoryImp-class.html#pk
csb.io.tsv.RepositoryImp.update	csb.io.tsv.RepositoryImp-class.html#update
csb.io.tsv.RepositoryImp.count	csb.io.tsv.RepositoryImp-class.html#count
csb.io.tsv.RepositoryImp.insert	csb.io.tsv.RepositoryImp-class.html#insert
csb.io.tsv.RepositoryImp.execute	csb.io.tsv.RepositoryImp-class.html#execute
csb.io.tsv.RepositoryImp._abc_negative_cache_version	csb.io.tsv.RepositoryImp-class.html#_abc_negative_cache_version
csb.io.tsv.RepositoryImp._abc_registry	csb.io.tsv.RepositoryImp-class.html#_abc_registry
csb.io.tsv.SQLiteRepository	csb.io.tsv.SQLiteRepository-class.html
csb.io.tsv.RepositoryImp.__metaclass__	abc.ABCMeta-class.html
csb.io.tsv.SQLiteRepository._gettype	csb.io.tsv.SQLiteRepository-class.html#_gettype
csb.io.tsv.RepositoryImp._abc_negative_cache	csb.io.tsv.RepositoryImp-class.html#_abc_negative_cache
csb.io.tsv.SQLiteRepository.close	csb.io.tsv.SQLiteRepository-class.html#close
csb.io.tsv.SQLiteRepository.query	csb.io.tsv.SQLiteRepository-class.html#query
csb.io.tsv.SQLiteRepository._cursor	csb.io.tsv.SQLiteRepository-class.html#_cursor
csb.io.tsv.SQLiteRepository.__init__	csb.io.tsv.SQLiteRepository-class.html#__init__
csb.io.tsv.RepositoryImp._abc_cache	csb.io.tsv.RepositoryImp-class.html#_abc_cache
csb.io.tsv.SQLiteRepository.ChunkedReader	csb.io.tsv.SQLiteRepository.ChunkedReader-class.html
csb.io.tsv.SQLiteRepository.create	csb.io.tsv.SQLiteRepository-class.html#create
csb.io.tsv.SQLiteRepository.__abstractmethods__	csb.io.tsv.SQLiteRepository-class.html#__abstractmethods__
csb.io.tsv.SQLiteRepository.pk	csb.io.tsv.SQLiteRepository-class.html#pk
csb.io.tsv.SQLiteRepository.TYPES	csb.io.tsv.SQLiteRepository-class.html#TYPES
csb.io.tsv.SQLiteRepository.update	csb.io.tsv.SQLiteRepository-class.html#update
csb.io.tsv.SQLiteRepository.PK	csb.io.tsv.SQLiteRepository-class.html#PK
csb.io.tsv.RepositoryImp.table	csb.io.tsv.RepositoryImp-class.html#table
csb.io.tsv.SQLiteRepository.count	csb.io.tsv.SQLiteRepository-class.html#count
csb.io.tsv.SQLiteRepository.insert	csb.io.tsv.SQLiteRepository-class.html#insert
csb.io.tsv.SQLiteRepository.execute	csb.io.tsv.SQLiteRepository-class.html#execute
csb.io.tsv.RepositoryImp._abc_negative_cache_version	csb.io.tsv.RepositoryImp-class.html#_abc_negative_cache_version
csb.io.tsv.RepositoryImp._abc_registry	csb.io.tsv.RepositoryImp-class.html#_abc_registry
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csb.statistics.samplers.AbstractState.__abstractmethods__	csb.statistics.samplers.AbstractState-class.html#__abstractmethods__
csb.statistics.samplers.AbstractState.momentum	csb.statistics.samplers.AbstractState-class.html#momentum
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csb.statistics.samplers.AbstractState._abc_registry	csb.statistics.samplers.AbstractState-class.html#_abc_registry
csb.statistics.samplers.DimensionError	csb.statistics.samplers.DimensionError-class.html
csb.statistics.samplers.EnsembleState	csb.statistics.samplers.EnsembleState-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.statistics.samplers.AbstractState.__metaclass__	abc.ABCMeta-class.html
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csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.statistics.samplers.EnsembleState.__init__	csb.statistics.samplers.EnsembleState-class.html#__init__
csb.statistics.samplers.AbstractState._abc_cache	csb.statistics.samplers.AbstractState-class.html#_abc_cache
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csb.statistics.samplers.EnsembleState.__abstractmethods__	csb.statistics.samplers.EnsembleState-class.html#__abstractmethods__
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.statistics.samplers.EnsembleState.momentum	csb.statistics.samplers.EnsembleState-class.html#momentum
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
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csb.core.BaseCollectionContainer.__repr__	csb.core.BaseCollectionContainer-class.html#__repr__
csb.statistics.samplers.EnsembleState.position	csb.statistics.samplers.EnsembleState-class.html#position
csb.statistics.samplers.AbstractState._abc_registry	csb.statistics.samplers.AbstractState-class.html#_abc_registry
csb.statistics.samplers.State	csb.statistics.samplers.State-class.html
csb.statistics.samplers.AbstractState.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.AbstractState._abc_negative_cache	csb.statistics.samplers.AbstractState-class.html#_abc_negative_cache
csb.statistics.samplers.State.__init__	csb.statistics.samplers.State-class.html#__init__
csb.statistics.samplers.AbstractState._abc_cache	csb.statistics.samplers.AbstractState-class.html#_abc_cache
csb.statistics.samplers.State.__abstractmethods__	csb.statistics.samplers.State-class.html#__abstractmethods__
csb.statistics.samplers.State.momentum	csb.statistics.samplers.State-class.html#momentum
csb.statistics.samplers.State.check_flat_array	csb.statistics.samplers.State-class.html#check_flat_array
csb.statistics.samplers.State.clone	csb.statistics.samplers.State-class.html#clone
csb.statistics.samplers.State.__eq__	csb.statistics.samplers.State-class.html#__eq__
csb.statistics.samplers.State.check_equal_length	csb.statistics.samplers.State-class.html#check_equal_length
csb.statistics.samplers.AbstractState._abc_negative_cache_version	csb.statistics.samplers.AbstractState-class.html#_abc_negative_cache_version
csb.statistics.samplers.State.position	csb.statistics.samplers.State-class.html#position
csb.statistics.samplers.AbstractState._abc_registry	csb.statistics.samplers.AbstractState-class.html#_abc_registry
csb.statistics.samplers.mc.AbstractMC	csb.statistics.samplers.mc.AbstractMC-class.html
csb.statistics.samplers.AbstractSampler.__metaclass__	abc.ABCMeta-class.html
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csb.statistics.samplers.mc.AbstractMC.energy	csb.statistics.samplers.mc.AbstractMC-class.html#energy
csb.statistics.samplers.mc.AbstractMC.sample	csb.statistics.samplers.mc.AbstractMC-class.html#sample
csb.statistics.samplers.mc.AbstractMC.__init__	csb.statistics.samplers.mc.AbstractMC-class.html#__init__
csb.statistics.samplers.AbstractSampler._abc_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_cache
csb.statistics.samplers.mc.AbstractMC.__abstractmethods__	csb.statistics.samplers.mc.AbstractMC-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractMC.state	csb.statistics.samplers.mc.AbstractMC-class.html#state
csb.statistics.samplers.mc.AbstractMC._checkstate	csb.statistics.samplers.mc.AbstractMC-class.html#_checkstate
csb.statistics.samplers.AbstractSampler._abc_negative_cache_version	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache_version
csb.statistics.samplers.AbstractSampler._abc_registry	csb.statistics.samplers.AbstractSampler-class.html#_abc_registry
csb.statistics.samplers.mc.AbstractPropagationResult	csb.statistics.samplers.mc.AbstractPropagationResult-class.html
csb.statistics.samplers.mc.AbstractPropagationResult.initial	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#initial
csb.statistics.samplers.mc.AbstractPropagationResult.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.mc.AbstractPropagationResult._abc_negative_cache	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_negative_cache
csb.statistics.samplers.mc.AbstractPropagationResult._abc_cache	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_cache
csb.statistics.samplers.mc.AbstractPropagationResult.__abstractmethods__	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractPropagationResult.final	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#final
csb.statistics.samplers.mc.AbstractPropagationResult.heat	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#heat
csb.statistics.samplers.mc.AbstractPropagationResult._abc_negative_cache_version	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_negative_cache_version
csb.statistics.samplers.mc.AbstractPropagationResult._abc_registry	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_registry
csb.statistics.samplers.mc.MCCollection	csb.statistics.samplers.mc.MCCollection-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.statistics.samplers.mc.MCCollection.__init__	csb.statistics.samplers.mc.MCCollection-class.html#__init__
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.core.BaseCollectionContainer.__repr__	csb.core.BaseCollectionContainer-class.html#__repr__
csb.statistics.samplers.mc.PropagationResult	csb.statistics.samplers.mc.PropagationResult-class.html
csb.statistics.samplers.mc.PropagationResult.initial	csb.statistics.samplers.mc.PropagationResult-class.html#initial
csb.statistics.samplers.mc.AbstractPropagationResult.__metaclass__	abc.ABCMeta-class.html
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csb.statistics.samplers.mc.PropagationResult.__init__	csb.statistics.samplers.mc.PropagationResult-class.html#__init__
csb.statistics.samplers.mc.AbstractPropagationResult._abc_cache	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_cache
csb.statistics.samplers.mc.PropagationResult.__abstractmethods__	csb.statistics.samplers.mc.PropagationResult-class.html#__abstractmethods__
csb.statistics.samplers.mc.PropagationResult.final	csb.statistics.samplers.mc.PropagationResult-class.html#final
csb.statistics.samplers.mc.PropagationResult.heat	csb.statistics.samplers.mc.PropagationResult-class.html#heat
csb.statistics.samplers.mc.PropagationResult.__iter__	csb.statistics.samplers.mc.PropagationResult-class.html#__iter__
csb.statistics.samplers.mc.AbstractPropagationResult._abc_negative_cache_version	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_negative_cache_version
csb.statistics.samplers.mc.AbstractPropagationResult._abc_registry	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_registry
csb.statistics.samplers.mc.ShortTrajectoryBuilder	csb.statistics.samplers.mc.ShortTrajectoryBuilder-class.html
csb.statistics.samplers.mc.TrajectoryBuilder.add_final_state	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#add_final_state
csb.statistics.samplers.mc.ShortTrajectoryBuilder.product	csb.statistics.samplers.mc.ShortTrajectoryBuilder-class.html#product
csb.statistics.samplers.mc.TrajectoryBuilder.create	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#create
csb.statistics.samplers.mc.ShortTrajectoryBuilder.add_intermediate_state	csb.statistics.samplers.mc.ShortTrajectoryBuilder-class.html#add_intermediate_state
csb.statistics.samplers.mc.TrajectoryBuilder.__init__	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#__init__
csb.statistics.samplers.mc.TrajectoryBuilder.add_initial_state	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#add_initial_state
csb.statistics.samplers.mc.Trajectory	csb.statistics.samplers.mc.Trajectory-class.html
csb.core.BaseCollectionContainer._exception	csb.core.BaseCollectionContainer-class.html#_exception
csb.statistics.samplers.mc.Trajectory.__abstractmethods__	csb.statistics.samplers.mc.Trajectory-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractPropagationResult.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.mc.AbstractPropagationResult._abc_negative_cache	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_negative_cache
csb.core.BaseCollectionContainer.last_index	csb.core.BaseCollectionContainer-class.html#last_index
csb.core.CollectionContainer._update	csb.core.CollectionContainer-class.html#_update
csb.core.CollectionContainer.append	csb.core.CollectionContainer-class.html#append
csb.statistics.samplers.mc.AbstractPropagationResult._abc_cache	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_cache
csb.core.BaseCollectionContainer.__contains__	csb.core.BaseCollectionContainer-class.html#__contains__
csb.statistics.samplers.mc.Trajectory.initial	csb.statistics.samplers.mc.Trajectory-class.html#initial
csb.core.BaseCollectionContainer._getinternal	csb.core.BaseCollectionContainer-class.html#_getinternal
csb.statistics.samplers.mc.Trajectory.__init__	csb.statistics.samplers.mc.Trajectory-class.html#__init__
csb.core.BaseCollectionContainer._update_items	csb.core.BaseCollectionContainer-class.html#_update_items
csb.statistics.samplers.mc.Trajectory.final	csb.statistics.samplers.mc.Trajectory-class.html#final
csb.core.BaseCollectionContainer.__len__	csb.core.BaseCollectionContainer-class.html#__len__
csb.core.BaseCollectionContainer.__getitem__	csb.core.BaseCollectionContainer-class.html#__getitem__
csb.core.BaseCollectionContainer.__iter__	csb.core.BaseCollectionContainer-class.html#__iter__
csb.core.BaseCollectionContainer.__bool__	csb.core.BaseCollectionContainer-class.html#__bool__
csb.core.BaseCollectionContainer.start_index	csb.core.BaseCollectionContainer-class.html#start_index
csb.core.BaseCollectionContainer._append_item	csb.core.BaseCollectionContainer-class.html#_append_item
csb.core.BaseCollectionContainer.__nonzero__	csb.core.BaseCollectionContainer-class.html#__nonzero__
csb.core.BaseCollectionContainer._sort	csb.core.BaseCollectionContainer-class.html#_sort
csb.statistics.samplers.mc.Trajectory.work	csb.statistics.samplers.mc.Trajectory-class.html#work
csb.statistics.samplers.mc.Trajectory.heat	csb.statistics.samplers.mc.Trajectory-class.html#heat
csb.core.BaseCollectionContainer.length	csb.core.BaseCollectionContainer-class.html#length
csb.statistics.samplers.mc.AbstractPropagationResult._abc_negative_cache_version	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_negative_cache_version
csb.core.BaseCollectionContainer.__repr__	csb.core.BaseCollectionContainer-class.html#__repr__
csb.statistics.samplers.mc.AbstractPropagationResult._abc_registry	csb.statistics.samplers.mc.AbstractPropagationResult-class.html#_abc_registry
csb.statistics.samplers.mc.TrajectoryBuilder	csb.statistics.samplers.mc.TrajectoryBuilder-class.html
csb.statistics.samplers.mc.TrajectoryBuilder.add_final_state	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#add_final_state
csb.statistics.samplers.mc.TrajectoryBuilder.product	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#product
csb.statistics.samplers.mc.TrajectoryBuilder.create	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#create
csb.statistics.samplers.mc.TrajectoryBuilder.add_intermediate_state	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#add_intermediate_state
csb.statistics.samplers.mc.TrajectoryBuilder.__init__	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#__init__
csb.statistics.samplers.mc.TrajectoryBuilder.add_initial_state	csb.statistics.samplers.mc.TrajectoryBuilder-class.html#add_initial_state
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html
csb.statistics.samplers.AbstractSampler.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.AbstractSampler._abc_negative_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.energy	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#energy
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.sample	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#sample
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.__init__	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#__init__
csb.statistics.samplers.AbstractSampler._abc_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.__abstractmethods__	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractMC.state	csb.statistics.samplers.mc.AbstractMC-class.html#state
csb.statistics.samplers.mc.AbstractMC._checkstate	csb.statistics.samplers.mc.AbstractMC-class.html#_checkstate
csb.statistics.samplers.AbstractSampler._abc_negative_cache_version	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache_version
csb.statistics.samplers.AbstractSampler._abc_registry	csb.statistics.samplers.AbstractSampler-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.AbstractExchangeMC	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html
csb.statistics.samplers.AbstractSampler.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.AbstractSampler._abc_negative_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.param_infos	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#param_infos
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.sample	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#sample
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._propose_swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_propose_swap
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.__init__	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#__init__
csb.statistics.samplers.AbstractSampler._abc_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#statistics
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.__abstractmethods__	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractMC.state	csb.statistics.samplers.mc.AbstractMC-class.html#state
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#swap
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.energy	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#energy
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._calc_pacc_swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_calc_pacc_swap
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.acceptance_rates	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#acceptance_rates
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._checkstate	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_checkstate
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._update_statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_update_statistics
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._accept_swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_accept_swap
csb.statistics.samplers.AbstractSampler._abc_negative_cache_version	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache_version
csb.statistics.samplers.AbstractSampler._abc_registry	csb.statistics.samplers.AbstractSampler-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.AbstractRENS	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html
csb.statistics.samplers.AbstractSampler.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.AbstractSampler._abc_negative_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.param_infos	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#param_infos
csb.statistics.samplers.mc.multichain.AbstractRENS._run_traj_generator	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_run_traj_generator
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.sample	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#sample
csb.statistics.samplers.mc.multichain.AbstractRENS._propose_swap	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_propose_swap
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.__init__	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#__init__
csb.statistics.samplers.AbstractSampler._abc_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#statistics
csb.statistics.samplers.mc.multichain.AbstractRENS._get_init_temperature	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_get_init_temperature
csb.statistics.samplers.mc.multichain.AbstractRENS.__abstractmethods__	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractMC.state	csb.statistics.samplers.mc.AbstractMC-class.html#state
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#swap
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.energy	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#energy
csb.statistics.samplers.mc.multichain.AbstractRENS._calc_pacc_swap	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_calc_pacc_swap
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.acceptance_rates	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#acceptance_rates
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._checkstate	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_checkstate
csb.statistics.samplers.mc.multichain.AbstractRENS._propagator_factory	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_propagator_factory
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._update_statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_update_statistics
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csb.statistics.samplers.mc.multichain.AbstractExchangeMC.swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#swap
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csb.statistics.samplers.mc.multichain.Gradient	csb.statistics.samplers.mc.multichain.Gradient-class.html
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csb.numeric.integrators.AbstractGradient.__call__	csb.numeric.integrators.AbstractGradient-class.html#__call__
csb.statistics.samplers.mc.multichain.Gradient.evaluate	csb.statistics.samplers.mc.multichain.Gradient-class.html#evaluate
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csb.statistics.samplers.mc.multichain.HMCStepRENS	csb.statistics.samplers.mc.multichain.HMCStepRENS-class.html
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csb.statistics.samplers.mc.multichain.AbstractExchangeMC.param_infos	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#param_infos
csb.statistics.samplers.mc.multichain.AbstractStepRENS._run_traj_generator	csb.statistics.samplers.mc.multichain.AbstractStepRENS-class.html#_run_traj_generator
csb.statistics.samplers.mc.multichain.HMCStepRENS._add_gradients	csb.statistics.samplers.mc.multichain.HMCStepRENS-class.html#_add_gradients
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csb.statistics.samplers.mc.multichain.AbstractExchangeMC.statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#statistics
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csb.statistics.samplers.mc.multichain.AbstractExchangeMC.swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#swap
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.energy	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#energy
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csb.statistics.samplers.mc.multichain.AbstractExchangeMC.acceptance_rates	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#acceptance_rates
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csb.statistics.samplers.mc.multichain.InterpolationFactory	csb.statistics.samplers.mc.multichain.InterpolationFactory-class.html
csb.statistics.samplers.mc.multichain.InterpolationFactory.tau	csb.statistics.samplers.mc.multichain.InterpolationFactory-class.html#tau
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csb.statistics.samplers.mc.multichain.InterpolationFactory.__init__	csb.statistics.samplers.mc.multichain.InterpolationFactory-class.html#__init__
csb.statistics.samplers.mc.multichain.MDRENS	csb.statistics.samplers.mc.multichain.MDRENS-class.html
csb.statistics.samplers.AbstractSampler.__metaclass__	abc.ABCMeta-class.html
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csb.statistics.samplers.mc.multichain.AbstractExchangeMC.param_infos	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#param_infos
csb.statistics.samplers.mc.multichain.AbstractRENS._run_traj_generator	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_run_traj_generator
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.sample	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#sample
csb.statistics.samplers.mc.multichain.AbstractRENS._propose_swap	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_propose_swap
csb.statistics.samplers.mc.multichain.MDRENS.__init__	csb.statistics.samplers.mc.multichain.MDRENS-class.html#__init__
csb.statistics.samplers.AbstractSampler._abc_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#statistics
csb.statistics.samplers.mc.multichain.MDRENS._propagator_factory	csb.statistics.samplers.mc.multichain.MDRENS-class.html#_propagator_factory
csb.statistics.samplers.mc.multichain.MDRENS.__abstractmethods__	csb.statistics.samplers.mc.multichain.MDRENS-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractMC.state	csb.statistics.samplers.mc.AbstractMC-class.html#state
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#swap
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.energy	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#energy
csb.statistics.samplers.mc.multichain.AbstractRENS._calc_pacc_swap	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_calc_pacc_swap
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.acceptance_rates	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#acceptance_rates
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._checkstate	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_checkstate
csb.statistics.samplers.mc.multichain.AbstractRENS._get_init_temperature	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_get_init_temperature
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._update_statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_update_statistics
csb.statistics.samplers.AbstractSampler._abc_registry	csb.statistics.samplers.AbstractSampler-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.AbstractRENS._setup_protocol	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_setup_protocol
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._accept_swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_accept_swap
csb.statistics.samplers.AbstractSampler._abc_negative_cache_version	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache_version
csb.statistics.samplers.mc.multichain.MDRENS._calc_works	csb.statistics.samplers.mc.multichain.MDRENS-class.html#_calc_works
csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo	csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo-class.html
csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo.protocol	csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo-class.html#protocol
csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo.timestep	csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo-class.html#timestep
csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo.mass_matrix	csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo-class.html#mass_matrix
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csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo.__init__	csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo-class.html#__init__
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo._abc_cache	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo.gradient	csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo-class.html#gradient
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo.sampler1	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#sampler1
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo.sampler2	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#sampler2
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo.__abstractmethods__	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#__abstractmethods__
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csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo.traj_length	csb.statistics.samplers.mc.multichain.MDRENSSwapParameterInfo-class.html#traj_length
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csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo._abc_registry	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.RENSSwapCommunicator	csb.statistics.samplers.mc.multichain.RENSSwapCommunicator-class.html
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csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.__init__	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#__init__
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csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.traj12	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#traj12
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.sampler1	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#sampler1
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.sampler2	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#sampler2
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.__abstractmethods__	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#__abstractmethods__
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.param_info	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#param_info
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.accepted	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#accepted
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.traj21	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#traj21
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csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator._abc_registry	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.acceptance_probability	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#acceptance_probability
csb.statistics.samplers.mc.multichain.RENSTrajInfo	csb.statistics.samplers.mc.multichain.RENSTrajInfo-class.html
csb.statistics.samplers.mc.multichain.RENSTrajInfo.init_state	csb.statistics.samplers.mc.multichain.RENSTrajInfo-class.html#init_state
csb.statistics.samplers.mc.multichain.RENSTrajInfo.param_info	csb.statistics.samplers.mc.multichain.RENSTrajInfo-class.html#param_info
csb.statistics.samplers.mc.multichain.RENSTrajInfo.direction	csb.statistics.samplers.mc.multichain.RENSTrajInfo-class.html#direction
csb.statistics.samplers.mc.multichain.RENSTrajInfo.__init__	csb.statistics.samplers.mc.multichain.RENSTrajInfo-class.html#__init__
csb.statistics.samplers.mc.multichain.RESwapCommunicator	csb.statistics.samplers.mc.multichain.RESwapCommunicator-class.html
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator._abc_negative_cache	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#_abc_negative_cache
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.__init__	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#__init__
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator._abc_cache	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.traj12	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#traj12
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.sampler1	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#sampler1
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.sampler2	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#sampler2
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.__abstractmethods__	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#__abstractmethods__
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.param_info	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#param_info
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.accepted	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#accepted
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.traj21	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#traj21
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator._abc_negative_cache_version	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#_abc_negative_cache_version
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator._abc_registry	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator.acceptance_probability	csb.statistics.samplers.mc.multichain.AbstractSwapCommunicator-class.html#acceptance_probability
csb.statistics.samplers.mc.multichain.RESwapParameterInfo	csb.statistics.samplers.mc.multichain.RESwapParameterInfo-class.html
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo._abc_negative_cache	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#_abc_negative_cache
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo.__init__	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#__init__
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo._abc_cache	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo.sampler1	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#sampler1
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo.sampler2	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#sampler2
csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo.__abstractmethods__	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#__abstractmethods__
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csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo._abc_registry	csb.statistics.samplers.mc.multichain.AbstractSwapParameterInfo-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.ReplicaExchangeMC	csb.statistics.samplers.mc.multichain.ReplicaExchangeMC-class.html
csb.statistics.samplers.AbstractSampler.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.AbstractSampler._abc_negative_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.param_infos	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#param_infos
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.sample	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#sample
csb.statistics.samplers.mc.multichain.ReplicaExchangeMC._propose_swap	csb.statistics.samplers.mc.multichain.ReplicaExchangeMC-class.html#_propose_swap
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.__init__	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#__init__
csb.statistics.samplers.AbstractSampler._abc_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#statistics
csb.statistics.samplers.mc.multichain.ReplicaExchangeMC.__abstractmethods__	csb.statistics.samplers.mc.multichain.ReplicaExchangeMC-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractMC.state	csb.statistics.samplers.mc.AbstractMC-class.html#state
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#swap
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.energy	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#energy
csb.statistics.samplers.mc.multichain.ReplicaExchangeMC._calc_pacc_swap	csb.statistics.samplers.mc.multichain.ReplicaExchangeMC-class.html#_calc_pacc_swap
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.acceptance_rates	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#acceptance_rates
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._checkstate	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_checkstate
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._update_statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_update_statistics
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._accept_swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_accept_swap
csb.statistics.samplers.AbstractSampler._abc_negative_cache_version	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache_version
csb.statistics.samplers.AbstractSampler._abc_registry	csb.statistics.samplers.AbstractSampler-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.ReplicaHistory	csb.statistics.samplers.mc.multichain.ReplicaHistory-class.html
csb.statistics.samplers.mc.multichain.ReplicaHistory._change_direction	csb.statistics.samplers.mc.multichain.ReplicaHistory-class.html#_change_direction
csb.statistics.samplers.mc.multichain.ReplicaHistory.calculate_history	csb.statistics.samplers.mc.multichain.ReplicaHistory-class.html#calculate_history
csb.statistics.samplers.mc.multichain.ReplicaHistory.calculate_trajectories	csb.statistics.samplers.mc.multichain.ReplicaHistory-class.html#calculate_trajectories
csb.statistics.samplers.mc.multichain.ReplicaHistory.calculate_projected_trajectories	csb.statistics.samplers.mc.multichain.ReplicaHistory-class.html#calculate_projected_trajectories
csb.statistics.samplers.mc.multichain.ReplicaHistory.__init__	csb.statistics.samplers.mc.multichain.ReplicaHistory-class.html#__init__
csb.statistics.samplers.mc.multichain.SingleSwapStatistics	csb.statistics.samplers.mc.multichain.SingleSwapStatistics-class.html
csb.statistics.samplers.mc.multichain.SingleSwapStatistics.total_swaps	csb.statistics.samplers.mc.multichain.SingleSwapStatistics-class.html#total_swaps
csb.statistics.samplers.mc.multichain.SingleSwapStatistics.accepted_swaps	csb.statistics.samplers.mc.multichain.SingleSwapStatistics-class.html#accepted_swaps
csb.statistics.samplers.mc.multichain.SingleSwapStatistics.acceptance_rate	csb.statistics.samplers.mc.multichain.SingleSwapStatistics-class.html#acceptance_rate
csb.statistics.samplers.mc.multichain.SingleSwapStatistics.update	csb.statistics.samplers.mc.multichain.SingleSwapStatistics-class.html#update
csb.statistics.samplers.mc.multichain.SingleSwapStatistics.__init__	csb.statistics.samplers.mc.multichain.SingleSwapStatistics-class.html#__init__
csb.statistics.samplers.mc.multichain.SwapStatistics	csb.statistics.samplers.mc.multichain.SwapStatistics-class.html
csb.statistics.samplers.mc.multichain.SwapStatistics.stats	csb.statistics.samplers.mc.multichain.SwapStatistics-class.html#stats
csb.statistics.samplers.mc.multichain.SwapStatistics.acceptance_rates	csb.statistics.samplers.mc.multichain.SwapStatistics-class.html#acceptance_rates
csb.statistics.samplers.mc.multichain.SwapStatistics.__init__	csb.statistics.samplers.mc.multichain.SwapStatistics-class.html#__init__
csb.statistics.samplers.mc.multichain.ThermostattedMDRENS	csb.statistics.samplers.mc.multichain.ThermostattedMDRENS-class.html
csb.statistics.samplers.AbstractSampler.__metaclass__	abc.ABCMeta-class.html
csb.statistics.samplers.AbstractSampler._abc_negative_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_negative_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.param_infos	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#param_infos
csb.statistics.samplers.mc.multichain.AbstractRENS._run_traj_generator	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_run_traj_generator
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.sample	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#sample
csb.statistics.samplers.mc.multichain.AbstractRENS._propose_swap	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_propose_swap
csb.statistics.samplers.mc.multichain.ThermostattedMDRENS.__init__	csb.statistics.samplers.mc.multichain.ThermostattedMDRENS-class.html#__init__
csb.statistics.samplers.AbstractSampler._abc_cache	csb.statistics.samplers.AbstractSampler-class.html#_abc_cache
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#statistics
csb.statistics.samplers.mc.multichain.ThermostattedMDRENS._propagator_factory	csb.statistics.samplers.mc.multichain.ThermostattedMDRENS-class.html#_propagator_factory
csb.statistics.samplers.mc.multichain.MDRENS.__abstractmethods__	csb.statistics.samplers.mc.multichain.MDRENS-class.html#__abstractmethods__
csb.statistics.samplers.mc.AbstractMC.state	csb.statistics.samplers.mc.AbstractMC-class.html#state
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.swap	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#swap
csb.statistics.samplers.mc.multichain.AbstractEnsembleMC.energy	csb.statistics.samplers.mc.multichain.AbstractEnsembleMC-class.html#energy
csb.statistics.samplers.mc.multichain.AbstractRENS._calc_pacc_swap	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_calc_pacc_swap
csb.statistics.samplers.mc.multichain.AbstractExchangeMC.acceptance_rates	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#acceptance_rates
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._checkstate	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_checkstate
csb.statistics.samplers.mc.multichain.AbstractRENS._get_init_temperature	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_get_init_temperature
csb.statistics.samplers.mc.multichain.AbstractExchangeMC._update_statistics	csb.statistics.samplers.mc.multichain.AbstractExchangeMC-class.html#_update_statistics
csb.statistics.samplers.AbstractSampler._abc_registry	csb.statistics.samplers.AbstractSampler-class.html#_abc_registry
csb.statistics.samplers.mc.multichain.AbstractRENS._setup_protocol	csb.statistics.samplers.mc.multichain.AbstractRENS-class.html#_setup_protocol
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csb.statistics.samplers.mc.multichain.MDRENS._calc_works	csb.statistics.samplers.mc.multichain.MDRENS-class.html#_calc_works
csb.statistics.samplers.mc.multichain.ThermostattedMDRENSSwapParameterInfo	csb.statistics.samplers.mc.multichain.ThermostattedMDRENSSwapParameterInfo-class.html
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csb.statmech.ensembles.StatisticalEnsemble.log_prob	csb.statmech.ensembles.StatisticalEnsemble-class.html#log_prob
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