# Bio.SearchIO.InfernalIO.infernal_text module

Bio.SearchIO parser for Infernal plain text output format.

class Bio.SearchIO.InfernalIO.infernal_text.InfernalTextParser(handle)

  Bases: `_BaseInfernalParser`

  Parser for the Infernal text output.

  __init__(handle)

    Initialize the class.

  __iter__()

    Iterate over query results.

  __annotate_func__ = None
  __annotations_cache__ = {}
  __firstlineno__ = 59
  __static_attributes__ = ('_meta', 'handle', 'line')

class Bio.SearchIO.InfernalIO.infernal_text.InfernalTextIndexer(*args, **kwargs)

  Bases: `SearchIndexer`

  Indexer class for Infernal plain text output.

  __init__(*args, **kwargs)

    Initialize the class.

  __iter__()

    Iterate over InfernalTextIndexer; yields query results’ key, offsets, 0.

  get_raw(offset)

    Return the raw record from the file as a bytes string.

  __abstractmethods__ = frozenset({})
  __annotate_func__ = None
  __annotations_cache__ = {}
  __firstlineno__ = 477
  __static_attributes__ = ('_preamble',)

Biopython v: 1.86

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