# Bio.SearchIO.HmmerIO.hmmer3_text module

Bio.SearchIO parser for HMMER plain text output format.

class Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextParser(handle)

  Bases: `object`

  Parser for the HMMER 3.0 text output.

  __init__(handle)

    Initialize the class.

  __iter__()

    Iterate over query results.

  __firstlineno__ = 39
  __static_attributes__ = ('_meta', 'handle', 'line')

class Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextIndexer(*args, **kwargs)

  Bases: `_BaseHmmerTextIndexer`

  Indexer class for HMMER plain text output.

  qresult_start = b'Query: '
  qresult_end = b'//'
  __iter__()

    Iterate over Hmmer3TextIndexer; yields query results’ key, offsets, 0.

  __abstractmethods__ = frozenset({})
  __annotations__ = {}
  __firstlineno__ = 424
  __static_attributes__ = ()

Biopython v: 1.85

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