\begin{Verbatim}[commandchars=\\\{\}]
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{k+kn}{from} \PYG{n+nn}{Bio} \PYG{k+kn}{import} \PYG{n}{Phylo}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{k+kn}{from} \PYG{n+nn}{Bio.Phylo.Applications} \PYG{k+kn}{import} \PYG{n}{PhymlCommandline}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n}{cmd} \PYG{o}{=} \PYG{n}{PhymlCommandline}\PYG{p}{(}\PYG{n+nb}{input}\PYG{o}{=}\PYG{l+s+s2}{\PYGZdq{}Tests/Phylip/random.phy\PYGZdq{}}\PYG{p}{)}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n}{out\PYGZus{}log}\PYG{p}{,} \PYG{n}{err\PYGZus{}log} \PYG{o}{=} \PYG{n}{cmd}\PYG{p}{()}
\end{Verbatim}
