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\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n}{AlignIO}\PYG{o}{.}\PYG{n}{write}\PYG{p}{([}\PYG{n}{alignment}\PYG{p}{],} \PYG{l+s+s2}{\PYGZdq{}PF05371\PYGZus{}seed.aln\PYGZdq{}}\PYG{p}{,} \PYG{l+s+s2}{\PYGZdq{}clustal\PYGZdq{}}\PYG{p}{)}
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