\begin{Verbatim}[commandchars=\\\{\}]
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n}{threshold} \PYG{o}{=} \PYG{n}{distribution}\PYG{o}{.}\PYG{n}{threshold\PYGZus{}fpr}\PYG{p}{(}\PYG{l+m+mf}{0.01}\PYG{p}{)}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s2}{\PYGZdq{}}\PYG{l+s+si}{\PYGZpc{}5.3f}\PYG{l+s+s2}{\PYGZdq{}} \PYG{o}{\PYGZpc{}} \PYG{n}{threshold}\PYG{p}{)}
\PYG{g+go}{4.009}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{k}{for} \PYG{n}{position}\PYG{p}{,} \PYG{n}{score} \PYG{o+ow}{in} \PYG{n}{pssm}\PYG{o}{.}\PYG{n}{search}\PYG{p}{(}\PYG{n}{test\PYGZus{}seq}\PYG{p}{,} \PYG{n}{threshold}\PYG{o}{=}\PYG{n}{threshold}\PYG{p}{):}
\PYG{g+gp}{... }    \PYG{n+nb}{print}\PYG{p}{(}\PYG{l+s+s2}{\PYGZdq{}Position }\PYG{l+s+si}{\PYGZpc{}d}\PYG{l+s+s2}{: score = }\PYG{l+s+si}{\PYGZpc{}5.3f}\PYG{l+s+s2}{\PYGZdq{}} \PYG{o}{\PYGZpc{}} \PYG{p}{(}\PYG{n}{position}\PYG{p}{,} \PYG{n}{score}\PYG{p}{))}
\PYG{g+gp}{...}
\PYG{g+go}{Position 0: score = 5.622}
\PYG{g+go}{Position \PYGZhy{}20: score = 4.601}
\PYG{g+go}{Position 13: score = 5.738}
\PYG{g+go}{Position \PYGZhy{}6: score = 4.601}
\end{Verbatim}
