\begin{Verbatim}[commandchars=\\\{\}]
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{k+kn}{from} \PYG{n+nn}{Bio} \PYG{k+kn}{import} \PYG{n}{AlignIO}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n}{alignment} \PYG{o}{=} \PYG{n}{AlignIO}\PYG{o}{.}\PYG{n}{read}\PYG{p}{(}\PYG{l+s+s2}{\PYGZdq{}PF05371\PYGZus{}seed.sth\PYGZdq{}}\PYG{p}{,} \PYG{l+s+s2}{\PYGZdq{}stockholm\PYGZdq{}}\PYG{p}{)}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n+nb}{print}\PYG{p}{(}\PYG{n+nb}{format}\PYG{p}{(}\PYG{n}{alignment}\PYG{p}{,} \PYG{l+s+s2}{\PYGZdq{}clustal\PYGZdq{}}\PYG{p}{))}
\PYG{g+go}{CLUSTAL X (1.81) multiple sequence alignment}


\PYG{g+go}{COATB\PYGZus{}BPIKE/30\PYGZhy{}81                   AEPNAATNYATEAMDSLKTQAIDLISQTWPVVTTVVVAGLVIRLFKKFSS}
\PYG{g+go}{Q9T0Q8\PYGZus{}BPIKE/1\PYGZhy{}52                   AEPNAATNYATEAMDSLKTQAIDLISQTWPVVTTVVVAGLVIKLFKKFVS}
\PYG{g+go}{COATB\PYGZus{}BPI22/32\PYGZhy{}83                   DGTSTATSYATEAMNSLKTQATDLIDQTWPVVTSVAVAGLAIRLFKKFSS}
\PYG{g+gp}{...}
\end{Verbatim}
