\begin{Verbatim}[commandchars=\\\{\}]
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n}{oddsratios} \PYG{o}{=} \PYG{n}{probabilities} \PYG{o}{/} \PYG{n}{expected}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{n}{scoring\PYGZus{}matrix} \PYG{o}{=} \PYG{n}{numpy}\PYG{o}{.}\PYG{n}{log2}\PYG{p}{(}\PYG{n}{oddsratios}\PYG{p}{)}
\PYG{g+gp}{\PYGZgt{}\PYGZgt{}\PYGZgt{} }\PYG{k}{print}\PYG{p}{(}\PYG{n}{scoring\PYGZus{}matrix}\PYG{p}{)}
\PYG{g+go}{     A    C    G    T}
\PYG{g+go}{A  1.7 \PYGZhy{}2.4 \PYGZhy{}1.8 \PYGZhy{}1.8}
\PYG{g+go}{C \PYGZhy{}2.4  1.8 \PYGZhy{}2.2 \PYGZhy{}1.1}
\PYG{g+go}{G \PYGZhy{}1.8 \PYGZhy{}2.2  1.4 \PYGZhy{}2.3}
\PYG{g+go}{T \PYGZhy{}1.8 \PYGZhy{}1.1 \PYGZhy{}2.3  1.9}
\PYG{g+go}{\PYGZlt{}BLANKLINE\PYGZgt{}}
\end{Verbatim}
