Multivariate Pattern Analysis in Python

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# mvpa2.misc.fsl.McFlirtParams

class `mvpa2.misc.fsl.``McFlirtParams`(source)

  Read and write McFlirt’s motion estimation parameters from and to text files.

  Methods

  `clear`(() -> None. Remove all items from D.) |
  `copy`(() -> a shallow copy of D) |
  `fromkeys`(...) | v defaults to None.
  `get`((k[,d]) -> D[k] if k in D, ...) |
  `has_key`((k) -> True if D has a key k, else False) |
  `items`(() -> list of D’s (key, value) pairs, ...) |
  `iteritems`(() -> an iterator over the (key, ...) |
  `iterkeys`(() -> an iterator over the keys of D) |
  `itervalues`(...) |
  `keys`(() -> list of D’s keys) |
  `plot`() | Produce a simple plot of the estimated translation and rotation parameters using.
  `pop`((k[,d]) -> v, ...) | If key is not found, d is returned if given, otherwise KeyError is raised
  `popitem`(() -> (k, v), ...) | 2-tuple; but raise KeyError if D is empty.
  `select_samples`(selection) | Return new ColumnData with selected samples
  `setdefault`((k[,d]) -> D.get(k,d), ...) |
  `toarray`() | Returns the data as an array with six columns (same order as in file).
  `tofile`(filename) | Write motion parameters to file.
  `update`(([E, ...) | If E present and has a .keys() method, does: for k in E: D[k] = E[k]
  `values`(() -> list of D’s values) |
  `viewitems`(...) |
  `viewkeys`(...) |
  `viewvalues`(...) |

  Initialize McFlirtParams

  Parameters:

  source : str

  > Filename of a parameter file.

  Methods

  `clear`(() -> None. Remove all items from D.) |
  `copy`(() -> a shallow copy of D) |
  `fromkeys`(...) | v defaults to None.
  `get`((k[,d]) -> D[k] if k in D, ...) |
  `has_key`((k) -> True if D has a key k, else False) |
  `items`(() -> list of D’s (key, value) pairs, ...) |
  `iteritems`(() -> an iterator over the (key, ...) |
  `iterkeys`(() -> an iterator over the keys of D) |
  `itervalues`(...) |
  `keys`(() -> list of D’s keys) |
  `plot`() | Produce a simple plot of the estimated translation and rotation parameters using.
  `pop`((k[,d]) -> v, ...) | If key is not found, d is returned if given, otherwise KeyError is raised
  `popitem`(() -> (k, v), ...) | 2-tuple; but raise KeyError if D is empty.
  `select_samples`(selection) | Return new ColumnData with selected samples
  `setdefault`((k[,d]) -> D.get(k,d), ...) |
  `toarray`() | Returns the data as an array with six columns (same order as in file).
  `tofile`(filename) | Write motion parameters to file.
  `update`(([E, ...) | If E present and has a .keys() method, does: for k in E: D[k] = E[k]
  `values`(() -> list of D’s values) |
  `viewitems`(...) |
  `viewkeys`(...) |
  `viewvalues`(...) |

  `header_def` = ['rot1', 'rot2', 'rot3', 'x', 'y', 'z']
  `plot`()

    Produce a simple plot of the estimated translation and rotation parameters using.

    You still need to can pylab.show() or pylab.savefig() if you want to see/get anything.

  `toarray`()

    Returns the data as an array with six columns (same order as in file).

  `tofile`(filename)

    Write motion parameters to file.

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