Package mvpa :: Package atlases :: Module base

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# Module base

source code

Base classes for Anatomy atlases support

# TODOs:

> - major optimization. Now code is sloppy and slow -- plenty of checks etc

# Module Organization

mvpa.atlases.base module contains support for various atlases

Package Tree for base

Classes | [hide private]

| ReferencesLevel Level which carries reference points
Base
| BaseAtlas Base class for the atlases.
| XMLBasedAtlas
| Label Represents a label. Just to bring all relevant information together
| Level Represents a level. Just to bring all relevant information together
| LabelsLevel Level of labels.
Talairach
| PyMVPAAtlas Base class for PyMVPA atlases, such as LabelsAtlas and ReferenceAtlas
| LabelsAtlas Atlas which provides labels for the given coordinate
| ReferencesAtlas Atlas which provides references to the other atlases.
Exceptions
| XMLAtlasException Exception to be thrown if smth goes wrong dealing with XML based atlas

Functions | [hide private]

checkRange(coord, range) Check if coordinates are within range (0,0,0) - (range) Return True on success | source code

Imports: externals, etree, objectify, enhancedDocString, os, re, N, norm, SpaceTransformation, Linear, reuseAbsolutePath, NiftiImage, warning, debug