Package mvpa :: Package atlases :: Module fsl :: Class FSLAtlas

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# Class FSLAtlas

source code

Base class for FSL atlases

Instance Methods | [hide private]

__init__(self, *args, **kwargs) Create an atlas object based on the... XXX | source code

_loadImages(self) To be overriden in the derived classes. By default does nothing | source code

_loadData(self) To be overriden in the derived classes. By default does nothing | source code

Inherited from `base.XMLBasedAtlas`: `__getattr__`, `__getitem__`, `labelPoint`, `levelsListing`, `loadAtlas`, `setCoordT`, `version`

Inherited from `base.XMLBasedAtlas` (private): `_checkRange`, `_getLevels`, `_getLevelsDict`, `_getLevelsDict_virtual`

Inherited from `object`: `__delattr__`, `__format__`, `__getattribute__`, `__hash__`, `__new__`, `__reduce__`, `__reduce_ex__`, `__repr__`, `__setattr__`, `__sizeof__`, `__str__`, `__subclasshook__`

Static Methods | [hide private]

_checkVersion(version) To be overriden in the derived classes. By default anything is good | source code

Inherited from `base.XMLBasedAtlas` (private): `_children_tags`, `_compare_lists`

Class Variables | [hide private]

| source = `'FSL'`
| __doc__ = `enhancedDocString('FSLAtlas', locals(), XMLBasedAtlas)`
Inherited from `base.XMLBasedAtlas`: `coordT`, `extent`, `levels_dict`, `origin`, `spaceT`, `voxdim`

Properties | [hide private]

Inherited from `object`: `__class__`

Method Details | [hide private]

### __init__(self, *args, **kwargs)
(Constructor)

source code

Create an atlas object based on the... XXX

Parameters:
  - `filename` - Filename for the xml definition of the atlas
  - `resolution` - Some atlases link to multiple images at different resolutions. if None -- best resolution is selected using 0th dimension resolution
  - `image_file` - If None, overrides filename for the used imagefile, so it could load a custom (re-registered) atlas maps
  - `query_voxel` - By default [x,y,z] assumes coordinates in space, but if query_voxel is True, they are assumed to be voxel coordinates
  - `coordT` - Optional transformation to apply first
  - `levels` - What levels by default to operate on
Overrides: object.__init__

### _loadImages(self)

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To be overriden in the derived classes. By default does nothing

Overrides: base.XMLBasedAtlas._loadImages
  (inherited documentation)

### _loadData(self)

source code

To be overriden in the derived classes. By default does nothing

Overrides: base.XMLBasedAtlas._loadData

### _checkVersion(version)
Static Method

source code

To be overriden in the derived classes. By default anything is good

Overrides: base.XMLBasedAtlas._checkVersion
  (inherited documentation)