
.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/metadata_processing/plot_anonymize.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_metadata_processing_plot_anonymize.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_metadata_processing_plot_anonymize.py:


====================
Anonymize DICOM data
====================

This example is a starting point to anonymize DICOM data.

It shows how to read data and replace tags: person names, patient id,
optionally remove curves and private tags, and write the results in a new file.

.. GENERATED FROM PYTHON SOURCE LINES 12-24

.. code-block:: Python


    # authors : Guillaume Lemaitre <g.lemaitre58@gmail.com>
    # license : MIT


    import tempfile

    import pydicom
    from pydicom.data import get_testdata_file

    print(__doc__)








.. GENERATED FROM PYTHON SOURCE LINES 25-27

Anonymize a single file
##############################################################################

.. GENERATED FROM PYTHON SOURCE LINES 27-36

.. code-block:: Python


    filename = get_testdata_file('MR_small.dcm')
    dataset = pydicom.dcmread(filename)

    data_elements = ['PatientID',
                     'PatientBirthDate']
    for de in data_elements:
        print(dataset.data_element(de))





.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    (0010, 0020) Patient ID                          LO: '4MR1'
    (0010, 0030) Patient's Birth Date                DA: ''




.. GENERATED FROM PYTHON SOURCE LINES 37-40

We can define a callback function to find all tags corresponding to a person
names inside the dataset. We can also define a callback function to remove
curves tags.

.. GENERATED FROM PYTHON SOURCE LINES 40-52

.. code-block:: Python



    def person_names_callback(dataset, data_element):
        if data_element.VR == "PN":
            data_element.value = "anonymous"


    def curves_callback(dataset, data_element):
        if data_element.tag.group & 0xFF00 == 0x5000:
            del dataset[data_element.tag]









.. GENERATED FROM PYTHON SOURCE LINES 53-55

We can use the different callback function to iterate through the dataset but
also some other tags such that patient ID, etc.

.. GENERATED FROM PYTHON SOURCE LINES 55-60

.. code-block:: Python


    dataset.PatientID = "id"
    dataset.walk(person_names_callback)
    dataset.walk(curves_callback)








.. GENERATED FROM PYTHON SOURCE LINES 61-62

pydicom allows to remove private tags using ``remove_private_tags`` method

.. GENERATED FROM PYTHON SOURCE LINES 62-65

.. code-block:: Python


    dataset.remove_private_tags()








.. GENERATED FROM PYTHON SOURCE LINES 66-68

Data elements of type 3 (optional) can be easily deleted using ``del`` or
``delattr``.

.. GENERATED FROM PYTHON SOURCE LINES 68-75

.. code-block:: Python


    if 'OtherPatientIDs' in dataset:
        delattr(dataset, 'OtherPatientIDs')

    if 'OtherPatientIDsSequence' in dataset:
        del dataset.OtherPatientIDsSequence








.. GENERATED FROM PYTHON SOURCE LINES 76-78

For data elements of type 2, this is possible to blank it by assigning a
blank string.

.. GENERATED FROM PYTHON SOURCE LINES 78-83

.. code-block:: Python


    tag = 'PatientBirthDate'
    if tag in dataset:
        dataset.data_element(tag).value = '19000101'








.. GENERATED FROM PYTHON SOURCE LINES 84-85

Finally, this is possible to store the image

.. GENERATED FROM PYTHON SOURCE LINES 85-93

.. code-block:: Python


    data_elements = ['PatientID',
                     'PatientBirthDate']
    for de in data_elements:
        print(dataset.data_element(de))

    output_filename = tempfile.NamedTemporaryFile().name
    dataset.save_as(output_filename)




.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    (0010, 0020) Patient ID                          LO: 'id'
    (0010, 0030) Patient's Birth Date                DA: '19000101'





.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.007 seconds)


.. _sphx_glr_download_auto_examples_metadata_processing_plot_anonymize.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_anonymize.ipynb <plot_anonymize.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_anonymize.py <plot_anonymize.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_anonymize.zip <plot_anonymize.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_
