PGEN_COMPRESS(1)

NAME
pgen_compress - whole genome SNP analysis

DESCRIPTION
Usage: pgen_compress [-i] <input .bed or .pgen> <output filename> [sample_ct]

    * sample_ct is required when loading a .bed file * -i causes the index to be saved to a separate .pgen.pgi file (usually it's

    embedded at the front of the .pgen); this is compatible with fully sequential .pgen writing

pgen_compress -u <input .pgen> <output .bed>

pgen_compress [-i] <input .bed or .pgen> <output filename> [sample_ct]

    * sample_ct is required when loading a .bed file * -i causes the index to be saved to a separate .pgen.pgi file (usually it's

    embedded at the front of the .pgen); this is compatible with fully sequential .pgen writing

pgen_compress -u <input .pgen> <output .bed>

SEE ALSO
The full documentation for pgen_compress is maintained as a Texinfo manual. If the info and pgen_compress programs are properly installed at your site, the command

    info pgen_compress

should give you access to the complete manual.