# Serialized Form

## Package com.pixelmed.apps

### Class com.pixelmed.apps.DoseUtility extends ApplicationFrame implements Serializable

### Serialized Fields

#### srcDatabase

    DatabaseInformationModel srcDatabase

#### srcDatabasePanel

    javax.swing.JPanel srcDatabasePanel

#### remoteQueryRetrievePanel

    javax.swing.JPanel remoteQueryRetrievePanel

#### retrieveOnlyDoseSeriesRecordCheckBox

    javax.swing.JCheckBox retrieveOnlyDoseSeriesRecordCheckBox

#### processOnlyDoseSeriesRecordCheckBox

    javax.swing.JCheckBox processOnlyDoseSeriesRecordCheckBox

#### showOnlyDoseSummaryCheckBox

    javax.swing.JCheckBox showOnlyDoseSummaryCheckBox

#### showDetailedLogCheckBox

    javax.swing.JCheckBox showDetailedLogCheckBox

#### reportTabularLayoutCheckBox

    javax.swing.JCheckBox reportTabularLayoutCheckBox

#### caseSensitiveCodeMeaningValidationCheckBox

    javax.swing.JCheckBox caseSensitiveCodeMeaningValidationCheckBox

#### deidentifyWhenSendingToRegistryCheckBox

    javax.swing.JCheckBox deidentifyWhenSendingToRegistryCheckBox

#### queryFilterPatientNameTextField

    javax.swing.JTextField queryFilterPatientNameTextField

#### queryFilterPatientIDTextField

    javax.swing.JTextField queryFilterPatientIDTextField

#### queryFilterStudyDateTextField

    javax.swing.JTextField queryFilterStudyDateTextField

#### progressBarUpdater

    SafeProgressBarUpdaterThread progressBarUpdater

#### cursorChanger

    SafeCursorChanger cursorChanger

#### logger

    MessageLogger logger

#### networkApplicationProperties

    NetworkApplicationProperties networkApplicationProperties

#### networkApplicationInformation

    NetworkApplicationInformation networkApplicationInformation

#### ftpApplicationProperties

    FTPApplicationProperties ftpApplicationProperties

#### ftpRemoteHostInformation

    FTPRemoteHostInformation ftpRemoteHostInformation

#### currentRemoteQueryInformationModel

    QueryInformationModel currentRemoteQueryInformationModel

#### currentRemoteQueryTreeBrowser

    QueryTreeBrowser currentRemoteQueryTreeBrowser

#### ourCalledAETitle

    java.lang.String ourCalledAETitle

#### savedImagesFolder

    java.io.File savedImagesFolder

#### storageSOPClassSCPDispatcher

    StorageSOPClassSCPDispatcher storageSOPClassSCPDispatcher

#### currentDatabaseTreeRecordSelections

    DatabaseTreeRecord[] currentDatabaseTreeRecordSelections

#### importDirectoryPath

    java.lang.String importDirectoryPath

#### activeThread

    java.lang.Thread activeThread

### Class com.pixelmed.apps.DownloadOrTransmit extends ApplicationFrame implements Serializable

### Serialized Fields

#### srcDatabase

    DatabaseInformationModel srcDatabase

#### srcDatabasePanel

    javax.swing.JPanel srcDatabasePanel

#### remoteQueryRetrievePanel

    javax.swing.JPanel remoteQueryRetrievePanel

#### showDetailedLogCheckBox

    javax.swing.JCheckBox showDetailedLogCheckBox

#### zipExportCheckBox

    javax.swing.JCheckBox zipExportCheckBox

#### hierarchicalExportCheckBox

    javax.swing.JCheckBox hierarchicalExportCheckBox

#### addDicomDirectoryCheckBox

    javax.swing.JCheckBox addDicomDirectoryCheckBox

#### queryFilterPatientNameTextField

    javax.swing.JTextField queryFilterPatientNameTextField

#### queryFilterPatientIDTextField

    javax.swing.JTextField queryFilterPatientIDTextField

#### queryFilterStudyDateTextField

    javax.swing.JTextField queryFilterStudyDateTextField

#### progressBarUpdater

    SafeProgressBarUpdaterThread progressBarUpdater

#### cursorChanger

    SafeCursorChanger cursorChanger

#### logger

    MessageLogger logger

#### networkApplicationProperties

    NetworkApplicationProperties networkApplicationProperties

#### networkApplicationInformation

    NetworkApplicationInformation networkApplicationInformation

#### ftpApplicationProperties

    FTPApplicationProperties ftpApplicationProperties

#### ftpRemoteHostInformation

    FTPRemoteHostInformation ftpRemoteHostInformation

#### currentRemoteQueryInformationModel

    QueryInformationModel currentRemoteQueryInformationModel

#### currentRemoteQueryTreeBrowser

    QueryTreeBrowser currentRemoteQueryTreeBrowser

#### currentRemoteQuerySelectionQueryTreeRecord

    QueryTreeRecord currentRemoteQuerySelectionQueryTreeRecord

#### currentRemoteQuerySelectionUniqueKeys

    AttributeList currentRemoteQuerySelectionUniqueKeys

#### currentRemoteQuerySelectionUniqueKey

    Attribute currentRemoteQuerySelectionUniqueKey

#### currentRemoteQuerySelectionRetrieveAE

    java.lang.String currentRemoteQuerySelectionRetrieveAE

#### currentRemoteQuerySelectionLevel

    java.lang.String currentRemoteQuerySelectionLevel

#### ourCalledAETitle

    java.lang.String ourCalledAETitle

#### savedImagesFolder

    java.io.File savedImagesFolder

#### storageSOPClassSCPDispatcher

    StorageSOPClassSCPDispatcher storageSOPClassSCPDispatcher

#### currentDatabaseTreeRecordSelections

    DatabaseTreeRecord[] currentDatabaseTreeRecordSelections

#### exportDirectoryPath

    java.lang.String exportDirectoryPath

#### importDirectoryPath

    java.lang.String importDirectoryPath

#### activeThread

    java.lang.Thread activeThread

### Class com.pixelmed.apps.MergeCompositeContext.Group extends java.util.TreeSet<java.lang.String> implements Serializable

### Serialized Fields

#### identity

    java.lang.String identity

#### context

    CompositeInstanceContext context

#### sequenceNumber

    int sequenceNumber

## Package com.pixelmed.convert

### Class com.pixelmed.convert.NIfTI1Exception extends java.lang.Exception implements Serializable

### Class com.pixelmed.convert.NRRDException extends java.lang.Exception implements Serializable

## Package com.pixelmed.database

### Class com.pixelmed.database.MapTableBrowser extends javax.swing.JTable implements Serializable

### Class com.pixelmed.database.MapTableModel extends javax.swing.table.AbstractTableModel implements Serializable

### Serialized Fields

#### columnCount

    int columnCount

#### rowCount

    int rowCount

#### columnNames

    java.lang.String[] columnNames

#### data

    java.lang.Object[][] data

#### includeList

    java.util.HashSet<E> includeList

#### excludeList

    java.util.HashSet<E> excludeList

## Package com.pixelmed.dicom

### Class com.pixelmed.dicom.AttributeList extends java.util.TreeMap<AttributeTag,Attribute> implements Serializable

### Serialized Fields

#### decompressPixelData

    boolean decompressPixelData

#### pixelDataWasDecompressed

    boolean pixelDataWasDecompressed

#### pixelDataWasLossy

    boolean pixelDataWasLossy

#### lossyMethod

    java.lang.String lossyMethod

#### compressionRatio

    double compressionRatio

#### iioMetadata

    javax.imageio.metadata.IIOMetadata[] iioMetadata

#### colorSpaceWasConvertedToRGBDuringDecompression

    boolean colorSpaceWasConvertedToRGBDuringDecompression

### Class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModel extends AttributeListTableModel implements Serializable

### Class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModelAllFrames extends AttributeListFunctionalGroupsTableModel implements Serializable

### Serialized Fields

#### set

    java.util.TreeSet<E> set

#### values

    java.util.HashMap<K,V> values

### Class com.pixelmed.dicom.AttributeListFunctionalGroupsTableModelOneFrame extends AttributeListFunctionalGroupsTableModel implements Serializable

### Serialized Fields

#### set

    java.util.TreeSet<E> set

#### values

    java.util.HashMap<K,V> values

### Class com.pixelmed.dicom.AttributeListTableBrowser extends javax.swing.JTable implements Serializable

### Class com.pixelmed.dicom.AttributeListTableModel extends javax.swing.table.AbstractTableModel implements Serializable

### Serialized Fields

#### columnCount

    int columnCount

#### rowCount

    int rowCount

#### columnNames

    java.lang.String[] columnNames

#### data

    java.lang.Object[][] data

#### includeList

    java.util.HashSet<E> includeList

#### excludeList

    java.util.HashSet<E> excludeList

### Class com.pixelmed.dicom.DicomException extends java.lang.Exception implements Serializable

### Class com.pixelmed.dicom.SetOfDicomFiles extends java.util.HashSet implements Serializable

### Serialized Fields

#### setOfSOPClassUIDs

    java.util.HashSet<E> setOfSOPClassUIDs

### Class com.pixelmed.dicom.SetOfFrameSets extends java.util.HashSet<FrameSet> implements Serializable

### Class com.pixelmed.dicom.StandaloneAttributeTreeBrowser extends javax.swing.JFrame implements Serializable

### Class com.pixelmed.dicom.StructuredReportBrowser extends javax.swing.JFrame implements Serializable

### Serialized Fields

#### tree

    javax.swing.JTree tree

Deprecated.

#### treeModel

    StructuredReport treeModel

Deprecated.

## Package com.pixelmed.display

### Class com.pixelmed.display.ApplicationFrame extends javax.swing.JFrame implements Serializable

### Serialized Fields

#### statusBarManager

    com.pixelmed.display.StatusBarManager statusBarManager

#### applicationProperties

    java.util.Properties applicationProperties

#### applicationPropertyFileName

    java.lang.String applicationPropertyFileName

### Class com.pixelmed.display.DicomBrowser extends ApplicationFrame implements Serializable

### Class com.pixelmed.display.DicomCleaner extends ApplicationFrame implements Serializable

### Serialized Fields

#### resourceBundle

    java.util.ResourceBundle resourceBundle

#### srcDatabase

    DatabaseInformationModel srcDatabase

#### dstDatabase

    DatabaseInformationModel dstDatabase

#### srcDatabasePanel

    javax.swing.JPanel srcDatabasePanel

#### dstDatabasePanel

    javax.swing.JPanel dstDatabasePanel

#### remoteQueryRetrievePanel

    javax.swing.JPanel remoteQueryRetrievePanel

#### removeIdentityCheckBox

    javax.swing.JCheckBox removeIdentityCheckBox

#### removeDescriptionsCheckBox

    javax.swing.JCheckBox removeDescriptionsCheckBox

#### removeSeriesDescriptionsCheckBox

    javax.swing.JCheckBox removeSeriesDescriptionsCheckBox

#### removeProtocolNameCheckBox

    javax.swing.JCheckBox removeProtocolNameCheckBox

#### removeCharacteristicsCheckBox

    javax.swing.JCheckBox removeCharacteristicsCheckBox

#### removeDeviceIdentityCheckBox

    javax.swing.JCheckBox removeDeviceIdentityCheckBox

#### removeInstitutionIdentityCheckBox

    javax.swing.JCheckBox removeInstitutionIdentityCheckBox

#### cleanUIDsCheckBox

    javax.swing.JCheckBox cleanUIDsCheckBox

#### removePrivateCheckBox

    javax.swing.JCheckBox removePrivateCheckBox

#### addContributingEquipmentCheckBox

    javax.swing.JCheckBox addContributingEquipmentCheckBox

#### removeClinicalTrialAttributesCheckBox

    javax.swing.JCheckBox removeClinicalTrialAttributesCheckBox

#### zipExportCheckBox

    javax.swing.JCheckBox zipExportCheckBox

#### hierarchicalExportCheckBox

    javax.swing.JCheckBox hierarchicalExportCheckBox

#### replacePatientNameCheckBox

    javax.swing.JCheckBox replacePatientNameCheckBox

#### replacePatientIDCheckBox

    javax.swing.JCheckBox replacePatientIDCheckBox

#### replaceAccessionNumberCheckBox

    javax.swing.JCheckBox replaceAccessionNumberCheckBox

#### modifyDatesCheckBox

    javax.swing.JCheckBox modifyDatesCheckBox

#### replacementPatientNameTextField

    javax.swing.JTextField replacementPatientNameTextField

#### replacementPatientIDTextField

    javax.swing.JTextField replacementPatientIDTextField

#### replacementAccessionNumberTextField

    javax.swing.JTextField replacementAccessionNumberTextField

#### modifyDatesTextField

    javax.swing.JTextField modifyDatesTextField

#### queryFilterPatientNameTextField

    javax.swing.JTextField queryFilterPatientNameTextField

#### queryFilterPatientIDTextField

    javax.swing.JTextField queryFilterPatientIDTextField

#### queryFilterStudyDateTextField

    javax.swing.JTextField queryFilterStudyDateTextField

#### progressBarUpdater

    SafeProgressBarUpdaterThread progressBarUpdater

#### cursorChanger

    SafeCursorChanger cursorChanger

#### logger

    MessageLogger logger

#### networkApplicationProperties

    NetworkApplicationProperties networkApplicationProperties

#### networkApplicationInformation

    NetworkApplicationInformation networkApplicationInformation

#### currentRemoteQueryInformationModel

    QueryInformationModel currentRemoteQueryInformationModel

#### currentRemoteQuerySelectionQueryTreeRecord

    QueryTreeRecord currentRemoteQuerySelectionQueryTreeRecord

#### currentRemoteQuerySelectionUniqueKeys

    AttributeList currentRemoteQuerySelectionUniqueKeys

#### currentRemoteQuerySelectionUniqueKey

    Attribute currentRemoteQuerySelectionUniqueKey

#### currentRemoteQuerySelectionRetrieveAE

    java.lang.String currentRemoteQuerySelectionRetrieveAE

#### currentRemoteQuerySelectionLevel

    java.lang.String currentRemoteQuerySelectionLevel

#### ourCalledAETitle

    java.lang.String ourCalledAETitle

#### earliestDatesIndexedBySourceFilePath

    java.util.Map<K,V> earliestDatesIndexedBySourceFilePath

#### savedImagesFolder

    java.io.File savedImagesFolder

#### storageSOPClassSCPDispatcher

    StorageSOPClassSCPDispatcher storageSOPClassSCPDispatcher

#### currentSourceDatabaseSelections

    DatabaseTreeRecord[] currentSourceDatabaseSelections

#### currentSourceFilePathSelections

    java.util.Vector<E> currentSourceFilePathSelections

#### currentDestinationDatabaseSelections

    DatabaseTreeRecord[] currentDestinationDatabaseSelections

#### currentDestinationFilePathSelections

    java.util.Vector<E> currentDestinationFilePathSelections

#### importDirectoryPath

    java.lang.String importDirectoryPath

#### exportDirectoryPath

    java.lang.String exportDirectoryPath

#### activeThread

    java.lang.Thread activeThread

### Class com.pixelmed.display.DicomCleaner.OurDicomImageBlackout extends DicomImageBlackout implements Serializable

### Class com.pixelmed.display.DicomImageBlackout extends javax.swing.JFrame implements Serializable

### Serialized Fields

#### ourAETitle

    java.lang.String ourAETitle

#### dicomFileNames

    java.lang.String[] dicomFileNames

#### currentFileName

    java.lang.String currentFileName

#### currentFileNumber

    int currentFileNumber

#### mainPanel

    javax.swing.Box mainPanel

#### multiPanel

    javax.swing.JPanel multiPanel

#### imagePanel

    SingleImagePanel imagePanel

#### list

    AttributeList list

#### sImg

    SourceImage sImg

#### changesWereMade

    boolean changesWereMade

#### previousRows

    int previousRows

#### previousColumns

    int previousColumns

#### previousPersistentDrawingShapes

    java.util.Vector<E> previousPersistentDrawingShapes

#### cineSliderControlsPanel

    javax.swing.JPanel cineSliderControlsPanel

#### cineSliderChangeListener

    DicomImageBlackout.CineSliderChangeListener cineSliderChangeListener

#### cineSlider

    javax.swing.JSlider cineSlider

#### imagesRemainingLabel

    javax.swing.JLabel imagesRemainingLabel

#### ourEventContext

    EventContext ourEventContext

#### burnInOverlays

    boolean burnInOverlays

#### useZeroBlackoutValue

    boolean useZeroBlackoutValue

#### usePixelPaddingBlackoutValue

    boolean usePixelPaddingBlackoutValue

#### useZeroBlackoutValueCheckBox

    javax.swing.JCheckBox useZeroBlackoutValueCheckBox

#### usePixelPaddingBlackoutValueCheckBox

    javax.swing.JCheckBox usePixelPaddingBlackoutValueCheckBox

#### ourFrameSelectionChangeListener

    com.pixelmed.display.DicomImageBlackout.OurFrameSelectionChangeListener ourFrameSelectionChangeListener

#### burnedinflag

    int burnedinflag

#### statusNotificationHandler

    DicomImageBlackout.StatusNotificationHandler statusNotificationHandler

#### applyActionListener

    DicomImageBlackout.ApplyActionListener applyActionListener

#### saveActionListener

    DicomImageBlackout.SaveActionListener saveActionListener

#### nextActionListener

    DicomImageBlackout.NextActionListener nextActionListener

#### blackoutApplyButton

    javax.swing.JButton blackoutApplyButton

#### blackoutSaveButton

    javax.swing.JButton blackoutSaveButton

#### blackoutNextButton

    javax.swing.JButton blackoutNextButton

### Class com.pixelmed.display.DicomImageViewer extends ApplicationFrame implements Serializable

### Serialized Fields

#### databaseApplicationProperties

    DatabaseApplicationProperties databaseApplicationProperties

#### networkApplicationProperties

    NetworkApplicationProperties networkApplicationProperties

#### networkApplicationInformation

    NetworkApplicationInformation networkApplicationInformation

#### storedFilePathStrategy

    StoredFilePathStrategy storedFilePathStrategy

#### savedImagesFolder

    java.io.File savedImagesFolder

#### lastDirectoryPath

    java.lang.String lastDirectoryPath

#### multiPanel

    javax.swing.JPanel multiPanel

#### displayListOfPossibleReferenceImagesForImages

    javax.swing.JList<E> displayListOfPossibleReferenceImagesForImages

#### displayListOfPossibleBackgroundImagesForSpectra

    javax.swing.JList<E> displayListOfPossibleBackgroundImagesForSpectra

#### displayListOfPossibleReferenceImagesForSpectra

    javax.swing.JList<E> displayListOfPossibleReferenceImagesForSpectra

#### databaseTreeScrollPane

    javax.swing.JScrollPane databaseTreeScrollPane

#### dicomdirTreeScrollPane

    javax.swing.JScrollPane dicomdirTreeScrollPane

#### scrollPaneOfCurrentAttributes

    javax.swing.JScrollPane scrollPaneOfCurrentAttributes

#### attributeFrameTableScrollPane

    javax.swing.JScrollPane attributeFrameTableScrollPane

#### attributeTreeScrollPane

    javax.swing.JScrollPane attributeTreeScrollPane

#### queryTreeScrollPane

    javax.swing.JScrollPane queryTreeScrollPane

#### structuredReportTreeScrollPane

    javax.swing.JScrollPane structuredReportTreeScrollPane

#### cursorChanger

    SafeCursorChanger cursorChanger

#### databaseInformationModel

    DatabaseInformationModel databaseInformationModel

#### applicationWidth

    int applicationWidth

#### applicationHeight

    int applicationHeight

#### imagesPerRow

    int imagesPerRow

#### imagesPerCol

    int imagesPerCol

#### imageLocalizerManager

    com.pixelmed.display.ImageLocalizerManager imageLocalizerManager

#### spectroscopyLocalizerManager

    com.pixelmed.display.SpectroscopyLocalizerManager spectroscopyLocalizerManager

#### modelOfCurrentAttributesForCurrentFrameBrowser

    AttributeListFunctionalGroupsTableModelOneFrame modelOfCurrentAttributesForCurrentFrameBrowser

#### tableOfCurrentAttributesForCurrentFrameBrowser

    AttributeListTableBrowser tableOfCurrentAttributesForCurrentFrameBrowser

#### modelOfCurrentAttributesForAllFramesBrowser

    AttributeListFunctionalGroupsTableModelAllFrames modelOfCurrentAttributesForAllFramesBrowser

#### tableOfCurrentAttributesForAllFramesBrowser

    AttributeListTableBrowser tableOfCurrentAttributesForAllFramesBrowser

#### currentDicomDirectory

    DicomDirectory currentDicomDirectory

#### mainPanelFrameSelectionChangeListener

    com.pixelmed.display.DicomImageViewer.OurFrameSelectionChangeListener mainPanelFrameSelectionChangeListener

#### mainPanelFrameSortOrderChangeListener

    com.pixelmed.display.DicomImageViewer.OurFrameSortOrderChangeListener mainPanelFrameSortOrderChangeListener

#### currentSourceIndex

    int currentSourceIndex

#### currentSourceSortOrder

    int[] currentSourceSortOrder

#### browserPane

    javax.swing.JTabbedPane browserPane

#### displayControlsPanel

    javax.swing.JPanel displayControlsPanel

#### dicomdirControlsPanel

    javax.swing.JPanel dicomdirControlsPanel

#### databaseControlsPanel

    javax.swing.JPanel databaseControlsPanel

#### queryControlsPanel

    javax.swing.JPanel queryControlsPanel

#### spectroscopyControlsPanel

    javax.swing.JPanel spectroscopyControlsPanel

#### structuredReportTreeControlsPanel

    javax.swing.JPanel structuredReportTreeControlsPanel

#### sourceImageVOILUTSelectorPanel

    com.pixelmed.display.SourceImageVOILUTSelectorPanel sourceImageVOILUTSelectorPanel

#### sourceImageWindowLinearCalculationSelectorPanel

    com.pixelmed.display.SourceImageWindowLinearCalculationSelectorPanel sourceImageWindowLinearCalculationSelectorPanel

#### sourceImageWindowingAccelerationSelectorPanel

    com.pixelmed.display.SourceImageWindowingAccelerationSelectorPanel sourceImageWindowingAccelerationSelectorPanel

#### sourceImageGraphicDisplaySelectorPanel

    com.pixelmed.display.SourceImageGraphicDisplaySelectorPanel sourceImageGraphicDisplaySelectorPanel

#### sourceImageShutterSelectorPanel

    com.pixelmed.display.SourceImageShutterSelectorPanel sourceImageShutterSelectorPanel

#### ourBrowserPaneChangeListener

    com.pixelmed.display.DicomImageViewer.OurBrowserPaneChangeListener ourBrowserPaneChangeListener

#### currentRemoteQueryInformationModel

    QueryInformationModel currentRemoteQueryInformationModel

#### currentRemoteQueryFilter

    AttributeList currentRemoteQueryFilter

#### currentRemoteQuerySelectionQueryTreeRecord

    QueryTreeRecord currentRemoteQuerySelectionQueryTreeRecord

#### currentRemoteQuerySelectionUniqueKeys

    AttributeList currentRemoteQuerySelectionUniqueKeys

#### currentRemoteQuerySelectionUniqueKey

    Attribute currentRemoteQuerySelectionUniqueKey

#### currentRemoteQuerySelectionRetrieveAE

    java.lang.String currentRemoteQuerySelectionRetrieveAE

#### currentRemoteQuerySelectionLevel

    java.lang.String currentRemoteQuerySelectionLevel

#### currentFilePathSelections

    java.util.Vector<E> currentFilePathSelections

#### currentDatabaseTreeRecordSelections

    DatabaseTreeRecord[] currentDatabaseTreeRecordSelections

#### currentlyDisplayedInstanceFilePath

    java.lang.String currentlyDisplayedInstanceFilePath

#### currentAttributeListForDatabaseImport

    AttributeList currentAttributeListForDatabaseImport

#### backgroundImageListMappedToFilenames

    java.util.TreeMap<K,V> backgroundImageListMappedToFilenames

#### referenceImageListMappedToFilenames

    java.util.TreeMap<K,V> referenceImageListMappedToFilenames

#### referenceImagePanelForImages

    javax.swing.JPanel referenceImagePanelForImages

#### referenceImagePanelForSpectra

    javax.swing.JPanel referenceImagePanelForSpectra

#### attributeTreeSortOrderButtons

    javax.swing.ButtonGroup attributeTreeSortOrderButtons

### Class com.pixelmed.display.DisplayStructuredReportBrowser extends StructuredReportBrowser implements Serializable

### Serialized Fields

#### frameWidthWanted

    int frameWidthWanted

#### frameHeightWanted

    int frameHeightWanted

#### mapOfSOPInstanceUIDToReferencedFileName

    java.util.Map<K,V> mapOfSOPInstanceUIDToReferencedFileName

### Class com.pixelmed.display.IconListBrowser.OurCellRenderer extends javax.swing.JLabel implements Serializable

### Class com.pixelmed.display.PlotGraph extends javax.swing.JComponent implements Serializable

### Serialized Fields

#### samples

    float[] samples

#### statistics

    PlotGraph.FloatArrayStatistics statistics

#### nTilesPerColumn

    int nTilesPerColumn

#### nTilesPerRow

    int nTilesPerRow

#### samplesPerRow

    int samplesPerRow

#### samplesPerTile

    int samplesPerTile

#### widthOfTile

    float widthOfTile

#### heightOfTile

    float heightOfTile

#### imageOfRenderedPlot

    java.awt.image.BufferedImage imageOfRenderedPlot

### Class com.pixelmed.display.SingleImagePanel extends javax.swing.JComponent implements Serializable

### Serialized Fields

#### sImg

    SourceImage sImg

#### currentSrcImageIndex

    int currentSrcImageIndex

#### currentSrcImageSortOrder

    int[] currentSrcImageSortOrder

#### cachedResizedImage

    java.awt.image.BufferedImage cachedResizedImage

#### cachedResizedSelectedRegionImage

    java.awt.image.BufferedImage cachedResizedSelectedRegionImage

#### cachedPreWindowedImage

    java.awt.image.BufferedImage cachedPreWindowedImage

#### offsetDrawingOfResizedSelectedRegionImageX

    int offsetDrawingOfResizedSelectedRegionImageX

#### offsetDrawingOfResizedSelectedRegionImageY

    int offsetDrawingOfResizedSelectedRegionImageY

#### cachedWindowSize

    java.awt.Rectangle cachedWindowSize

#### useVOILUTNotFunction

    boolean useVOILUTNotFunction

whether or not to use the supplied VOI LUT, rather than a linear or sigmoid window function

#### windowCenter

    double windowCenter

the currently selected, default or user modified window center

#### windowWidth

    double windowWidth

the currently selected, default or user modified window width

#### voiLUTIdentityWindowWidth

    double voiLUTIdentityWindowWidth

the currently selected VOI LUT window width value that will result in the application of the VOI LUT rescaling the input (index) values

#### voiLUTIdentityWindowCenter

    double voiLUTIdentityWindowCenter

the currently selected VOI LUT window center value that will result in the application of the VOI LUT rescaling the input (index) values

#### voiLUTNumberOfEntries

    int voiLUTNumberOfEntries

the currently selected VOI LUT number of entries

#### voiLUTFirstValueMapped

    int voiLUTFirstValueMapped

the currently selected VOI LUT first value mapped

#### voiLUTBitsPerEntry

    int voiLUTBitsPerEntry

the currently selected VOI LUT bits per entry

#### voiLUTData

    short[] voiLUTData

the currently selected VOI LUT Data

#### voiLUTEntryMin

    int voiLUTEntryMin

the currently selected VOI LUT minimum entry value

#### voiLUTEntryMax

    int voiLUTEntryMax

the currently selected VOI LUT maximum entry value

#### voiLUTTopOfEntryRange

    int voiLUTTopOfEntryRange

the currently selected VOI LUT top of entry range (which may be less than (2^voiLUTNumberOfEntries)-1, e.g., in buggy Agfa images)

#### useSlope

    double useSlope

the value of rescale slope to use for current frame (set when new frame selected)

#### useIntercept

    double useIntercept

the value of rescale intercept to use for current frame (set when new frame selected)

#### imgMin

    double imgMin

#### imgMax

    double imgMax

#### largestGray

    int largestGray

#### firstvalueMapped

    int firstvalueMapped

#### numberOfEntries

    int numberOfEntries

#### bitsPerEntry

    int bitsPerEntry

#### redTable

    short[] redTable

#### greenTable

    short[] greenTable

#### blueTable

    short[] blueTable

#### signed

    boolean signed

#### inverted

    boolean inverted

#### ybr

    boolean ybr

#### signMask

    int signMask

#### signBit

    int signBit

#### pad

    int pad

#### padRangeLimit

    int padRangeLimit

#### hasPad

    boolean hasPad

#### suvTransform

    SUVTransform suvTransform

#### realWorldValueTransform

    RealWorldValueTransform realWorldValueTransform

#### modalityTransform

    ModalityTransform modalityTransform

#### voiTransform

    VOITransform voiTransform

#### displayShutter

    DisplayShutter displayShutter

#### overlay

    Overlay overlay

#### imageGeometry

    GeometryOfVolume imageGeometry

#### preDefinedShapes

    java.util.Vector<E> preDefinedShapes

#### preDefinedText

    java.util.Vector<E> preDefinedText

#### localizerShapes

    java.util.Vector<E> localizerShapes

#### volumeLocalizationShapes

    java.util.Vector<E> volumeLocalizationShapes

#### interactiveDrawingShapes

    java.util.Vector<E> interactiveDrawingShapes

#### persistentDrawingShapes

    java.util.Vector<E> persistentDrawingShapes

#### selectedDrawingShapes

    java.util.Vector<E> selectedDrawingShapes

#### persistentDrawingText

    java.util.Vector<E> persistentDrawingText

#### perFrameDrawingShapes

    java.util.Vector<E>[] perFrameDrawingShapes

#### superimposedImages

    java.util.Vector<E> superimposedImages

#### demographicAndTechniqueAnnotations

    DemographicAndTechniqueAnnotations demographicAndTechniqueAnnotations

#### demographicAndTechniqueColor

    java.awt.Color demographicAndTechniqueColor

#### demographicAndTechniqueFont

    java.awt.Font demographicAndTechniqueFont

#### orientationAnnotations

    com.pixelmed.display.OrientationAnnotations orientationAnnotations

#### orientationColor

    java.awt.Color orientationColor

#### orientationFont

    java.awt.Font orientationFont

#### showOrientationsLeftSide

    boolean showOrientationsLeftSide

#### sideAndViewAnnotationString

    java.lang.String sideAndViewAnnotationString

#### sideAndViewAnnotationVerticalOffset

    int sideAndViewAnnotationVerticalOffset

#### sideAndViewAnnotationColor

    java.awt.Color sideAndViewAnnotationColor

#### sideAndViewAnnotationFont

    java.awt.Font sideAndViewAnnotationFont

#### showSideAndViewAnnotationLeftSide

    boolean showSideAndViewAnnotationLeftSide

#### originalDisplayedAreaSelection

    DisplayedAreaSelection originalDisplayedAreaSelection

#### useDisplayedAreaSelection

    DisplayedAreaSelection useDisplayedAreaSelection

#### preTransformImageRelativeCoordinates

    java.awt.geom.AffineTransform preTransformImageRelativeCoordinates

#### showZoomFactor

    boolean showZoomFactor

#### showZoomFactorLeftSide

    boolean showZoomFactorLeftSide

#### pixelSpacingInSourceImage

    double pixelSpacingInSourceImage

#### typeOfPixelSpacing

    java.lang.String typeOfPixelSpacing

#### imageToWindowCoordinateTransform

    java.awt.geom.AffineTransform imageToWindowCoordinateTransform

#### windowToImageCoordinateTransform

    java.awt.geom.AffineTransform windowToImageCoordinateTransform

#### useVOIFunction

    int useVOIFunction

#### useWindowLinearExactCalculationInsteadOfDICOMStandardMethod

    boolean useWindowLinearExactCalculationInsteadOfDICOMStandardMethod

#### windowingAccelerationValue

    double windowingAccelerationValue

#### showOverlays

    boolean showOverlays

#### applyShutter

    boolean applyShutter

#### showSuperimposedImages

    boolean showSuperimposedImages

#### typeOfPanelEventContext

    EventContext typeOfPanelEventContext

#### lastx

    int lastx

#### lasty

    int lasty

#### lastmiddley

    int lastmiddley

#### windowingMultiplier

    double windowingMultiplier

#### panningMultiplier

    double panningMultiplier

#### leftMouseMode

    SingleImagePanel.LeftMouseMode leftMouseMode

#### currentVOITransformInUse

    int currentVOITransformInUse

if -1, then use statistical value first time then user adjusted values subsequently if >= 0, then use selected VOI transform (if there is one for that frame)

#### currentLocationIn3DSpace

    double[] currentLocationIn3DSpace

This value is outside mouseMoved() only so that it doesn't need to be constantly reallocated - it is not used by any other method

#### ourWindowCenterAndWidthChangeListener

    com.pixelmed.display.SingleImagePanel.OurWindowCenterAndWidthChangeListener ourWindowCenterAndWidthChangeListener

#### ourFrameSelectionChangeListener

    com.pixelmed.display.SingleImagePanel.OurFrameSelectionChangeListener ourFrameSelectionChangeListener

#### ourFrameSortOrderChangeListener

    com.pixelmed.display.SingleImagePanel.OurFrameSortOrderChangeListener ourFrameSortOrderChangeListener

#### ourVOIFunctionChangeListener

    com.pixelmed.display.SingleImagePanel.OurVOIFunctionChangeListener ourVOIFunctionChangeListener

#### ourWindowLinearCalculationChangeListener

    com.pixelmed.display.SingleImagePanel.OurWindowLinearCalculationChangeListener ourWindowLinearCalculationChangeListener

#### ourWindowingAccelerationValueChangeListener

    com.pixelmed.display.SingleImagePanel.OurWindowingAccelerationValueChangeListener ourWindowingAccelerationValueChangeListener

#### ourGraphicDisplayChangeListener

    com.pixelmed.display.SingleImagePanel.OurGraphicDisplayChangeListener ourGraphicDisplayChangeListener

#### ourApplyShutterChangeListener

    com.pixelmed.display.SingleImagePanel.OurApplyShutterChangeListener ourApplyShutterChangeListener

#### useConvertToMostFavorableImageType

    boolean useConvertToMostFavorableImageType

#### resampler

    BufferedImageUtilities resampler

### Class com.pixelmed.display.SpectraPanel extends PlotGraph implements Serializable

### Serialized Fields

#### srcSpectra

    float[][] srcSpectra

#### nSrcSpectra

    int nSrcSpectra

#### currentSrcSpectrumIndex

    int currentSrcSpectrumIndex

#### currentSrcSpectraSortOrder

    int[] currentSrcSpectraSortOrder

#### spectroscopyGeometry

    GeometryOfVolume spectroscopyGeometry

#### spectroscopyVolumeLocalization

    SpectroscopyVolumeLocalization spectroscopyVolumeLocalization

#### lastmiddley

    int lastmiddley

#### typeOfPanelEventContext

    EventContext typeOfPanelEventContext

#### backgroundImageEventContext

    EventContext backgroundImageEventContext

#### ourFrameSelectionChangeListener

    com.pixelmed.display.SpectraPanel.OurFrameSelectionChangeListener ourFrameSelectionChangeListener

#### ourFrameSortOrderChangeListener

    com.pixelmed.display.SpectraPanel.OurFrameSortOrderChangeListener ourFrameSortOrderChangeListener

#### backgroundSImg

    SourceImage backgroundSImg

#### currentBackgroundSrcImageIndex

    int currentBackgroundSrcImageIndex

#### currentBackgroundSrcImageSortOrder

    int[] currentBackgroundSrcImageSortOrder

#### backgroundSrcImageGeometry

    GeometryOfVolume backgroundSrcImageGeometry

#### cachedBackgroundImage

    java.awt.image.BufferedImage cachedBackgroundImage

#### cacheOfImagesForSpectra

    java.util.HashMap<K,V> cacheOfImagesForSpectra

#### cacheForBounds

    java.awt.Rectangle cacheForBounds

#### ourBackgroundSourceImageSelectionChangeListener

    com.pixelmed.display.SpectraPanel.OurBackgroundSourceImageSelectionChangeListener ourBackgroundSourceImageSelectionChangeListener

## Package com.pixelmed.displaywave

### Class com.pixelmed.displaywave.ECGPanel extends javax.swing.JComponent implements Serializable

### Serialized Fields

#### samples

    short[][] samples

#### numberOfChannels

    int numberOfChannels

#### nSamplesPerChannel

    int nSamplesPerChannel

#### nSamplesPerRow

    int nSamplesPerRow

#### nTilesPerColumn

    int nTilesPerColumn

#### nTilesPerRow

    int nTilesPerRow

#### samplingIntervalInMilliSeconds

    float samplingIntervalInMilliSeconds

#### amplitudeScalingFactorInMilliVolts

    float[] amplitudeScalingFactorInMilliVolts

#### channelNames

    java.lang.String[] channelNames

#### widthOfPixelInMilliSeconds

    float widthOfPixelInMilliSeconds

#### heightOfPixelInMilliVolts

    float heightOfPixelInMilliVolts

#### timeOffsetInMilliSeconds

    float timeOffsetInMilliSeconds

#### displaySequence

    int[] displaySequence

#### width

    int width

#### height

    int height

#### imageOfRenderedPlot

    java.awt.image.BufferedImage imageOfRenderedPlot

### Class com.pixelmed.displaywave.ECGViewer extends ApplicationFrame implements Serializable

### Serialized Fields

#### milliMetresPerPixel

    float milliMetresPerPixel

#### defaultHeightOfTileInMicroVolts

    int defaultHeightOfTileInMicroVolts

#### minimumHeightOfTileInMicroVolts

    int minimumHeightOfTileInMicroVolts

#### maximumHeightOfTileInMicroVolts

    int maximumHeightOfTileInMicroVolts

#### minorIntervalHeightOfTileInMicroVolts

    int minorIntervalHeightOfTileInMicroVolts

#### majorIntervalHeightOfTileInMicroVolts

    int majorIntervalHeightOfTileInMicroVolts

#### heightOfTileSliderLabel

    java.lang.String heightOfTileSliderLabel

#### defaultHorizontalScalingInMilliMetresPerSecond

    int defaultHorizontalScalingInMilliMetresPerSecond

#### minimumHorizontalScalingInMilliMetresPerSecond

    int minimumHorizontalScalingInMilliMetresPerSecond

#### maximumHorizontalScalingInMilliMetresPerSecond

    int maximumHorizontalScalingInMilliMetresPerSecond

#### minorIntervalHorizontalScalingInMilliMetresPerSecond

    int minorIntervalHorizontalScalingInMilliMetresPerSecond

#### majorIntervalHorizontalScalingInMilliMetresPerSecond

    int majorIntervalHorizontalScalingInMilliMetresPerSecond

#### horizontalScalingSliderLabel

    java.lang.String horizontalScalingSliderLabel

#### defaultVerticalScalingInMilliMetresPerMilliVolt

    int defaultVerticalScalingInMilliMetresPerMilliVolt

#### minimumVerticalScalingInMilliMetresPerMilliVolt

    int minimumVerticalScalingInMilliMetresPerMilliVolt

#### maximumVerticalScalingInMilliMetresPerMilliVolt

    int maximumVerticalScalingInMilliMetresPerMilliVolt

#### minorIntervalVerticalScalingInMilliMetresPerMilliVolt

    int minorIntervalVerticalScalingInMilliMetresPerMilliVolt

#### majorIntervalVerticalScalingInMilliMetresPerMilliVolt

    int majorIntervalVerticalScalingInMilliMetresPerMilliVolt

#### verticalScalingSliderLabel

    java.lang.String verticalScalingSliderLabel

#### maximumSliderWidth

    int maximumSliderWidth

#### maximumSliderHeight

    int maximumSliderHeight

#### minimumAttributeTreePaneWidth

    int minimumAttributeTreePaneWidth

#### applicationWidth

    int applicationWidth

#### applicationHeight

    int applicationHeight

#### lastDirectoryPath

    java.lang.String lastDirectoryPath

## Package com.pixelmed.ftp

### Class com.pixelmed.ftp.FTPException extends java.lang.Exception implements Serializable

## Package com.pixelmed.network

### Class com.pixelmed.network.ApplicationEntityMap extends java.util.TreeMap implements Serializable

### Class com.pixelmed.network.AReleaseException extends java.lang.Exception implements Serializable

### Class com.pixelmed.network.DicomNetworkException extends java.lang.Exception implements Serializable

## Package com.pixelmed.query

### Class com.pixelmed.query.FilterPanel extends javax.swing.JPanel implements Serializable

### Serialized Fields

#### layout

    java.awt.GridBagLayout layout

#### filterList

    AttributeList filterList

## Package com.pixelmed.utils

### Class com.pixelmed.utils.JTreeWithAdditionalKeyStrokeActions extends javax.swing.JTree implements Serializable

### Class com.pixelmed.utils.PdfException extends java.lang.Exception implements Serializable

### Class com.pixelmed.utils.PhoneticStringEncoderException extends java.lang.Exception implements Serializable

## Package com.pixelmed.validate

### Class com.pixelmed.validate.CompileDicomIODDescriptionsIntoXSLT extends java.lang.Object implements Serializable

### Class com.pixelmed.validate.CompileDicomSRDescriptionsIntoXSLT extends java.lang.Object implements Serializable

### Class com.pixelmed.validate.CompileDicomSRDescriptionsIntoXSLT$0 extends java.lang.Object implements Serializable

### Class com.pixelmed.validate.CompileDicomSRDescriptionsIntoXSLT$1 extends java.lang.Object implements Serializable

### Class com.pixelmed.validate.CompileDicomSRDescriptionsIntoXSLT$2 extends java.lang.Object implements Serializable