Package: picard-tools
Version: 1.113-2
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2720
Depends: default-jre | java6-runtime, libsam-java (>= 1.113-2), python:any (>= 2.6.6-7~), libjbzip2-java, libcofoja-java, libcommons-jexl2-java
Suggests: python, r-base-core
Section: science
Priority: optional
Homepage: http://picard.sourceforge.net/
Description: Command line tools to manipulate SAM and BAM files
 SAM (Sequence Alignment/Map) format is a generic format for storing
 large nucleotide sequence alignments. Picard Tools includes these
 utilities to manipulate SAM and BAM files:
 BamToBfq                        IlluminaBasecallsToSam
 BuildBamIndex                   MarkDuplicates
 CalculateHsMetrics              MeanQualityByCycle
 CleanSam                        MergeBamAlignment
 CollectAlignmentSummaryMetrics  MergeSamFiles
 CollectGcBiasMetrics            NormalizeFasta
 CollectInsertSizeMetrics        QualityScoreDistribution
 CollectRnaSeqMetrics            ReplaceSamHeader
 CompareSAMs                     RevertSam
 CreateSequenceDictionary        SamFormatConverter
 ExtractIlluminaBarcodes         SamToFastq
 EstimateLibraryComplexity       SortSam
 FastqToSam                      ValidateSamFile
 FixMateInformation              ViewSam
