# Package picard.analysis.artifacts

package picard.analysis.artifacts

Related Packages
Package
Description
picard.analysis
picard.analysis.directed
picard.analysis.replicates
Class
Description
CollectSequencingArtifactMetrics
Quantify substitution errors caused by mismatched base pairings during various stages of sample / library prep.
ConvertSequencingArtifactToOxoG
ErrorSummaryMetrics
Summary metrics produced by `CollectSequencingArtifactMetrics` as a roll up of the context-specific error rates, to provide global error rates per type of base substitution.
SequencingArtifactMetrics
SequencingArtifactMetrics.BaitBiasDetailMetrics
Bait bias artifacts broken down by context.
SequencingArtifactMetrics.BaitBiasSummaryMetrics
Summary analysis of a single bait bias artifact, also known as a reference bias artifact.
SequencingArtifactMetrics.PreAdapterDetailMetrics
Pre-adapter artifacts broken down by context.
SequencingArtifactMetrics.PreAdapterSummaryMetrics
Summary analysis of a single pre-adapter artifact.
Transition
Enum representation of a transition from one base to any other.
Transition.Base