# Package picard.analysis.directed

package picard.analysis.directed

Related Packages
Package
Description
picard.analysis
picard.analysis.artifacts
picard.analysis.replicates
Class
Description
CollectHsMetrics
This tool takes a SAM/BAM file input and collects metrics that are specific for sequence datasets generated through hybrid-selection.
CollectTargetedMetrics<METRIC extends MultilevelMetrics, COLLECTOR extends TargetMetricsCollector<METRIC>>
Both CollectTargetedPCRMetrics and CollectHsSelection share virtually identical program structures except for the name of their targeting mechanisms (e.g.
CollectTargetedPcrMetrics
This tool calculates a set of PCR-related metrics from an aligned SAM or BAM file containing targeted sequencing data.
HsMetricCollector
Calculates HS metrics for a given SAM or BAM file.
HsMetrics
Metrics generated by CollectHsMetrics for the analysis of target-capture sequencing experiments.
InsertSizeMetricsCollector
Collects InsertSizeMetrics on the specified accumulationLevels using
PanelMetricsBase
A base class for Metrics for targeted panels.
RnaSeqMetricsCollector
RnaSeqMetricsCollector.StrandSpecificity
TargetedPcrMetrics
Metrics class for the analysis of reads obtained from targeted pcr experiments e.g.
TargetedPcrMetricsCollector
Calculates HS metrics for a given SAM or BAM file.
TargetMetrics
TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).
TargetMetricsBase
TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).
TargetMetricsCollector<METRIC_TYPE extends MultilevelMetrics>
TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).
TargetMetricsCollector.Coverage
A simple class that is used to store the coverage information about an interval.