# Hierarchy For Package picard.illumina

Package Hierarchies:

- All Packages

## Class Hierarchy

- java.lang.Object
  - picard.illumina.BarcodeExtractor
  - picard.illumina.BarcodeExtractor.BarcodeMatch
  - picard.illumina.BasecallsConverter<CLUSTER_OUTPUT_RECORD>
    - picard.illumina.SortedBasecallsConverter<CLUSTER_OUTPUT_RECORD>
    - picard.illumina.UnsortedBasecallsConverter<CLUSTER_OUTPUT_RECORD>
  - picard.illumina.BasecallsConverterBuilder<CLUSTER_OUTPUT_RECORD>
  - picard.illumina.ClusterDataToSamConverter (implements picard.illumina.BasecallsConverter.ClusterDataConverter<OUTPUT_RECORD>)
  - picard.illumina.CollectIlluminaLaneMetrics.IlluminaLaneMetricsCollector
  - picard.cmdline.CommandLineProgram
    - picard.illumina.CheckIlluminaDirectory
    - picard.illumina.CollectIlluminaBasecallingMetrics
    - picard.illumina.CollectIlluminaLaneMetrics
    - picard.illumina.ExtractBarcodesProgram
      - picard.illumina.ExtractIlluminaBarcodes
      - picard.illumina.IlluminaBasecallsToFastq
      - picard.illumina.IlluminaBasecallsToSam
    - picard.illumina.MarkIlluminaAdapters
  - picard.illumina.ExtractIlluminaBarcodes.PerTileBarcodeExtractor (implements java.lang.Runnable)
  - picard.illumina.LanePhasingMetricsCollector
  - htsjdk.samtools.metrics.MetricBase
    - picard.illumina.BarcodeMetric
    - picard.illumina.IlluminaBasecallingMetrics
    - picard.illumina.IlluminaLaneMetrics
    - picard.illumina.IlluminaPhasingMetrics

## Interface Hierarchy

- java.lang.AutoCloseable
  - java.io.Closeable
    - htsjdk.io.Writer<A>
      - picard.illumina.BasecallsConverter.ConvertedClusterDataWriter<OUTPUT_RECORD>
- picard.illumina.BasecallsConverter.ClusterDataConverter<OUTPUT_RECORD>

## Enum Class Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    - picard.illumina.DistanceMetric (implements org.broadinstitute.barclay.argparser.CommandLineParser.ClpEnum)
    - picard.illumina.IlluminaBasecallsToFastq.ReadNameFormat