# Package picard.filter

package picard.filter

Related Packages
Package
Description
picard
Classes
Class
Description
CountingAdapterFilter
Counting filter that discards reads are unaligned or aligned with MQ==0 and whose 5' ends look like adapter Sequence
CountingDuplicateFilter
Counting filter that discards reads that have been marked as duplicates.
CountingFilter
A SamRecordFilter that counts the number of bases in the reads which it filters out.
CountingFilterWrapper
A CountingFilter that wraps any SamRecordFilter and provides a count of the reads and bases filtered
CountingMapQFilter
Counting filter that discards reads below a configurable mapping quality threshold.
CountingPairedFilter
Counting filter that discards reads that are unpaired in sequencing and paired reads whose mates are not mapped.