# Package picard.arrays

package picard.arrays

Related Packages
Package
Description
picard
picard.arrays.illumina
Classes
Class
Description
BafRegressMetrics
CollectArraysVariantCallingMetrics
Collects summary and per-sample metrics about variant calls in a VCF file.
CollectArraysVariantCallingMetrics.ArraysControlCodesSummaryMetrics
CollectArraysVariantCallingMetrics.ArraysVariantCallingDetailMetrics
CollectArraysVariantCallingMetrics.ArraysVariantCallingSummaryMetrics
CombineGenotypingArrayVcfs
A simple program to combine multiple genotyping array VCFs into one VCF The input VCFs must have the same sequence dictionary and same list of variant loci.
CreateBafRegressMetricsFile
A simple program to create a standard picard metrics file from the output of bafRegress
CreateVerifyIDIntensityContaminationMetricsFile
A simple program to create a standard picard metrics file from the output of VerifyIDIntensity
GtcToVcf
Class to convert an Illumina GTC file into a VCF file.
MergePedIntoVcf
Class to take genotype calls from a ped file output from zCall and merge them into a vcf from autocall.
VcfToAdpc
A simple program to convert a Genotyping Arrays VCF to an ADPC file (Illumina intensity data file).
VerifyIDIntensityContaminationMetrics