# Hierarchy For Package picard.fingerprint

Package Hierarchies:

- All Packages

## Class Hierarchy

- java.lang.Object
  - java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    - java.util.AbstractSet<E> (implements java.util.Set<E>)
      - java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
        - picard.fingerprint.FingerprintUtils.VariantContextSet
  - java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    - java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
      - picard.fingerprint.Fingerprint
  - picard.cmdline.CommandLineProgram
    - picard.fingerprint.CalculateFingerprintMetrics
    - picard.fingerprint.CheckFingerprint
    - picard.fingerprint.ClusterCrosscheckMetrics
    - picard.fingerprint.ConvertHaplotypeDatabaseToVcf
    - picard.fingerprint.CrosscheckFingerprints
      - picard.fingerprint.CrosscheckReadGroupFingerprints
    - picard.fingerprint.ExtractFingerprint
    - picard.fingerprint.IdentifyContaminant
    - picard.fingerprint.LiftOverHaplotypeMap
  - picard.fingerprint.FingerprintChecker
  - picard.fingerprint.FingerprintIdDetails
  - picard.fingerprint.FingerprintResults
  - picard.fingerprint.FingerprintUtils
  - picard.fingerprint.HaplotypeBlock (implements java.lang.Comparable<T>)
  - picard.fingerprint.HaplotypeMap
  - picard.fingerprint.HaplotypeProbabilities
    - picard.fingerprint.CappedHaplotypeProbabilities
    - picard.fingerprint.HaplotypeProbabilitiesFromGenotype
    - picard.fingerprint.HaplotypeProbabilitiesFromGenotypeLikelihoods
    - picard.fingerprint.HaplotypeProbabilitiesFromSequence
      - picard.fingerprint.HaplotypeProbabilitiesFromContaminatorSequence
    - picard.fingerprint.HaplotypeProbabilityOfNormalGivenTumor
  - picard.fingerprint.MatchResults (implements java.lang.Comparable<T>)
  - htsjdk.samtools.metrics.MetricBase
    - picard.fingerprint.CrosscheckMetric
      - picard.fingerprint.ClusteredCrosscheckMetric
    - picard.fingerprint.FingerprintMetrics
  - picard.fingerprint.Snp (implements java.lang.Comparable<T>)

## Enum Class Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    - picard.fingerprint.CrosscheckMetric.DataType
    - picard.fingerprint.CrosscheckMetric.FingerprintResult
    - picard.fingerprint.DiploidGenotype
    - picard.fingerprint.DiploidHaplotype
    - picard.fingerprint.HaplotypeProbabilities.Genotype