# Package picard.cmdline.programgroups

package picard.cmdline.programgroups

Related Packages
Package
Description
picard.cmdline
picard.cmdline.argumentcollections
Classes
Class
Description
BaseCallingProgramGroup
Tools that process sequencing machine data, e.g.
DiagnosticsAndQCProgramGroup
Tools that collect sequencing quality-related and comparative metrics
GenotypingArraysProgramGroup
Miscellaneous tools, e.g.
IntervalsManipulationProgramGroup
Tools that process genomic intervals in various formats.
OtherProgramGroup
Miscellaneous tools, e.g.
ReadDataManipulationProgramGroup
Tools that manipulate read data in SAM, BAM or CRAM format
ReferenceProgramGroup
Tools that analyze and manipulate FASTA format references
Testing
For internal test purposes only.
VariantEvaluationProgramGroup
Tools that evaluate and refine variant calls, e.g.
VariantFilteringProgramGroup
Tools that filter variants
VariantManipulationProgramGroup
Tools that manipulate variant call format (VCF) data