# Package picard.vcf.filter

package picard.vcf.filter

Related Packages
Package
Description
picard.vcf
picard.vcf.MendelianViolations
picard.vcf.processor
Class
Description
AlleleBalanceFilter
Filters out a record if the allele balance for heterozygotes is out of a defined range across all samples.
DepthFilter
Filters out a record if all variant samples have depth lower than the given value.
FilterApplyingVariantIterator
Iterator that dynamically applies filter strings to VariantContext records supplied by an underlying iterator.
FilterVcf
Applies a set of hard filters to Variants and to Genotypes within a VCF.
FisherStrandFilter
Filters records based on the phred scaled p-value from the Fisher Strand test stored in the FS attribute.
GenotypeFilter
An interface for classes that perform Genotype filtration.
GenotypeQualityFilter
Genotype filter that filters out genotypes below a given quality threshold.
QdFilter
Filters out sites that have a QD annotation applied to them and where the QD value is lower than a lower limit.
VariantFilter
Interface for classes that can generate filters for VariantContexts.