# Hierarchy For Package picard.sam.SamErrorMetric

Package Hierarchies:

- All Packages

## Class Hierarchy

- java.lang.Object
  - picard.sam.SamErrorMetric.BaseErrorAggregation<CALCULATOR>
  - picard.sam.SamErrorMetric.BaseErrorCalculator (implements picard.sam.SamErrorMetric.BaseCalculator)
    - picard.sam.SamErrorMetric.OverlappingReadsErrorCalculator
    - picard.sam.SamErrorMetric.SimpleErrorCalculator
  - picard.cmdline.CommandLineProgram
    - picard.sam.SamErrorMetric.CollectSamErrorMetrics
  - htsjdk.samtools.metrics.MetricBase
    - picard.analysis.MergeableMetricBase
      - picard.sam.SamErrorMetric.ErrorMetric
        - picard.sam.SamErrorMetric.BaseErrorMetric
        - picard.sam.SamErrorMetric.OverlappingErrorMetric
  - picard.sam.SamErrorMetric.ReadBaseStratification
  - picard.sam.SamErrorMetric.ReadBaseStratification.BinnedReadCycleStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  - picard.sam.SamErrorMetric.ReadBaseStratification.CollectionStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  - picard.sam.SamErrorMetric.ReadBaseStratification.ConsensusStratifier
  - picard.sam.SamErrorMetric.ReadBaseStratification.FlowCellTileStratifier
  - picard.sam.SamErrorMetric.ReadBaseStratification.GCContentStratifier
  - picard.sam.SamErrorMetric.ReadBaseStratification.LongShortHomopolymerStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  - picard.sam.SamErrorMetric.ReadBaseStratification.MismatchesInReadStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
  - picard.sam.SamErrorMetric.ReadBaseStratification.NsInReadStratifier
  - picard.sam.SamErrorMetric.ReadBaseStratification.PairStratifier<T,​R> (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)

## Interface Hierarchy

- picard.sam.SamErrorMetric.BaseCalculator
- picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>

## Enum Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    - picard.sam.SamErrorMetric.ReadBaseStratification.Consensus
    - picard.sam.SamErrorMetric.ReadBaseStratification.CycleBin
    - picard.sam.SamErrorMetric.ReadBaseStratification.LongShortHomopolymer
    - picard.sam.SamErrorMetric.ReadBaseStratification.PairOrientation
    - picard.sam.SamErrorMetric.ReadBaseStratification.ReadDirection
    - picard.sam.SamErrorMetric.ReadBaseStratification.ReadOrdinality