# Package picard.analysis.directed

- Class Summary
  Class | Description
  --- | ---
  CollectHsMetrics | This tool takes a SAM/BAM file input and collects metrics that are specific for sequence datasets generated through hybrid-selection.
  CollectTargetedMetrics<METRIC extends MultilevelMetrics,​COLLECTOR extends TargetMetricsCollector<METRIC>> | Both CollectTargetedPCRMetrics and CollectHsSelection share virtually identical program structures except for the name of their targeting mechanisms (e.g.
  CollectTargetedPcrMetrics | This tool calculates a set of PCR-related metrics from an aligned SAM or BAM file containing targeted sequencing data.
  HsMetricCollector | Calculates HS metrics for a given SAM or BAM file.
  HsMetrics | Metrics generated by CollectHsMetrics for the analysis of target-capture sequencing experiments.
  InsertSizeMetricsCollector | Collects InsertSizeMetrics on the specified accumulationLevels using
  RnaSeqMetricsCollector |
  TargetedPcrMetrics | Metrics class for the analysis of reads obtained from targeted pcr experiments e.g.
  TargetedPcrMetricsCollector | Calculates HS metrics for a given SAM or BAM file.
  TargetMetrics | TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).
  TargetMetricsCollector<METRIC_TYPE extends MultilevelMetrics> | TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).
  TargetMetricsCollector.Coverage | A simple class that is used to store the coverage information about an interval.

- Enum Summary
  Enum | Description
  --- | ---
  RnaSeqMetricsCollector.StrandSpecificity |