# Serialized Form

- ## Package picard

  - ### Class picard.PicardException extends RuntimeException implements Serializable

- ## Package picard.annotation

  - ### Class picard.annotation.AnnotationException extends PicardException implements Serializable

- ## Package picard.fingerprint

  - ### Class picard.fingerprint.Fingerprint extends TreeMap<HaplotypeBlock,​HaplotypeProbabilities> implements Serializable

    - ### Serialized Fields

      - #### info

            String info

      - #### sample

            String sample

      - #### source

            Path source

  - ### Class picard.fingerprint.FingerprintUtils.VariantContextSet extends TreeSet<htsjdk.variant.variantcontext.VariantContext> implements Serializable

- ## Package picard.pedigree

  - ### Class picard.pedigree.PedFile extends TreeMap<String,​PedFile.PedTrio> implements Serializable

    - ### Serialized Fields

      - #### delimiterPattern

            Pattern delimiterPattern

      - #### delimiterString

            String delimiterString

- ## Package picard.sam.markduplicates.util

  - ### Class picard.sam.markduplicates.util.OpticalDuplicateFinder extends ReadNameParser implements Serializable

    - ### Serialized Fields

      - #### bigDuplicateSetSize

            int bigDuplicateSetSize

      - #### maxDuplicateSetSize

            long maxDuplicateSetSize

      - #### opticalDuplicatePixelDistance

            int opticalDuplicatePixelDistance

- ## Package picard.sam.util

  - ### Class picard.sam.util.ReadNameParser extends Object implements Serializable

    - ### Serialized Fields

      - #### readNamePattern

            Pattern readNamePattern

      - #### readNameRegex

            String readNameRegex

      - #### tmpLocationFields

            int[] tmpLocationFields

      - #### useOptimizedDefaultParsing

            boolean useOptimizedDefaultParsing

      - #### warnedAboutRegexNotMatching

            boolean warnedAboutRegexNotMatching

- ## Package picard.vcf.MendelianViolations

  - ### Class picard.vcf.MendelianViolations.MendelianViolationsByFamily extends htsjdk.samtools.util.CollectionUtil.DefaultingMap<String,​Collection<htsjdk.variant.variantcontext.VariantContext>> implements Serializable