Actual source code: petscviewerhdf5.h
petsc-3.7.7 2017-09-25
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      5: #include <petscviewer.h>

      7: #if defined(PETSC_HAVE_HDF5)

      9: #include <hdf5.h>
     10: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer,hid_t*);
     11: PETSC_EXTERN PetscErrorCode PetscViewerHDF5OpenGroup(PetscViewer, hid_t *, hid_t *);
     12: PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadSizes(PetscViewer, const char[], PetscInt *, PetscInt *);

     14: /* On 32 bit systems HDF5 is limited by size of integer, because hsize_t is defined as size_t */
     15: #define PETSC_HDF5_INT_MAX  2147483647
     16: #define PETSC_HDF5_INT_MIN -2147483647

     20: PETSC_STATIC_INLINE PetscErrorCode PetscHDF5IntCast(PetscInt a,hsize_t *b)
     21: {
     23: #if defined(PETSC_USE_64BIT_INDICES) && (PETSC_SIZEOF_SIZE_T == 4)
     24:   if ((a) > PETSC_HDF5_INT_MAX) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Array too long for HDF5");
     25: #endif
     26:   *b =  (hsize_t)(a);
     27:   return(0);
     28: }
     29: PETSC_EXTERN PetscErrorCode PetscDataTypeToHDF5DataType(PetscDataType,hid_t*);
     30: PETSC_EXTERN PetscErrorCode PetscHDF5DataTypeToPetscDataType(hid_t,PetscDataType*);

     32: #define PetscStackCallHDF5(func,args) do {                        \
     33:     herr_t _status;                                               \
     34:     PetscStackPush(#func);_status = func args;PetscStackPop; if (_status) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)_status); \
     35:   } while (0)

     37: #define PetscStackCallHDF5Return(ret,func,args) do {              \
     38:     PetscStackPush(#func);ret = func args;PetscStackPop; if (ret < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_LIB,"Error in HDF5 call %s() Status %d",#func,(int)ret); \
     39:   } while (0)

     41: #endif  /* defined(PETSC_HAVE_HDF5) */

     43: PETSC_EXTERN PetscErrorCode PetscViewerHDF5ReadAttribute(PetscViewer,const char[],const char[],PetscDataType,void*);
     44: PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteAttribute(PetscViewer,const char[],const char[],PetscDataType,const void*);
     45: PETSC_EXTERN PetscErrorCode PetscViewerHDF5HasAttribute(PetscViewer, const char[], const char[], PetscBool *);
     46: PETSC_EXTERN PetscErrorCode PetscViewerHDF5WriteSDS(PetscViewer,float *,int,int *,int);

     48: PETSC_EXTERN PetscErrorCode PetscViewerHDF5Open(MPI_Comm,const char[],PetscFileMode,PetscViewer*);
     49: PETSC_EXTERN PetscErrorCode PetscViewerHDF5PushGroup(PetscViewer,const char *);
     50: PETSC_EXTERN PetscErrorCode PetscViewerHDF5PopGroup(PetscViewer);
     51: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetGroup(PetscViewer, const char **);
     52: PETSC_EXTERN PetscErrorCode PetscViewerHDF5IncrementTimestep(PetscViewer);
     53: PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetTimestep(PetscViewer,PetscInt);
     54: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetTimestep(PetscViewer,PetscInt*);

     56: PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetBaseDimension2(PetscViewer,PetscBool);
     57: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetBaseDimension2(PetscViewer,PetscBool*);

     59: PETSC_EXTERN PetscErrorCode PetscViewerHDF5SetSPOutput(PetscViewer,PetscBool);
     60: PETSC_EXTERN PetscErrorCode PetscViewerHDF5GetSPOutput(PetscViewer,PetscBool*);

     62: /* Reset __FUNCT__ in case the user does not define it themselves */

     66: #endif