Actual source code: ex5f.F90

      1:       !Solves two linear systems in parallel with KSP.  The code
      2:       !illustrates repeated solution of linear systems with the same preconditioner
      3:       !method but different matrices (having the same nonzero structure).  The code
      4:       !also uses multiple profiling stages.  Input arguments are
      5:       !  -m <size> : problem size
      6:       !  -mat_nonsym : use nonsymmetric matrix (default is symmetric)

      8:       !Concepts: KSP^repeatedly solving linear systems;
      9:       !Concepts: PetscLog^profiling multiple stages of code;
     10:       !Processors: n

     12: program main
     13: #include <petsc/finclude/petscksp.h>
     14:       use petscksp

     16:       implicit none
     17:       KSP            :: ksp            ! linear solver context
     18:       Mat            :: C,Ctmp           ! matrix
     19:       Vec            :: x,u,b            ! approx solution, RHS, exact solution
     20:       PetscReal      :: norm             ! norm of solution error
     21:       PetscScalar    :: v
     22:       PetscScalar, parameter :: myNone = -1.0
     23:       PetscInt       :: Ii,JJ,ldim,low,high,iglobal,Istart,Iend
     24:       PetscErrorCode :: ierr
     25:       PetscInt       :: i,j,its,n
     26:       PetscInt       :: m = 3, orthog = 0
     27:       PetscMPIInt    :: size,rank
     28:       PetscBool :: &
     29:         testnewC         = PETSC_FALSE, &
     30:         testscaledMat    = PETSC_FALSE, &
     31:         mat_nonsymmetric = PETSC_FALSE
     32:       PetscBool      :: flg
     33:       PetscRandom    :: rctx
     34:       PetscLogStage,dimension(0:1) :: stages
     35:       character(len=PETSC_MAX_PATH_LEN) :: outputString
     36:       PetscInt,parameter :: one = 1

     38:       call PetscInitialize(PETSC_NULL_CHARACTER,ierr)
     39:       if (ierr /= 0) then
     40:         write(6,*)'Unable to initialize PETSc'
     41:         stop
     42:       endif

     44:       call PetscOptionsGetInt(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,'-orthog',orthog,flg,ierr)
     45:       CHKERRA(ierr)
     46:       call PetscOptionsGetInt(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,'-m',m,flg,ierr)
     47:       CHKERRA(ierr)
     48:       call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)
     49:       CHKERRA(ierr)
     50:       call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)
     51:       CHKERRA(ierr)
     52:       n=2*size

     55:       ! Set flag if we are doing a nonsymmetric problem; the default is symmetric.

     57:       call PetscOptionsGetBool(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,"-mat_nonsym",mat_nonsymmetric,flg,ierr)
     58:       CHKERRA(ierr)
     59:       call PetscOptionsGetBool(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,"-test_scaledMat",testscaledMat,flg,ierr)
     60:       CHKERRA(ierr)

     62:       ! Register two stages for separate profiling of the two linear solves.
     63:       ! Use the runtime option -log_view for a printout of performance
     64:       ! statistics at the program's conlusion.

     66:       call PetscLogStageRegister("Original Solve",stages(0),ierr)
     67:       CHKERRA(ierr)
     68:       call PetscLogStageRegister("Second Solve",stages(1),ierr)
     69:       CHKERRA(ierr)

     71:       ! -------------- Stage 0: Solve Original System ----------------------
     72:       ! Indicate to PETSc profiling that we're beginning the first stage

     74:       call PetscLogStagePush(stages(0),ierr)
     75:       CHKERRA(ierr)

     77:       ! Create parallel matrix, specifying only its global dimensions.
     78:       ! When using MatCreate(), the matrix format can be specified at
     79:       ! runtime. Also, the parallel partitioning of the matrix is
     80:       ! determined by PETSc at runtime.

     82:       call MatCreate(PETSC_COMM_WORLD,C,ierr)
     83:       CHKERRA(ierr)
     84:       call MatSetSizes(C,PETSC_DECIDE,PETSC_DECIDE,m*n,m*n,ierr)
     85:       CHKERRA(ierr)
     86:       call MatSetFromOptions(C,ierr)
     87:       CHKERRA(ierr)
     88:       call MatSetUp(C,ierr)
     89:       CHKERRA(ierr)

     91:       ! Currently, all PETSc parallel matrix formats are partitioned by
     92:       ! contiguous chunks of rows across the processors.  Determine which
     93:       ! rows of the matrix are locally owned.

     95:       call MatGetOwnershipRange(C,Istart,Iend,ierr)

     97:       ! Set matrix entries matrix in parallel.
     98:       ! - Each processor needs to insert only elements that it owns
     99:       ! locally (but any non-local elements will be sent to the
    100:       ! appropriate processor during matrix assembly).
    101:       !- Always specify global row and columns of matrix entries.

    103:       intitializeC: do Ii=Istart,Iend-1
    104:           v =-1.0; i = Ii/n; j = Ii - i*n
    105:           if (i>0) then
    106:             JJ = Ii - n
    107:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    108:             CHKERRA(ierr)
    109:           endif

    111:           if (i<m-1) then
    112:             JJ = Ii + n
    113:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    114:             CHKERRA(ierr)
    115:           endif

    117:           if (j>0) then
    118:             JJ = Ii - 1
    119:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    120:             CHKERRA(ierr)
    121:           endif

    123:           if (j<n-1) then
    124:             JJ = Ii + 1
    125:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    126:             CHKERRA(ierr)
    127:           endif

    129:           v=4.0
    130:           call MatSetValues(C,one,Ii,one,Ii,v,ADD_VALUES,ierr)
    131:           CHKERRA(ierr)

    133:       enddo intitializeC

    135:       ! Make the matrix nonsymmetric if desired
    136:       if (mat_nonsymmetric) then
    137:         do Ii=Istart,Iend-1
    138:           v=-1.5; i=Ii/n
    139:           if (i>1) then
    140:             JJ=Ii-n-1
    141:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    142:             CHKERRA(ierr)
    143:           endif
    144:         enddo
    145:       else
    146:         call MatSetOption(C,MAT_SYMMETRIC,PETSC_TRUE,ierr)
    147:         CHKERRA(ierr)
    148:         call MatSetOption(C,MAT_SYMMETRY_ETERNAL,PETSC_TRUE,ierr)
    149:         CHKERRA(ierr)
    150:       endif

    152:       ! Assemble matrix, using the 2-step process:
    153:       ! MatAssemblyBegin(), MatAssemblyEnd()
    154:       ! Computations can be done while messages are in transition
    155:       ! by placing code between these two statements.

    157:       call MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY,ierr)
    158:       CHKERRA(ierr)
    159:       call MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY,ierr)
    160:       CHKERRA(ierr)

    162:       ! Create parallel vectors.
    163:       ! - When using VecSetSizes(), we specify only the vector's global
    164:       !   dimension; the parallel partitioning is determined at runtime.
    165:       ! - Note: We form 1 vector from scratch and then duplicate as needed.

    167:       call  VecCreate(PETSC_COMM_WORLD,u,ierr)
    168:       call  VecSetSizes(u,PETSC_DECIDE,m*n,ierr)
    169:       call  VecSetFromOptions(u,ierr)
    170:       call  VecDuplicate(u,b,ierr)
    171:       call  VecDuplicate(b,x,ierr)

    173:       ! Currently, all parallel PETSc vectors are partitioned by
    174:       ! contiguous chunks across the processors.  Determine which
    175:       ! range of entries are locally owned.

    177:       call  VecGetOwnershipRange(x,low,high,ierr)
    178:       CHKERRA(ierr)

    180:       !Set elements within the exact solution vector in parallel.
    181:       ! - Each processor needs to insert only elements that it owns
    182:       ! locally (but any non-local entries will be sent to the
    183:       ! appropriate processor during vector assembly).
    184:       ! - Always specify global locations of vector entries.

    186:       call VecGetLocalSize(x,ldim,ierr)
    187:       CHKERRA(ierr)
    188:       do i=0,ldim-1
    189:         iglobal = i + low
    190:         v = real(i + 100*rank)
    191:         call VecSetValues(u,one,iglobal,v,INSERT_VALUES,ierr)
    192:         CHKERRA(ierr)
    193:       enddo

    195:       ! Assemble vector, using the 2-step process:
    196:       ! VecAssemblyBegin(), VecAssemblyEnd()
    197:       ! Computations can be done while messages are in transition,
    198:       ! by placing code between these two statements.

    200:       call  VecAssemblyBegin(u,ierr)
    201:       CHKERRA(ierr)
    202:       call  VecAssemblyEnd(u,ierr)
    203:       CHKERRA(ierr)

    205:       ! Compute right-hand-side vector

    207:       call  MatMult(C,u,b,ierr)

    209:       CHKERRA(ierr)

    211:       ! Create linear solver context

    213:       call  KSPCreate(PETSC_COMM_WORLD,ksp,ierr)
    214:       CHKERRA(ierr)
    215:       ! Set operators. Here the matrix that defines the linear system
    216:       ! also serves as the preconditioning matrix.

    218:       call  KSPSetOperators(ksp,C,C,ierr)
    219:       CHKERRA(ierr)
    220:       ! Set runtime options (e.g., -ksp_type <type> -pc_type <type>)

    222:       call  KSPSetFromOptions(ksp,ierr)
    223:       CHKERRA(ierr)
    224:       ! Solve linear system.  Here we explicitly call KSPSetUp() for more
    225:       ! detailed performance monitoring of certain preconditioners, such
    226:       ! as ICC and ILU.  This call is optional, as KSPSetUp() will
    227:       ! automatically be called within KSPSolve() if it hasn't been
    228:       ! called already.

    230:       call  KSPSetUp(ksp,ierr)
    231:       CHKERRA(ierr)

    233:       ! Do not do this in application code, use -ksp_gmres_modifiedgramschmidt or -ksp_gmres_modifiedgramschmidt
    234:       if (orthog .eq. 1) then
    235:          call KSPGMRESSetOrthogonalization(ksp,KSPGMRESModifiedGramSchmidtOrthogonalization,ierr)
    236:       else if (orthog .eq. 2) then
    237:          call KSPGMRESSetOrthogonalization(ksp,KSPGMRESClassicalGramSchmidtOrthogonalization,ierr)
    238:       endif
    239:       CHKERRA(ierr)

    241:       call  KSPSolve(ksp,b,x,ierr)
    242:       CHKERRA(ierr)

    244:       ! Check the error

    246:       call VecAXPY(x,myNone,u,ierr)
    247:       call VecNorm(x,NORM_2,norm,ierr)

    249:       call KSPGetIterationNumber(ksp,its,ierr)
    250:       if (.not. testscaledMat .or. norm > 1.e-7) then
    251:         write(outputString,'(a,f11.9,a,i2.2,a)') 'Norm of error ',norm,', Iterations ',its,'\n'
    252:         call PetscPrintf(PETSC_COMM_WORLD,outputString,ierr)
    253:       endif

    255:       ! -------------- Stage 1: Solve Second System ----------------------

    257:       ! Solve another linear system with the same method.  We reuse the KSP
    258:       ! context, matrix and vector data structures, and hence save the
    259:       ! overhead of creating new ones.

    261:       ! Indicate to PETSc profiling that we're concluding the first
    262:       ! stage with PetscLogStagePop(), and beginning the second stage with
    263:       ! PetscLogStagePush().

    265:       call PetscLogStagePop(ierr)
    266:       CHKERRA(ierr)
    267:       call PetscLogStagePush(stages(1),ierr)
    268:       CHKERRA(ierr)

    270:       ! Initialize all matrix entries to zero.  MatZeroEntries() retains the
    271:       ! nonzero structure of the matrix for sparse formats.

    273:       call MatZeroEntries(C,ierr)
    274:       CHKERRA(ierr)

    276:       ! Assemble matrix again.  Note that we retain the same matrix data
    277:       ! structure and the same nonzero pattern; we just change the values
    278:       ! of the matrix entries.

    280:       do i=0,m-1
    281:         do j=2*rank,2*rank+1
    282:           v =-1.0; Ii=j + n*i
    283:           if (i>0) then
    284:             JJ = Ii - n
    285:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    286:             CHKERRA(ierr)
    287:           endif

    289:           if (i<m-1) then
    290:             JJ = Ii + n
    291:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    292:             CHKERRA(ierr)
    293:           endif

    295:           if (j>0) then
    296:             JJ = Ii - 1
    297:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    298:             CHKERRA(ierr)
    299:           endif

    301:           if (j<n-1) then
    302:             JJ = Ii + 1
    303:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    304:             CHKERRA(ierr)
    305:           endif

    307:           v=6.0
    308:           call MatSetValues(C,one,Ii,one,Ii,v,ADD_VALUES,ierr)
    309:           CHKERRA(ierr)

    311:         enddo
    312:       enddo

    314:       ! Make the matrix nonsymmetric if desired

    316:       if (mat_nonsymmetric) then
    317:         do Ii=Istart,Iend-1
    318:           v=-1.5;  i=Ii/n
    319:           if (i>1) then
    320:             JJ=Ii-n-1
    321:             call MatSetValues(C,one,Ii,one,JJ,v,ADD_VALUES,ierr)
    322:             CHKERRA(ierr)
    323:           endif
    324:         enddo
    325:       endif

    327:       ! Assemble matrix, using the 2-step process:
    328:       ! MatAssemblyBegin(), MatAssemblyEnd()
    329:       ! Computations can be done while messages are in transition
    330:       ! by placing code between these two statements.

    332:       call MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY,ierr)
    333:       CHKERRA(ierr)
    334:       call MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY,ierr)
    335:       CHKERRA(ierr)

    337:       if (testscaledMat) then
    338:         ! Scale a(0,0) and a(M-1,M-1)

    340:         if (rank /= 0) then
    341:           v = 6.0*0.00001; Ii = 0; JJ = 0
    342:           call MatSetValues(C,one,Ii,one,JJ,v,INSERT_VALUES,ierr)
    343:           CHKERRA(ierr)
    344:         elseif (rank == size -1) then
    345:           v = 6.0*0.00001; Ii = m*n-1; JJ = m*n-1
    346:           call MatSetValues(C,one,Ii,one,JJ,v,INSERT_VALUES,ierr)

    348:         endif

    350:         call MatAssemblyBegin(C,MAT_FINAL_ASSEMBLY,ierr)
    351:         call MatAssemblyEnd(C,MAT_FINAL_ASSEMBLY,ierr)

    353:         ! Compute a new right-hand-side vector

    355:         call  VecDestroy(u,ierr)
    356:         call  VecCreate(PETSC_COMM_WORLD,u,ierr)
    357:         call  VecSetSizes(u,PETSC_DECIDE,m*n,ierr)
    358:         call  VecSetFromOptions(u,ierr)

    360:         call  PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)
    361:         call  PetscRandomSetFromOptions(rctx,ierr)
    362:         call  VecSetRandom(u,rctx,ierr)
    363:         call  PetscRandomDestroy(rctx,ierr)
    364:         call  VecAssemblyBegin(u,ierr)
    365:         call  VecAssemblyEnd(u,ierr)

    367:       endif

    369:       call PetscOptionsGetBool(PETSC_NULL_OPTIONS,PETSC_NULL_CHARACTER,"-test_newMat",testnewC,flg,ierr)
    370:       CHKERRA(ierr)

    372:       if (testnewC) then
    373:       ! User may use a new matrix C with same nonzero pattern, e.g.
    374:       ! ex5 -ksp_monitor -mat_type sbaij -pc_type cholesky -pc_factor_mat_solver_type mumps -test_newMat

    376:         call  MatDuplicate(C,MAT_COPY_VALUES,Ctmp,ierr)
    377:         call  MatDestroy(C,ierr)
    378:         call  MatDuplicate(Ctmp,MAT_COPY_VALUES,C,ierr)
    379:         call  MatDestroy(Ctmp,ierr)
    380:       endif

    382:       call MatMult(C,u,b,ierr);CHKERRA(ierr)

    384:       ! Set operators. Here the matrix that defines the linear system
    385:       ! also serves as the preconditioning matrix.

    387:       call KSPSetOperators(ksp,C,C,ierr);CHKERRA(ierr)

    389:       ! Solve linear system

    391:       call  KSPSetUp(ksp,ierr); CHKERRA(ierr)
    392:       call  KSPSolve(ksp,b,x,ierr); CHKERRA(ierr)

    394:       ! Check the error

    396:       call VecAXPY(x,myNone,u,ierr); CHKERRA(ierr)
    397:       call VecNorm(x,NORM_2,norm,ierr); CHKERRA(ierr)
    398:       call KSPGetIterationNumber(ksp,its,ierr); CHKERRA(ierr)
    399:       if (.not. testscaledMat .or. norm > 1.e-7) then
    400:         write(outputString,'(a,f11.9,a,i2.2,a)') 'Norm of error ',norm,', Iterations ',its,'\n'
    401:         call PetscPrintf(PETSC_COMM_WORLD,outputString,ierr)
    402:       endif

    404:       ! Free work space.  All PETSc objects should be destroyed when they
    405:       ! are no longer needed.

    407:       call  KSPDestroy(ksp,ierr); CHKERRA(ierr)
    408:       call  VecDestroy(u,ierr); CHKERRA(ierr)
    409:       call  VecDestroy(x,ierr); CHKERRA(ierr)
    410:       call  VecDestroy(b,ierr); CHKERRA(ierr)
    411:       call  MatDestroy(C,ierr); CHKERRA(ierr)

    413:       ! Indicate to PETSc profiling that we're concluding the second stage

    415:       call PetscLogStagePop(ierr)
    416:       CHKERRA(ierr)

    418:       call PetscFinalize(ierr)

    420: !/*TEST
    421: !
    422: !   test:
    423: !      args: -pc_type jacobi -ksp_monitor_short -ksp_gmres_cgs_refinement_type refine_always
    424: !
    425: !   test:
    426: !      suffix: 2
    427: !      nsize: 2
    428: !      args: -pc_type jacobi -ksp_monitor_short -ksp_gmres_cgs_refinement_type refine_always -ksp_rtol .000001
    429: !
    430: !   test:
    431: !      suffix: 5
    432: !      nsize: 2
    433: !      args: -ksp_gmres_cgs_refinement_type refine_always -ksp_monitor draw::draw_lg -ksp_monitor_true_residual draw::draw_lg
    434: !      output_file: output/ex5f_5.out
    435: !
    436: !   test:
    437: !      suffix: asm
    438: !      nsize: 4
    439: !      args: -pc_type asm
    440: !      output_file: output/ex5f_asm.out
    441: !
    442: !   test:
    443: !      suffix: asm_baij
    444: !      nsize: 4
    445: !      args: -pc_type asm -mat_type baij
    446: !      output_file: output/ex5f_asm.out
    447: !
    448: !   test:
    449: !      suffix: redundant_0
    450: !      args: -m 1000 -pc_type redundant -pc_redundant_number 1 -redundant_ksp_type gmres -redundant_pc_type jacobi
    451: !
    452: !   test:
    453: !      suffix: redundant_1
    454: !      nsize: 5
    455: !      args: -pc_type redundant -pc_redundant_number 1 -redundant_ksp_type gmres -redundant_pc_type jacobi
    456: !
    457: !   test:
    458: !      suffix: redundant_2
    459: !      nsize: 5
    460: !      args: -pc_type redundant -pc_redundant_number 3 -redundant_ksp_type gmres -redundant_pc_type jacobi
    461: !
    462: !   test:
    463: !      suffix: redundant_3
    464: !      nsize: 5
    465: !      args: -pc_type redundant -pc_redundant_number 5 -redundant_ksp_type gmres -redundant_pc_type jacobi
    466: !
    467: !   test:
    468: !      suffix: redundant_4
    469: !      nsize: 5
    470: !      args: -pc_type redundant -pc_redundant_number 3 -redundant_ksp_type gmres -redundant_pc_type jacobi -psubcomm_type interlaced
    471: !
    472: !   test:
    473: !      suffix: superlu_dist
    474: !      nsize: 15
    475: !      requires: superlu_dist
    476: !      args: -pc_type lu -pc_factor_mat_solver_type superlu_dist -mat_superlu_dist_equil false -m 150 -mat_superlu_dist_r 3 -mat_superlu_dist_c 5 -test_scaledMat
    477: !
    478: !   test:
    479: !      suffix: superlu_dist_2
    480: !      nsize: 15
    481: !      requires: superlu_dist
    482: !      args: -pc_type lu -pc_factor_mat_solver_type superlu_dist -mat_superlu_dist_equil false -m 150 -mat_superlu_dist_r 3 -mat_superlu_dist_c 5 -test_scaledMat -mat_superlu_dist_fact SamePattern_SameRowPerm
    483: !      output_file: output/ex5f_superlu_dist.out
    484: !
    485: !   test:
    486: !      suffix: superlu_dist_3
    487: !      nsize: 15
    488: !      requires: superlu_dist
    489: !      args: -pc_type lu -pc_factor_mat_solver_type superlu_dist -mat_superlu_dist_equil false -m 500 -mat_superlu_dist_r 3 -mat_superlu_dist_c 5 -test_scaledMat -mat_superlu_dist_fact DOFACT
    490: !      output_file: output/ex5f_superlu_dist.out
    491: !
    492: !   test:
    493: !      suffix: superlu_dist_0
    494: !      nsize: 1
    495: !      requires: superlu_dist
    496: !      args: -pc_type lu -pc_factor_mat_solver_type superlu_dist -test_scaledMat
    497: !      output_file: output/ex5f_superlu_dist.out
    498: !
    499: !   test:
    500: !      suffix: orthog1
    501: !      args: -orthog 1 -ksp_view
    502: !
    503: !   test:
    504: !      suffix: orthog2
    505: !      args: -orthog 2 -ksp_view
    506: !
    507: !TEST*/

    509: end program main