Actual source code: ex1.c

      1: static const char help[] = "Test star forest communication (PetscSF)\n\n";

      3: /*T
      4:     Description: A star is a simple tree with one root and zero or more leaves.
      5:     A star forest is a union of disjoint stars.
      6:     Many common communication patterns can be expressed as updates of rootdata using leafdata and vice-versa.
      7:     This example creates a star forest, communicates values using the graph (see options for types of communication), views the graph, then destroys it.
      8: T*/

     10: /*
     11:   Include petscsf.h so we can use PetscSF objects. Note that this automatically
     12:   includes petscsys.h.
     13: */
     14: #include <petscsf.h>
     15: #include <petscviewer.h>

     17: /* like PetscSFView() but with alternative array of local indices */
     18: static PetscErrorCode PetscSFViewCustomLocals_Private(PetscSF sf,const PetscInt locals[],PetscViewer viewer)
     19: {
     20:   const PetscSFNode *iremote;
     21:   PetscInt          i,nroots,nleaves,nranks;
     22:   PetscMPIInt       rank;
     23:   PetscErrorCode    ierr;

     26:   MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);
     27:   PetscSFGetGraph(sf,&nroots,&nleaves,NULL,&iremote);
     28:   PetscSFGetRootRanks(sf,&nranks,NULL,NULL,NULL,NULL);
     29:   PetscViewerASCIIPushTab(viewer);
     30:   PetscViewerASCIIPushSynchronized(viewer);
     31:   PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,nroots,nleaves,nranks);
     32:   for (i=0; i<nleaves; i++) {
     33:     PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,locals[i],iremote[i].rank,iremote[i].index);
     34:   }
     35:   PetscViewerFlush(viewer);
     36:   PetscViewerASCIIPopTab(viewer);
     37:   PetscViewerASCIIPopSynchronized(viewer);
     38:   return(0);
     39: }

     41: int main(int argc,char **argv)
     42: {
     44:   PetscInt       i,nroots,nrootsalloc,nleaves,nleavesalloc,*mine,stride;
     45:   PetscSFNode    *remote;
     46:   PetscMPIInt    rank,size;
     47:   PetscSF        sf;
     48:   PetscBool      test_all,test_bcast,test_bcastop,test_reduce,test_degree,test_fetchandop,test_gather,test_scatter,test_embed,test_invert,test_sf_distribute,test_char;
     49:   MPI_Op         mop=MPI_OP_NULL; /* initialize to prevent compiler warnings with cxx_quad build */
     50:   char           opstring[256];
     51:   PetscBool      strflg;

     53:   PetscInitialize(&argc,&argv,(char*)0,help);if (ierr) return ierr;
     54:   MPI_Comm_rank(PETSC_COMM_WORLD,&rank);
     55:   MPI_Comm_size(PETSC_COMM_WORLD,&size);

     57:   PetscOptionsBegin(PETSC_COMM_WORLD,"","PetscSF Test Options","none");
     58:   test_all        = PETSC_FALSE;
     59:   PetscOptionsBool("-test_all","Test all SF communications","",test_all,&test_all,NULL);
     60:   test_bcast      = test_all;
     61:   PetscOptionsBool("-test_bcast","Test broadcast","",test_bcast,&test_bcast,NULL);
     62:   test_bcastop    = test_all;
     63:   PetscOptionsBool("-test_bcastop","Test broadcast and reduce","",test_bcastop,&test_bcastop,NULL);
     64:   test_reduce     = test_all;
     65:   PetscOptionsBool("-test_reduce","Test reduction","",test_reduce,&test_reduce,NULL);
     66:   test_char       = test_all;
     67:   PetscOptionsBool("-test_char","Test signed char, unsigned char, and char","",test_char,&test_char,NULL);
     68:   mop             = MPI_SUM;
     69:   PetscStrcpy(opstring,"sum");
     70:   PetscOptionsString("-test_op","Designate which MPI_Op to use","",opstring,opstring,sizeof(opstring),NULL);
     71:   PetscStrcmp("sum",opstring,&strflg);
     72:   if (strflg) {
     73:     mop = MPIU_SUM;
     74:   }
     75:   PetscStrcmp("prod",opstring,&strflg);
     76:   if (strflg) {
     77:     mop = MPI_PROD;
     78:   }
     79:   PetscStrcmp("max",opstring,&strflg);
     80:   if (strflg) {
     81:     mop = MPI_MAX;
     82:   }
     83:   PetscStrcmp("min",opstring,&strflg);
     84:   if (strflg) {
     85:     mop = MPI_MIN;
     86:   }
     87:   PetscStrcmp("land",opstring,&strflg);
     88:   if (strflg) {
     89:     mop = MPI_LAND;
     90:   }
     91:   PetscStrcmp("band",opstring,&strflg);
     92:   if (strflg) {
     93:     mop = MPI_BAND;
     94:   }
     95:   PetscStrcmp("lor",opstring,&strflg);
     96:   if (strflg) {
     97:     mop = MPI_LOR;
     98:   }
     99:   PetscStrcmp("bor",opstring,&strflg);
    100:   if (strflg) {
    101:     mop = MPI_BOR;
    102:   }
    103:   PetscStrcmp("lxor",opstring,&strflg);
    104:   if (strflg) {
    105:     mop = MPI_LXOR;
    106:   }
    107:   PetscStrcmp("bxor",opstring,&strflg);
    108:   if (strflg) {
    109:     mop = MPI_BXOR;
    110:   }
    111:   test_degree     = test_all;
    112:   PetscOptionsBool("-test_degree","Test computation of vertex degree","",test_degree,&test_degree,NULL);
    113:   test_fetchandop = test_all;
    114:   PetscOptionsBool("-test_fetchandop","Test atomic Fetch-And-Op","",test_fetchandop,&test_fetchandop,NULL);
    115:   test_gather     = test_all;
    116:   PetscOptionsBool("-test_gather","Test point gather","",test_gather,&test_gather,NULL);
    117:   test_scatter    = test_all;
    118:   PetscOptionsBool("-test_scatter","Test point scatter","",test_scatter,&test_scatter,NULL);
    119:   test_embed      = test_all;
    120:   PetscOptionsBool("-test_embed","Test point embed","",test_embed,&test_embed,NULL);
    121:   test_invert     = test_all;
    122:   PetscOptionsBool("-test_invert","Test point invert","",test_invert,&test_invert,NULL);
    123:   stride          = 1;
    124:   PetscOptionsInt("-stride","Stride for leaf and root data","",stride,&stride,NULL);
    125:   test_sf_distribute = PETSC_FALSE;
    126:   PetscOptionsBool("-test_sf_distribute","Create an SF that 'distributes' to each process, like an alltoall","",test_sf_distribute,&test_sf_distribute,NULL);
    127:   PetscOptionsString("-test_op","Designate which MPI_Op to use","",opstring,opstring,sizeof(opstring),NULL);
    128:   PetscOptionsEnd();

    130:   if (test_sf_distribute) {
    131:     nroots = size;
    132:     nrootsalloc = size;
    133:     nleaves = size;
    134:     nleavesalloc = size;
    135:     mine = NULL;
    136:     PetscMalloc1(nleaves,&remote);
    137:     for (i=0; i<size; i++) {
    138:       remote[i].rank = i;
    139:       remote[i].index = rank;
    140:     }
    141:   } else {
    142:     nroots       = 2 + (PetscInt)(rank == 0);
    143:     nrootsalloc  = nroots * stride;
    144:     nleaves      = 2 + (PetscInt)(rank > 0);
    145:     nleavesalloc = nleaves * stride;
    146:     mine         = NULL;
    147:     if (stride > 1) {
    148:       PetscInt i;

    150:       PetscMalloc1(nleaves,&mine);
    151:       for (i = 0; i < nleaves; i++) {
    152:         mine[i] = stride * i;
    153:       }
    154:     }
    155:     PetscMalloc1(nleaves,&remote);
    156:     /* Left periodic neighbor */
    157:     remote[0].rank  = (rank+size-1)%size;
    158:     remote[0].index = 1 * stride;
    159:     /* Right periodic neighbor */
    160:     remote[1].rank  = (rank+1)%size;
    161:     remote[1].index = 0 * stride;
    162:     if (rank > 0) {               /* All processes reference rank 0, index 1 */
    163:       remote[2].rank  = 0;
    164:       remote[2].index = 2 * stride;
    165:     }
    166:   }

    168:   /* Create a star forest for communication. In this example, the leaf space is dense, so we pass NULL. */
    169:   PetscSFCreate(PETSC_COMM_WORLD,&sf);
    170:   PetscSFSetFromOptions(sf);
    171:   PetscSFSetGraph(sf,nrootsalloc,nleaves,mine,PETSC_OWN_POINTER,remote,PETSC_OWN_POINTER);
    172:   PetscSFSetUp(sf);

    174:   /* View graph, mostly useful for debugging purposes. */
    175:   PetscViewerPushFormat(PETSC_VIEWER_STDOUT_WORLD,PETSC_VIEWER_ASCII_INFO_DETAIL);
    176:   PetscSFView(sf,PETSC_VIEWER_STDOUT_WORLD);
    177:   PetscViewerPopFormat(PETSC_VIEWER_STDOUT_WORLD);

    179:   if (test_bcast) {             /* broadcast rootdata into leafdata */
    180:     PetscInt *rootdata,*leafdata;
    181:     /* Allocate space for send and receive buffers. This example communicates PetscInt, but other types, including
    182:      * user-defined structures, could also be used. */
    183:     PetscMalloc2(nrootsalloc,&rootdata,nleavesalloc,&leafdata);
    184:     /* Set rootdata buffer to be broadcast */
    185:     for (i=0; i<nrootsalloc; i++) rootdata[i] = -1;
    186:     for (i=0; i<nroots; i++) rootdata[i*stride] = 100*(rank+1) + i;
    187:     /* Initialize local buffer, these values are never used. */
    188:     for (i=0; i<nleavesalloc; i++) leafdata[i] = -1;
    189:     /* Broadcast entries from rootdata to leafdata. Computation or other communication can be performed between the begin and end calls. */
    190:     PetscSFBcastBegin(sf,MPIU_INT,rootdata,leafdata,MPI_REPLACE);
    191:     PetscSFBcastEnd(sf,MPIU_INT,rootdata,leafdata,MPI_REPLACE);
    192:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Bcast Rootdata\n");
    193:     PetscIntView(nrootsalloc,rootdata,PETSC_VIEWER_STDOUT_WORLD);
    194:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Bcast Leafdata\n");
    195:     PetscIntView(nleavesalloc,leafdata,PETSC_VIEWER_STDOUT_WORLD);
    196:     PetscFree2(rootdata,leafdata);
    197:   }

    199:   if (test_bcast && test_char) { /* Bcast with char */
    200:     PetscInt len;
    201:     char buf[256];
    202:     char *rootdata,*leafdata;
    203:     PetscMalloc2(nrootsalloc,&rootdata,nleavesalloc,&leafdata);
    204:     /* Set rootdata buffer to be broadcast */
    205:     for (i=0; i<nrootsalloc; i++) rootdata[i] = '*';
    206:     for (i=0; i<nroots; i++) rootdata[i*stride] = 'A' + rank*3 + i; /* rank is very small, so it is fine to compute a char */
    207:     /* Initialize local buffer, these values are never used. */
    208:     for (i=0; i<nleavesalloc; i++) leafdata[i] = '?';

    210:     PetscSFBcastBegin(sf,MPI_CHAR,rootdata,leafdata,MPI_REPLACE);
    211:     PetscSFBcastEnd(sf,MPI_CHAR,rootdata,leafdata,MPI_REPLACE);

    213:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Bcast Rootdata in type of char\n");
    214:     len  = 0; PetscSNPrintf(buf,256,"%4d:",rank); len += 5;
    215:     for (i=0; i<nrootsalloc; i++) {PetscSNPrintf(buf+len,256-len,"%5c",rootdata[i]); len += 5;}
    216:     PetscSynchronizedPrintf(PETSC_COMM_WORLD,"%s\n",buf);
    217:     PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);

    219:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Bcast Leafdata in type of char\n");
    220:     len = 0; PetscSNPrintf(buf,256,"%4d:",rank); len += 5;
    221:     for (i=0; i<nleavesalloc; i++) {PetscSNPrintf(buf+len,256-len,"%5c",leafdata[i]); len += 5;}
    222:     PetscSynchronizedPrintf(PETSC_COMM_WORLD,"%s\n",buf);
    223:     PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);

    225:     PetscFree2(rootdata,leafdata);
    226:   }

    228:   if (test_bcastop) {         /* Reduce rootdata into leafdata */
    229:     PetscInt *rootdata,*leafdata;
    230:     /* Allocate space for send and receive buffers. This example communicates PetscInt, but other types, including
    231:      * user-defined structures, could also be used. */
    232:     PetscMalloc2(nrootsalloc,&rootdata,nleavesalloc,&leafdata);
    233:     /* Set rootdata buffer to be broadcast */
    234:     for (i=0; i<nrootsalloc; i++) rootdata[i] = -1;
    235:     for (i=0; i<nroots; i++) rootdata[i*stride] = 100*(rank+1) + i;
    236:     /* Set leaf values to reduce with */
    237:     for (i=0; i<nleavesalloc; i++) leafdata[i] = -10*(rank+1) - i;
    238:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Pre-BcastAndOp Leafdata\n");
    239:     PetscIntView(nleavesalloc,leafdata,PETSC_VIEWER_STDOUT_WORLD);
    240:     /* Broadcast entries from rootdata to leafdata. Computation or other communication can be performed between the begin and end calls. */
    241:     PetscSFBcastBegin(sf,MPIU_INT,rootdata,leafdata,mop);
    242:     PetscSFBcastEnd(sf,MPIU_INT,rootdata,leafdata,mop);
    243:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## BcastAndOp Rootdata\n");
    244:     PetscIntView(nrootsalloc,rootdata,PETSC_VIEWER_STDOUT_WORLD);
    245:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## BcastAndOp Leafdata\n");
    246:     PetscIntView(nleavesalloc,leafdata,PETSC_VIEWER_STDOUT_WORLD);
    247:     PetscFree2(rootdata,leafdata);
    248:   }

    250:   if (test_reduce) {            /* Reduce leafdata into rootdata */
    251:     PetscInt *rootdata,*leafdata;
    252:     PetscMalloc2(nrootsalloc,&rootdata,nleavesalloc,&leafdata);
    253:     /* Initialize rootdata buffer in which the result of the reduction will appear. */
    254:     for (i=0; i<nrootsalloc; i++) rootdata[i] = -1;
    255:     for (i=0; i<nroots; i++) rootdata[i*stride] = 100*(rank+1) + i;
    256:     /* Set leaf values to reduce. */
    257:     for (i=0; i<nleavesalloc; i++) leafdata[i] = -1;
    258:     for (i=0; i<nleaves; i++) leafdata[i*stride] = 1000*(rank+1) + 10*i;
    259:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Pre-Reduce Rootdata\n");
    260:     PetscIntView(nrootsalloc,rootdata,PETSC_VIEWER_STDOUT_WORLD);
    261:     /* Perform reduction. Computation or other communication can be performed between the begin and end calls.
    262:      * This example sums the values, but other MPI_Ops can be used (e.g MPI_MAX, MPI_PROD). */
    263:     PetscSFReduceBegin(sf,MPIU_INT,leafdata,rootdata,mop);
    264:     PetscSFReduceEnd(sf,MPIU_INT,leafdata,rootdata,mop);
    265:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Reduce Leafdata\n");
    266:     PetscIntView(nleavesalloc,leafdata,PETSC_VIEWER_STDOUT_WORLD);
    267:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Reduce Rootdata\n");
    268:     PetscIntView(nrootsalloc,rootdata,PETSC_VIEWER_STDOUT_WORLD);
    269:     PetscFree2(rootdata,leafdata);
    270:   }

    272:   if (test_reduce && test_char) { /* Reduce with signed char */
    273:     PetscInt len;
    274:     char buf[256];
    275:     signed char *rootdata,*leafdata;
    276:     PetscMalloc2(nrootsalloc,&rootdata,nleavesalloc,&leafdata);
    277:     /* Initialize rootdata buffer in which the result of the reduction will appear. */
    278:     for (i=0; i<nrootsalloc; i++) rootdata[i] = -1;
    279:     for (i=0; i<nroots; i++) rootdata[i*stride] = 10*(rank+1) + i;
    280:     /* Set leaf values to reduce. */
    281:     for (i=0; i<nleavesalloc; i++) leafdata[i] = -1;
    282:     for (i=0; i<nleaves; i++) leafdata[i*stride] = 50*(rank+1) + 10*i;
    283:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Pre-Reduce Rootdata in type of signed char\n");

    285:     len = 0; PetscSNPrintf(buf,256,"%4d:",rank); len += 5;
    286:     for (i=0; i<nrootsalloc; i++) {PetscSNPrintf(buf+len,256-len,"%5d",rootdata[i]); len += 5;}
    287:     PetscSynchronizedPrintf(PETSC_COMM_WORLD,"%s\n",buf);
    288:     PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);

    290:     /* Using MPI_CHAR should trigger an error since MPI standard does not support reduction on MPI_CHAR.
    291:        Testing with -test_op max, one can see the sign does take effect in MPI_MAX.
    292:      */
    293:     PetscSFReduceBegin(sf,MPI_SIGNED_CHAR,leafdata,rootdata,mop);
    294:     PetscSFReduceEnd(sf,MPI_SIGNED_CHAR,leafdata,rootdata,mop);

    296:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Reduce Leafdata in type of signed char\n");
    297:     len  = 0; PetscSNPrintf(buf,256,"%4d:",rank); len += 5;
    298:     for (i=0; i<nleavesalloc; i++) {PetscSNPrintf(buf+len,256-len,"%5d",leafdata[i]); len += 5;}
    299:     PetscSynchronizedPrintf(PETSC_COMM_WORLD,"%s\n",buf);
    300:     PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);

    302:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Reduce Rootdata in type of signed char\n");
    303:     len = 0; PetscSNPrintf(buf,256,"%4d:",rank); len += 5;
    304:     for (i=0; i<nrootsalloc; i++) {PetscSNPrintf(buf+len,256-len,"%5d",rootdata[i]); len += 5;}
    305:     PetscSynchronizedPrintf(PETSC_COMM_WORLD,"%s\n",buf);
    306:     PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);

    308:     PetscFree2(rootdata,leafdata);
    309:   }

    311:   if (test_reduce && test_char) { /* Reduce with unsigned char */
    312:     PetscInt len;
    313:     char buf[256];
    314:     unsigned char *rootdata,*leafdata;
    315:     PetscMalloc2(nrootsalloc,&rootdata,nleavesalloc,&leafdata);
    316:     /* Initialize rootdata buffer in which the result of the reduction will appear. */
    317:     for (i=0; i<nrootsalloc; i++) rootdata[i] = -1;
    318:     for (i=0; i<nroots; i++) rootdata[i*stride] = 10*(rank+1) + i;
    319:     /* Set leaf values to reduce. */
    320:     for (i=0; i<nleavesalloc; i++) leafdata[i] = -1;
    321:     for (i=0; i<nleaves; i++) leafdata[i*stride] = 50*(rank+1) + 10*i;
    322:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Pre-Reduce Rootdata in type of unsigned char\n");

    324:     len = 0; PetscSNPrintf(buf,256,"%4d:",rank); len += 5;
    325:     for (i=0; i<nrootsalloc; i++) {PetscSNPrintf(buf+len,256-len,"%5u",rootdata[i]); len += 5;}
    326:     PetscSynchronizedPrintf(PETSC_COMM_WORLD,"%s\n",buf);
    327:     PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);

    329:     /* Using MPI_CHAR should trigger an error since MPI standard does not support reduction on MPI_CHAR.
    330:        Testing with -test_op max, one can see the sign does take effect in MPI_MAX.
    331:      */
    332:     PetscSFReduceBegin(sf,MPI_UNSIGNED_CHAR,leafdata,rootdata,mop);
    333:     PetscSFReduceEnd(sf,MPI_UNSIGNED_CHAR,leafdata,rootdata,mop);

    335:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Reduce Leafdata in type of unsigned char\n");
    336:     len  = 0; PetscSNPrintf(buf,256,"%4d:",rank); len += 5;
    337:     for (i=0; i<nleavesalloc; i++) {PetscSNPrintf(buf+len,256-len,"%5u",leafdata[i]); len += 5;}
    338:     PetscSynchronizedPrintf(PETSC_COMM_WORLD,"%s\n",buf);
    339:     PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);

    341:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Reduce Rootdata in type of unsigned char\n");
    342:     len = 0; PetscSNPrintf(buf,256,"%4d:",rank); len += 5;
    343:     for (i=0; i<nrootsalloc; i++) {PetscSNPrintf(buf+len,256-len,"%5u",rootdata[i]); len += 5;}
    344:     PetscSynchronizedPrintf(PETSC_COMM_WORLD,"%s\n",buf);
    345:     PetscSynchronizedFlush(PETSC_COMM_WORLD,PETSC_STDOUT);

    347:     PetscFree2(rootdata,leafdata);
    348:   }

    350:   if (test_degree) {
    351:     const PetscInt *degree;
    352:     PetscSFComputeDegreeBegin(sf,&degree);
    353:     PetscSFComputeDegreeEnd(sf,&degree);
    354:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Root degrees\n");
    355:     PetscIntView(nrootsalloc,degree,PETSC_VIEWER_STDOUT_WORLD);
    356:   }

    358:   if (test_fetchandop) {
    359:     /* Cannot use text compare here because token ordering is not deterministic */
    360:     PetscInt *leafdata,*leafupdate,*rootdata;
    361:     PetscMalloc3(nleavesalloc,&leafdata,nleavesalloc,&leafupdate,nrootsalloc,&rootdata);
    362:     for (i=0; i<nleavesalloc; i++) leafdata[i] = -1;
    363:     for (i=0; i<nleaves; i++) leafdata[i*stride] = 1;
    364:     for (i=0; i<nrootsalloc; i++) rootdata[i] = -1;
    365:     for (i=0; i<nroots; i++) rootdata[i*stride] = 0;
    366:     PetscSFFetchAndOpBegin(sf,MPIU_INT,rootdata,leafdata,leafupdate,mop);
    367:     PetscSFFetchAndOpEnd(sf,MPIU_INT,rootdata,leafdata,leafupdate,mop);
    368:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Rootdata (sum of 1 from each leaf)\n");
    369:     PetscIntView(nrootsalloc,rootdata,PETSC_VIEWER_STDOUT_WORLD);
    370:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Leafupdate (value at roots prior to my atomic update)\n");
    371:     PetscIntView(nleavesalloc,leafupdate,PETSC_VIEWER_STDOUT_WORLD);
    372:     PetscFree3(leafdata,leafupdate,rootdata);
    373:   }

    375:   if (test_gather) {
    376:     const PetscInt *degree;
    377:     PetscInt       inedges,*indata,*outdata;
    378:     PetscSFComputeDegreeBegin(sf,&degree);
    379:     PetscSFComputeDegreeEnd(sf,&degree);
    380:     for (i=0,inedges=0; i<nrootsalloc; i++) inedges += degree[i];
    381:     PetscMalloc2(inedges,&indata,nleavesalloc,&outdata);
    382:     for (i=0; i<nleavesalloc; i++) outdata[i] = -1;
    383:     for (i=0; i<nleaves; i++) outdata[i*stride] = 1000*(rank+1) + i;
    384:     PetscSFGatherBegin(sf,MPIU_INT,outdata,indata);
    385:     PetscSFGatherEnd(sf,MPIU_INT,outdata,indata);
    386:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Gathered data at multi-roots from leaves\n");
    387:     PetscIntView(inedges,indata,PETSC_VIEWER_STDOUT_WORLD);
    388:     PetscFree2(indata,outdata);
    389:   }

    391:   if (test_scatter) {
    392:     const PetscInt *degree;
    393:     PetscInt       j,count,inedges,*indata,*outdata;
    394:     PetscSFComputeDegreeBegin(sf,&degree);
    395:     PetscSFComputeDegreeEnd(sf,&degree);
    396:     for (i=0,inedges=0; i<nrootsalloc; i++) inedges += degree[i];
    397:     PetscMalloc2(inedges,&indata,nleavesalloc,&outdata);
    398:     for (i=0; i<nleavesalloc; i++) outdata[i] = -1;
    399:     for (i=0,count=0; i<nrootsalloc; i++) {
    400:       for (j=0; j<degree[i]; j++) indata[count++] = 1000*(rank+1) + 100*i + j;
    401:     }
    402:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Data at multi-roots, to scatter to leaves\n");
    403:     PetscIntView(inedges,indata,PETSC_VIEWER_STDOUT_WORLD);

    405:     PetscSFScatterBegin(sf,MPIU_INT,indata,outdata);
    406:     PetscSFScatterEnd(sf,MPIU_INT,indata,outdata);
    407:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Scattered data at leaves\n");
    408:     PetscIntView(nleavesalloc,outdata,PETSC_VIEWER_STDOUT_WORLD);
    409:     PetscFree2(indata,outdata);
    410:   }

    412:   if (test_embed) {
    413:     const PetscInt nroots = 1 + (PetscInt) !rank;
    414:     PetscInt       selected[2];
    415:     PetscSF        esf;

    417:     selected[0] = stride;
    418:     selected[1] = 2*stride;
    419:     PetscSFCreateEmbeddedRootSF(sf,nroots,selected,&esf);
    420:     PetscSFSetUp(esf);
    421:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Embedded PetscSF\n");
    422:     PetscViewerPushFormat(PETSC_VIEWER_STDOUT_WORLD,PETSC_VIEWER_ASCII_INFO_DETAIL);
    423:     PetscSFView(esf,PETSC_VIEWER_STDOUT_WORLD);
    424:     PetscViewerPopFormat(PETSC_VIEWER_STDOUT_WORLD);
    425:     PetscSFDestroy(&esf);
    426:   }

    428:   if (test_invert) {
    429:     const PetscInt *degree;
    430:     PetscInt *mRootsOrigNumbering;
    431:     PetscInt inedges;
    432:     PetscSF msf,imsf;

    434:     PetscSFGetMultiSF(sf,&msf);
    435:     PetscSFCreateInverseSF(msf,&imsf);
    436:     PetscSFSetUp(msf);
    437:     PetscSFSetUp(imsf);
    438:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Multi-SF\n");
    439:     PetscSFView(msf,PETSC_VIEWER_STDOUT_WORLD);
    440:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Multi-SF roots indices in original SF roots numbering\n");
    441:     PetscSFComputeDegreeBegin(sf,&degree);
    442:     PetscSFComputeDegreeEnd(sf,&degree);
    443:     PetscSFComputeMultiRootOriginalNumbering(sf,degree,&inedges,&mRootsOrigNumbering);
    444:     PetscIntView(inedges,mRootsOrigNumbering,PETSC_VIEWER_STDOUT_WORLD);
    445:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Inverse of Multi-SF\n");
    446:     PetscSFView(imsf,PETSC_VIEWER_STDOUT_WORLD);
    447:     PetscViewerASCIIPrintf(PETSC_VIEWER_STDOUT_WORLD,"## Inverse of Multi-SF, original numbering\n");
    448:     PetscSFViewCustomLocals_Private(imsf,mRootsOrigNumbering,PETSC_VIEWER_STDOUT_WORLD);
    449:     PetscSFDestroy(&imsf);
    450:     PetscFree(mRootsOrigNumbering);
    451:   }

    453:   /* Clean storage for star forest. */
    454:   PetscSFDestroy(&sf);
    455:   PetscFinalize();
    456:   return ierr;
    457: }

    459: /*TEST

    461:    test:
    462:       nsize: 4
    463:       filter: grep -v "type" | grep -v "sort"
    464:       args: -test_bcast -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}}
    465:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    468:    test:
    469:       suffix: 2
    470:       nsize: 4
    471:       filter: grep -v "type" | grep -v "sort"
    472:       args: -test_reduce -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}}
    473:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    475:    test:
    476:       suffix: 2_basic
    477:       nsize: 4
    478:       args: -test_reduce -sf_type basic

    480:    test:
    481:       suffix: 3
    482:       nsize: 4
    483:       filter: grep -v "type" | grep -v "sort"
    484:       args: -test_degree -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}}
    485:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    487:    test:
    488:       suffix: 3_basic
    489:       nsize: 4
    490:       args: -test_degree -sf_type basic

    492:    test:
    493:       suffix: 4
    494:       nsize: 4
    495:       filter: grep -v "type" | grep -v "sort"
    496:       args: -test_gather -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}}
    497:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    499:    test:
    500:       suffix: 4_basic
    501:       nsize: 4
    502:       args: -test_gather -sf_type basic

    504:    test:
    505:       suffix: 4_stride
    506:       nsize: 4
    507:       args: -test_gather -sf_type basic -stride 2

    509:    test:
    510:       suffix: 5
    511:       nsize: 4
    512:       filter: grep -v "type" | grep -v "sort"
    513:       args: -test_scatter -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}}
    514:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    516:    test:
    517:       suffix: 5_basic
    518:       nsize: 4
    519:       args: -test_scatter -sf_type basic

    521:    test:
    522:       suffix: 5_stride
    523:       nsize: 4
    524:       args: -test_scatter -sf_type basic -stride 2

    526:    test:
    527:       suffix: 6
    528:       nsize: 4
    529:       filter: grep -v "type" | grep -v "sort"
    530:       # No -sf_window_flavor dynamic due to bug https://gitlab.com/petsc/petsc/issues/555
    531:       args: -test_embed -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create allocate}}
    532:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    534:    test:
    535:       suffix: 6_basic
    536:       nsize: 4
    537:       args: -test_embed -sf_type basic

    539:    test:
    540:       suffix: 7
    541:       nsize: 4
    542:       filter: grep -v "type" | grep -v "sort"
    543:       args: -test_invert -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}}
    544:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    546:    test:
    547:       suffix: 7_basic
    548:       nsize: 4
    549:       args: -test_invert -sf_type basic

    551:    test:
    552:       suffix: basic
    553:       nsize: 4
    554:       args: -test_bcast -sf_type basic
    555:       output_file: output/ex1_1_basic.out

    557:    test:
    558:       suffix: bcastop_basic
    559:       nsize: 4
    560:       args: -test_bcastop -sf_type basic
    561:       output_file: output/ex1_bcastop_basic.out

    563:    test:
    564:       suffix: 8
    565:       nsize: 3
    566:       filter: grep -v "type" | grep -v "sort"
    567:       args: -test_bcast -test_sf_distribute -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create dynamic allocate}}
    568:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    570:    test:
    571:       suffix: 8_basic
    572:       nsize: 3
    573:       args: -test_bcast -test_sf_distribute -sf_type basic

    575:    test:
    576:       suffix: 9_char
    577:       nsize: 4
    578:       args: -sf_type basic -test_bcast -test_reduce -test_op max -test_char

    580:    # Here we do not test -sf_window_flavor dynamic since it is designed for repeated SFs with few different rootdata pointers
    581:    test:
    582:       suffix: 10
    583:       filter: grep -v "type" | grep -v "sort"
    584:       nsize: 4
    585:       args: -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor {{create allocate}} -test_all -test_bcastop 0 -test_fetchandop 0
    586:       requires: define(PETSC_HAVE_MPI_ONE_SIDED)

    588:    # The nightly test suite with MPICH uses ch3:sock, which is broken when winsize == 0 in some of the processes
    589:    test:
    590:       suffix: 10_shared
    591:       output_file: output/ex1_10.out
    592:       filter: grep -v "type" | grep -v "sort"
    593:       nsize: 4
    594:       args: -sf_type window -sf_window_sync {{fence active lock}} -sf_window_flavor shared -test_all -test_bcastop 0 -test_fetchandop 0
    595:       requires: define(PETSC_HAVE_MPI_PROCESS_SHARED_MEMORY) !define(PETSC_HAVE_MPICH_NUMVERSION) define(PETSC_HAVE_MPI_ONE_SIDED)

    597:    test:
    598:       suffix: 10_basic
    599:       nsize: 4
    600:       args: -sf_type basic -test_all -test_bcastop 0 -test_fetchandop 0

    602: TEST*/