pbalign package
===============

Subpackages
-----------

.. toctree::

    pbalign.alignservice
    pbalign.tasks
    pbalign.tools
    pbalign.utils

Submodules
----------

pbalign.bampostservice module
-----------------------------

.. automodule:: pbalign.bampostservice
    :members:
    :undoc-members:
    :show-inheritance:

pbalign.ccs module
------------------

.. automodule:: pbalign.ccs
    :members:
    :undoc-members:
    :show-inheritance:

pbalign.filterservice module
----------------------------

.. automodule:: pbalign.filterservice
    :members:
    :undoc-members:
    :show-inheritance:

pbalign.options module
----------------------

.. automodule:: pbalign.options
    :members:
    :undoc-members:
    :show-inheritance:

pbalign.pbalignfiles module
---------------------------

.. automodule:: pbalign.pbalignfiles
    :members:
    :undoc-members:
    :show-inheritance:

pbalign.pbalignrunner module
----------------------------

.. automodule:: pbalign.pbalignrunner
    :members:
    :undoc-members:
    :show-inheritance:

pbalign.service module
----------------------

.. automodule:: pbalign.service
    :members:
    :undoc-members:
    :show-inheritance:


Module contents
---------------

.. automodule:: pbalign
    :members:
    :undoc-members:
    :show-inheritance:
