Package: parsnp
Version: 2.1.3+dfsg-1build1
Architecture: amd64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1900
Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 14), python3:any, python3-biopython, python3-numpy, python3-pyspoa, python3-tqdm, fasttree, harvest-tools, mummer, phipack, python3, raxml, time
Recommends: python3-dendropy
Section: science
Priority: optional
Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
 Parsnp was designed to align the core genome of hundreds to thousands of
 bacterial genomes within a few minutes to few hours. Input can be both
 draft assemblies and finished genomes, and output includes variant (SNP)
 calls, core genome phylogeny and multi-alignments. Parsnp leverages
 contextual information provided by multi-alignments surrounding SNP
 sites for filtration/cleaning, in addition to existing tools for
 recombination detection/filtration and phylogenetic reconstruction.
