Package: parsnp
Version: 1.2+dfsg-3
Architecture: i386
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 924
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libmuscle-3.7-1, libstdc++6 (>= 5.2), python:any (>= 2.7), python-numpy, fasttree, mummer, phipack
Recommends: python-dendropy
Section: science
Priority: optional
Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
 Parsnp was designed to align the core genome of hundreds to thousands of
 bacterial genomes within a few minutes to few hours. Input can be both
 draft assemblies and finished genomes, and output includes variant (SNP)
 calls, core genome phylogeny and multi-alignments. Parsnp leverages
 contextual information provided by multi-alignments surrounding SNP
 sites for filtration/cleaning, in addition to existing tools for
 recombination detection/filtration and phylogenetic reconstruction.
