Package: pal2nal
Version: 14.1-3
Architecture: all
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 91
Recommends: paml
Section: science
Priority: optional
Homepage: http://www.bork.embl.de/pal2nal
Description: converts proteins to genomic DNA alignment
 PAL2NAL is a program that converts a multiple sequence alignment
 of proteins and the corresponding DNA (or mRNA) sequences into
 a codon-based DNA alignment. The program automatically assigns
 the corresponding codon sequence even if the input DNA sequence
 has mismatches with the input protein sequence, or contains UTRs,
 polyA tails. It can also deal with frame shifts in the input
 alignment, which is suitable for the analysis of pseudogenes.
 The resulting codon-based DNA alignment can further be subjected
 to the calculation of synonymous (Ks) and non-synonymous (Ka)
 substitution rates.
