Package: python3-pairtools
Source: pairtools
Version: 1.1.3-1build1
Architecture: arm64
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 921
Depends: python3-standard-pipes, libc6 (>= 2.17), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11), python3 (<< 3.14), python3 (>= 3.13~), python3-bioframe, python3-click, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-scipy, python3-yaml, python3:any
Suggests: python3-pairtools-examples (>= 1.0.2)
Section: python
Priority: optional
Homepage: https://github.com/mirnylab/pairtools
Description: Framework to process sequencing data from a Hi-C experiment
 Simple and fast command-line framework to process sequencing data from a Hi-C
 experiment.
 .
 Process pair-end sequence alignments and perform the following operations:
 .
   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
     sequences of Hi-C DNA molecules
   - Sort .pairs files for downstream analyses
   - Detect, tag and remove PCR/optical duplicates
   - Generate extensive statistics of Hi-C datasets
   - Select Hi-C pairs given flexibly defined criteria
   - Restore .sam alignments from Hi-C pairs
