## pairs format v1.0.0
#shape: upper triangle
#genome_assembly: unknown
#samheader: @SQ	SN:chr1	LN:10000
#samheader: @SQ	SN:chr2	LN:10000
#samheader: @PG	ID:bwa	PN:bwa	VN:0.7.15-r1140	CL:bwa mem -SP /path/ucsc.hg19.fasta.gz /path/1.fastq.gz /path/2.fastq.gz
#chromosomes: chr1 chr2
#chromsize: chr1 10000
#chromsize: chr2 10000
#columns: readID chrom1 pos1 chrom2 pos2 strand1 strand2 pair_type sam1 sam2
readid01	chr1	1	chr1	2	+	+	UU
readid02	chr1	1	chr2	2	+	+	UU
readid03	chr1	2	chr1	1	+	+	UU
readid04	chr1	21	chr1	2	+	+	UU
readid05	chr2	2	chr1	1	+	+	UU
readid06	chr2	1	chr1	2	+	+	UU
readid07	chr1	2	chr1	1	-	+	UU
readid08	chr1	2	chr1	1	+	+	RU
readid09	!	0	chr1	3	-	+	NU
readid10	!	0	chr1	3	-	+	MU
readid11	!	0	!	0	+	-	WW
readid12	chr1	1	chrU	1	+	+	UU
readid13	chrU	1	chr1	1	+	+	UU
readid14	chrU	100	chrU	1	+	+	UU
readid15	chrU1	100	chrU	100	+	+	UU
readid16	!	0	chrU	100	+	+	NU
readid17	chrU	0	!	0	+	+	UN
