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BioeffectsContainer.hpp
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// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
// vi: set et ts=4 sw=4 sts=4:
/*
This file is part of the Open Porous Media project (OPM).
OPM is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
(at your option) any later version.
OPM is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with OPM. If not, see <http://www.gnu.org/licenses/>.
Consult the COPYING file in the top-level source directory of this
module for the precise wording of the license and the list of
copyright holders.
*/
#ifndef OPM_BIOEFFECTS_CONTAINER_HPP
#define OPM_BIOEFFECTS_CONTAINER_HPP
#include <vector>
namespace Opm {
namespace data { class Solution; }
template<class Scalar> struct BioeffectsSolutionContainer;
template<class Scalar>
class BioeffectsContainer
{
using ScalarBuffer = std::vector<Scalar>;
public:
void allocate(const unsigned bufferSize, const bool isMICP);
void assign(const unsigned globalDofIdx,
const Scalar oxygenConcentration,
const Scalar ureaConcentration,
const Scalar calciteVolumeFraction);
void assign(const unsigned globalDofIdx,
const Scalar microbialConcentration,
const Scalar biofilmVolumeFraction);
BioeffectsSolutionContainer<Scalar> getSolution() const;
void outputRestart(data::Solution& sol, const bool isMICP);
void readRestart(const unsigned globalDofIdx,
const unsigned elemIdx,
const data::Solution& sol,
const bool isMICP);
bool allocated() const
{ return allocated_; }
private:
bool allocated_ = false;
ScalarBuffer cMicrobes_{};
ScalarBuffer cOxygen_{};
ScalarBuffer cUrea_{};
ScalarBuffer cBiofilm_{};
ScalarBuffer cCalcite_{};
};
} // namespace Opm
#endif // OPM_BIOEFFECTS_CONTAINER_HPP
Opm::BioeffectsContainer
Definition BioeffectsContainer.hpp:38
Opm
This file contains a set of helper functions used by VFPProd / VFPInj.
Definition blackoilbioeffectsmodules.hh:43
Opm::BioeffectsSolutionContainer
Struct holding MICP extension data.
Definition SolutionContainers.hpp:57