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Here is a list of all class members with links to the classes they belong to:

### - s -

- S4 : OBPointGroup
- S6 : OBPointGroup
- S8 : OBPointGroup
- SaveUniqueRing() : OBRingSearch
- Score() : OBConformerScore, OBEnergyConformerScore, OBMinimizingEnergyConformerScore, OBMinimizingRMSDConformerScore, OBRMSDConformerScore
- score : OBScoreGrid
- Search() : OBConformerSearch
- second : quad< T1, T2, T3, T4 >, triple< T1, T2, T3 >
- second_type : quad< T1, T2, T3, T4 >, triple< T1, T2, T3 >
- Seed() : OBRandom
- seek64 : FptIndexHeader
- seekdata : FptIndex
- seekoff() : FilteringInputStreambuf< Extractor >
- seekpos() : FilteringInputStreambuf< Extractor >
- Separate() : OBMol
- Set() : matrix3x3, OBBond, OBRotor, vector3
- SetAccuracy() : OBSpectrophore
- SetAlias() : AliasData
- SetAliasMode() : OBDepict
- SetAlphaOrbitals() : OBOrbitalData
- SetAlphaSharing() : OBConformerSearch
- SetAngle() : OBAngle, OBTorsion
- SetAromatic() : OBAtom, OBBond
- SetAromaticPerceived() : OBMol
- SetAtom() : OBExternalBond
- SetAtomicNum() : OBAtom
- SetAtomID() : OBResidue
- SetAtoms() : OBAngle
- SetAtomTypesPerceived() : OBMol
- SetAttribute() : OBGenericData
- SetAutomaticFormalCharge() : OBMol
- SetAutomaticPartialCharge() : OBMol
- SetAuxConv() : OBConversion
- SetBackground() : CairoPainter
- SetBaseCoordinateSets() : OBRotamerList
- SetBegin() : OBBond
- SetBetaOrbitals() : OBOrbitalData
- SetBit() : OBFingerprint
- SetBitOff() : OBBitVec
- SetBitOn() : OBBitVec
- SetBond() : OBExternalBond, OBRotor
- SetBondColor() : CairoPainter, OBDepict
- SetBondLength() : OBDepict
- SetBondOrder() : OBBond
- SetBondSpacing() : OBDepict
- SetBondWidth() : OBDepict
- SetChain() : OBResidue
- SetChainNum() : OBResidue
- SetChainsPerceived() : OBMol
- SetChiralityPerceived() : OBMol
- SetClosure() : OBBond
- SetClosureBondsPerceived() : OBMol
- SetCoeff() : OBNasaThermoData
- SetColor() : AliasData
- SetColumn() : matrix3x3
- SetComment() : OBReaction
- SetComponentId() : OBReactionFacade
- SetConfig() : OBCisTransStereo, OBSquarePlanarStereo, OBTetrahedralStereo
- SetConformer() : OBMol
- SetConformers() : OBForceField, OBMol
- SetConstraints() : OBForceField
- SetConvergence() : OBConformerSearch
- SetCoordinates() : OBForceField, OBMol
- SetCoordPtr() : OBAtom
- SetCorrectedForPH() : OBMol
- SetCropping() : CairoPainter
- SetCrossoverProbability() : OBConformerSearch
- SetCurrentCoordinates() : OBRotamerList
- SetData() : OBAngleData, OBBase, OBCommentData, OBConformerData, OBDOSData, OBElectronicTransitionData, OBExternalBondData, OBMatrixData, OBOrbital, OBRingData, OBRotationData, OBSerialNums, OBSetData, OBSymmetryData, OBTorsion, OBTorsionData, OBUnitCell, OBVectorData, OBVibrationData
- SetDelta() : OBRotor, OBRotorRule
- SetDielectricConstant() : OBForceField
- SetDihedralAtoms() : OBRotor
- SetDimension() : OBConformerData, OBMol
- SetDisplacements() : OBConformerData
- SetEDipole() : OBElectronicTransitionData
- SetEfficiency() : OBRateData
- SetElectrostaticCutOff() : OBForceField
- SetEnd() : OBBond
- SetEnergies() : OBConformerData, OBMol
- SetEnergy() : OBMol
- SetEnvironmentVariable() : OBGlobalDataBase
- SetEvalAtoms() : OBRotor, OBRotorList
- SetFactor() : OBFFConstraints
- SetFilename() : OBRotorRules
- SetFillColor() : ASCIIPainter, CairoPainter, CommandPainter, OBPainter
- SetFillRadial() : ASCIIPainter, CairoPainter, CommandPainter, OBPainter
- SetFilter() : OBConformerSearch
- SetFirstInput() : OBConversion
- SetFixAtom() : OBForceField
- SetFixAtoms() : OBRotorList
- SetFixedAtoms() : OBRotor
- SetFixedBonds() : OBConformerSearch, OBRotor, OBRotorList
- SetFlag() : OBAtom, OBBond, OBMol
- SetFlags() : OBFingerprint, OBMol
- SetFontFamily() : ASCIIPainter, CairoPainter, CommandPainter, OBDepict, OBPainter
- SetFontSize() : ASCIIPainter, CairoPainter, CommandPainter, OBDepict, OBPainter
- SetForces() : OBConformerData
- SetFormalCharge() : OBAtom
- SetFormalCharges() : OBForceField
- SetFormula() : OBMol
- SetFromType() : OBTypeTable
- SetGradient() : OBForceField
- SetGridType() : OBProxGrid
- SetHallName() : SpaceGroup
- SetHash() : OBBond
- SetHeight() : CairoPainter
- SetHetAtom() : OBResidue
- SetHiT() : OBNasaThermoData
- SetHMName() : SpaceGroup
- SetHOMO() : OBOrbitalData
- SetHyb() : OBAtom
- SetHybAndGeom() : OBAtom
- SetHybridizationPerceived() : OBMol
- SetHydrogensAdded() : OBMol
- SetId() : OBAtom, OBBond, SpaceGroup
- SetIdx() : OBAtom, OBBond, OBExternalBond, OBResidue, OBRotor
- SetIgnoreAtom() : OBForceField
- SetImplicitHCount() : OBAtom
- SetInAndOutFormats() : OBConversion
- SetIndex() : CairoPainter
- SetInFormat() : OBConversion
- SetInRing() : OBAtom, OBBond
- SetInsertionCode() : OBResidue
- SetInStream() : OBConversion
- SetInternalCoord() : OBMol
- SetIsotope() : OBAtom
- SetIsPatternStructure() : OBMol
- SetIsReaction() : OBMol
- SetKeepRings() : OBBuilder
- SetLast() : OBConversion
- SetLatticeType() : OBUnitCell
- SetLength() : OBBond
- SetLimits() : OBFloatGrid, OBGridData
- SetLineSearchType() : OBForceField
- SetLocale() : OBLocale
- SetLocalOptRate() : OBConformerSearch
- SetLogFile() : OBForceField
- SetLogLevel() : OBForceField
- SetLogStream() : OBConformerSearch
- SetLoRate() : OBRateData
- SetLoT() : OBNasaThermoData
- SetLSSRPerceived() : OBMol
- SetMaxLogEntries() : OBMessageHandler
- SetMethod() : OBAlign
- SetMidT() : OBNasaThermoData
- SetMoreFilesToCome() : OBConversion
- SetMutability() : OBConformerSearch
- SetName() : OBResidue
- SetNbNiches() : OBConformerSearch
- SetNicheMating() : OBConformerSearch
- SetNicheRadius() : OBConformerSearch
- SetNormalization() : OBSpectrophore
- SetNum() : OBResidue
- SetNumberOfPoints() : OBFloatGrid, OBGridData
- SetNumChildren() : OBConformerSearch
- SetNumConformers() : OBConformerSearch
- SetNumCoords() : OBRotor
- SetNumSymmetries() : OBGridData
- SetOffset() : OBUnitCell
- SetOneObjectOnly() : OBConversion
- SetOpenShell() : OBOrbitalData
- SetOption() : OBDepict
- SetOptions() : OBConversion
- SetOrigin() : OBGenericData
- SetOutFormat() : OBConversion
- SetOutputIndex() : OBConversion
- SetOutputLevel() : OBMessageHandler
- SetOutputStream() : OBMessageHandler
- SetOutStream() : OBConversion
- SetParameterFile() : OBForceField
- SetParent() : OBAtom, OBBond, OBRing
- SetPartialCharge() : OBAtom
- SetPartialCharges() : OBForceField
- SetPartialChargesPerceived() : OBMol
- SetPenColor() : ASCIIPainter, CairoPainter, CommandPainter, OBPainter
- SetPenWidth() : ASCIIPainter, CairoPainter, CommandPainter, OBDepict, OBPainter
- SetPeriodicMol() : OBMol
- SetPhase() : OBNasaThermoData
- SetPointGroup() : OBSymmetryData
- SetQuiet() : OBRotorList
- SetRangeOff() : OBBitVec
- SetRangeOn() : OBBitVec
- SetRate() : OBRateData
- SetReadDirectory() : OBGlobalDataBase
- SetRef() : OBAlign
- SetRefMol() : OBAlign
- SetResidue() : OBAtom
- SetResName() : OBResidueData
- SetResolution() : OBSpectrophore
- SetReversible() : OBReaction
- SetRingAtomsAndBondsPerceived() : OBMol
- SetRings() : OBRotor
- SetRingTypesPerceived() : OBMol
- SetRole() : OBReactionFacade
- SetRotAtoms() : OBRotor, OBRotorList
- SetRotAtomsByFix() : OBRotorList
- SetRotatoryStrengthsLength() : OBElectronicTransitionData
- SetRotatoryStrengthsVelocity() : OBElectronicTransitionData
- SetRotor() : OBRotor
- SetRow() : matrix3x3
- SetScore() : OBConformerSearch
- SetSerialNum() : OBResidue
- SetSharing() : OBConformerSearch
- SetSigmaSharing() : OBConformerSearch
- SetSource() : FilteringInputStreambuf< Extractor >
- SetSpaceGroup() : OBSymmetryData, OBUnitCell
- SetSpecified() : OBStereoBase
- SetSpinMultiplicity() : OBAtom
- SetSpinMultiplicityAssigned() : OBMol
- SetSSSRPerceived() : OBMol
- SetStartAndEnd() : OBConversion
- SetStereo() : OBSpectrophore
- SetTableSize() : CairoPainter
- SetTarget() : OBAlign
- SetTargetMol() : OBAlign
- SetText() : OBText
- SetTimeout() : OBIsomorphismMapper
- SetTitle() : CairoPainter, OBBase, OBMol, OBReaction
- SetToAngle() : OBRotor
- SetTorsion() : OBMol
- SetTorsionValues() : OBRotor
- SetTotalCharge() : OBMol
- SetTotalSpinMultiplicity() : OBMol
- SetToType() : OBTypeTable
- SetTransitionState() : OBReaction
- SetTransparent() : CairoPainter
- SetTroeParams() : OBRateData
- SetType() : OBAtom, OBRing, OBScoreGrid
- SetTypes() : OBForceField
- SetUnit() : OBGridData
- SetUnrestricted() : OBGridData
- Setup() : OBConformerSearch, OBFFConstraints, OBForceField, OBPointGroup, OBProxGrid, OBRotamerList, OBRotorList, OBScoreGrid
- SetupAtomMatchTable() : OBSmartsMatcher
- SetupCalculations() : OBForceField
- SetUpdateFrequency() : OBForceField
- SetupPointers() : OBFFCalculation2, OBFFCalculation3, OBFFCalculation4, OBForceField
- SetupReader() : XMLConversion
- SetupRotMat() : matrix3x3
- SetupWriter() : XMLConversion
- SetV() : OBFreeGridPoint
- SetVals() : OBFloatGrid
- SetValue() : OBFloatGrid, OBGridData, OBPairData, OBPairTemplate< ValueT >
- SetValues() : GasteigerState, OBGridData
- SetVDWCutOff() : OBForceField
- SetVector() : OBAtom
- SetVelocities() : OBConformerData
- SetVerbose() : OBScoreGrid
- SetWedge() : OBBond
- SetWedgeOrHash() : OBBond
- SetWidth() : CairoPainter
- SetX() : OBFreeGridPoint, vector3
- SetXAxis() : OBFloatGrid
- SetY() : OBFreeGridPoint, vector3
- SetYAxis() : OBFloatGrid
- SetZ() : OBFreeGridPoint, vector3
- SetZAxis() : OBFloatGrid
- Shape : OBStereo
- shape : OBCisTransConfig, OBCisTransStereo::Config, OBSquarePlanarConfig, OBSquarePlanarStereo::Config
- Shape4 : OBStereo
- ShapeU : OBStereo
- ShapeZ : OBStereo
- Simple : LineSearchType
- Single : OBSmartsPattern
- Size() : OBFFConstraints, OBRing, OBRotor, OBRotorList
- SkipObjects() : OBFormat, XMLBaseFormat
- SkippedMolecules : OBConversion
- SkipXML() : XMLConversion
- Sleep() : DLHandler
- SmallestBondAngle() : OBAtom
- SMARTSError() : OBSmartsPattern
- SMARTSParser() : OBSmartsPattern
- SortByIndex() : OBAngle
- SortRings() : OBRingSearch
- SpaceGroup() : SpaceGroup
- SpecificationURL() : OBFormat
- specified : OBCisTransConfig, OBCisTransStereo::Config, OBSquarePlanarConfig, OBSquarePlanarStereo::Config, OBTetrahedralConfig, OBTetrahedralStereo::Config
- Sqrt() : OBSqrtTbl
- SquarePlanar : OBStereo
- src : BondSpec
- SRI : OBRateData
- Start() : OBStopwatch
- StartErrorWrap() : OBMessageHandler
- StartLogging() : OBMessageHandler
- StartNumber : OBConversion
- SteepestDescent() : OBForceField
- SteepestDescentInitialize() : OBForceField
- SteepestDescentTakeNSteps() : OBForceField
- StereoFlag : OBAtom, OBBond
- StereoOption : OBSpectrophore
- StopErrorWrap() : OBMessageHandler
- StopLogging() : OBMessageHandler
- StreamState() : OBConversion::StreamState
- StripSalts() : OBMol
- Sum : OBConformerScore
- SupportedInputFormat : OBConversion
- SupportedOutputFormat : OBConversion
- Swap() : OBBuilder
- Symbol : OBPointGroup
- SYMMETRIC : OBRotationData
- Symmetrize() : OBPointGroup
- SymNum : OBRotationData
- sync() : FilteringInputStreambuf< Extractor >, obLogBuf
- SystematicRotorSearch() : OBForceField
- SystematicRotorSearchInitialize() : OBForceField
- SystematicRotorSearchNextConformer() : OBForceField