Home · Quickstart · User Guide and Examples · Interfaces Index · Developers · About · Nipy

# nipype.interfaces.slicer.filtering.extractskeleton module

Autogenerated file - DO NOT EDIT If you spot a bug, please report it on the mailing list and/or change the generator.

## ExtractSkeleton

Link to code

> Bases: SEMLikeCommandLine

> Wrapped executable: `ExtractSkeleton`.

> title: Extract Skeleton

> category: Filtering

> description: Extract the skeleton of a binary object. The skeleton can be limited to being a 1D curve or allowed to be a full 2D manifold. The branches of the skeleton can be pruned so that only the maximal center skeleton is returned.

> version: 0.1.0.$Revision: 2104 $(alpha)

> documentation-url: http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/ExtractSkeleton

> contributor: Pierre Seroul (UNC), Martin Styner (UNC), Guido Gerig (UNC), Stephen Aylward (Kitware)

> acknowledgements: The original implementation of this method was provided by ETH Zurich, Image Analysis Laboratory of Profs Olaf Kuebler, Gabor Szekely and Guido Gerig. Martin Styner at UNC, Chapel Hill made enhancements. Wrapping for Slicer was provided by Pierre Seroul and Stephen Aylward at Kitware, Inc.

> InputImageFileNamea pathlike object or string representing an existing file

>   Input image. Maps to a command-line argument: `%s` (position: -2).

> OutputImageFileNamea boolean or a pathlike object or string representing a file

>   Skeleton of the input image. Maps to a command-line argument: `%s` (position: -1).

> argsa unicode string

>   Additional parameters to the command. Maps to a command-line argument: `%s`.

> dontPrunea boolean

>   Return the full skeleton, not just the maximal skeleton. Maps to a command-line argument: `--dontPrune`.

> environa dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’

>   Environment variables. (Nipype default value: `{}`)

> numPointsan integer (int or long)

>   Number of points used to represent the skeleton. Maps to a command-line argument: `--numPoints %d`.

> pointsFilea unicode string

>   Name of the file to store the coordinates of the central (1D) skeleton points. Maps to a command-line argument: `--pointsFile %s`.

> type‘1D’ or ‘2D’

>   Type of skeleton to create. Maps to a command-line argument: `--type %s`.

> OutputImageFileNamea pathlike object or string representing an existing file

>   Skeleton of the input image.