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# interfaces.semtools.brains.classify

## BRAINSPosteriorToContinuousClass

Link to code

Wraps command ** BRAINSPosteriorToContinuousClass **

title: Tissue Classification

category: BRAINS.Classify

description: This program will generate an 8-bit continuous tissue classified image based on BRAINSABC posterior images.

version: 3.0

documentation-url: http://www.nitrc.org/plugins/mwiki/index.php/brains:BRAINSClassify

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: Vincent A. Magnotta

acknowledgements: Funding for this work was provided by NIH/NINDS award NS050568

Inputs:

    [Mandatory]

    [Optional]
    args: (a unicode string)
            Additional parameters to the command
            flag: %s
    environ: (a dictionary with keys which are a newbytes or None or a
             newstr or None and with values which are a newbytes or None or a
             newstr or None, nipype default value: {})
            Environment variables
    ignore_exception: (a boolean, nipype default value: False)
            Print an error message instead of throwing an exception in case the
            interface fails to run
    inputBasalGmVolume: (an existing file name)
            Basal Grey Matter Posterior Volume
            flag: --inputBasalGmVolume %s
    inputCrblGmVolume: (an existing file name)
            Cerebellum Grey Matter Posterior Volume
            flag: --inputCrblGmVolume %s
    inputCrblWmVolume: (an existing file name)
            Cerebellum White Matter Posterior Volume
            flag: --inputCrblWmVolume %s
    inputCsfVolume: (an existing file name)
            CSF Posterior Volume
            flag: --inputCsfVolume %s
    inputSurfaceGmVolume: (an existing file name)
            Surface Grey Matter Posterior Volume
            flag: --inputSurfaceGmVolume %s
    inputVbVolume: (an existing file name)
            Venous Blood Posterior Volume
            flag: --inputVbVolume %s
    inputWhiteVolume: (an existing file name)
            White Matter Posterior Volume
            flag: --inputWhiteVolume %s
    outputVolume: (a boolean or a file name)
            Output Continuous Tissue Classified Image
            flag: --outputVolume %s
    terminal_output: (u'stream' or u'allatonce' or u'file' or u'none')
            Control terminal output: `stream` - displays to terminal immediately
            (default), `allatonce` - waits till command is finished to display
            output, `file` - writes output to file, `none` - output is ignored

Outputs:

    outputVolume: (an existing file name)
            Output Continuous Tissue Classified Image