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# About

## Citation

Reference

Gorgolewski, Krzysztof J.; Esteban, Oscar; Ellis, David Gage; Notter, Michael Philipp; Ziegler, Erik; Johnson, Hans; Hamalainen, Carlo; Yvernault, Benjamin; Burns, Christopher; Manhães-Savio, Alexandre; Jarecka, Dorota; Markiewicz, Christopher J.; Salo, Taylor; Clark, Daniel; Waskom, Michael; Wong, Jason; Modat, Marc; Dewey, Blake E; Clark, Michael G.; Dayan, Michael; Loney, Fred; Madison, Cindee; Gramfort, Alexandre; Keshavan, Anisha; Berleant, Shoshana; Pinsard, Basile; Goncalves, Mathias; Clark, Dav; Cipollini, Ben; Varoquaux, Gael; Wassermann , Demian; Rokem, Ariel; Halchenko, Yaroslav O.; Forbes, Jessica; Moloney, Brendan; Malone, Ian B.; Hanke, Michael; Mordom, David; Buchanan, Colin; PAULI, WOLFGANG M.; Huntenburg, Julia M.; Horea, Christian; Schwartz, Yannick; Tungaraza, Rosalia; Iqbal, Shariq; Kleesiek, Jens; Sikka, Sharad; Frohlich, Caroline; Kent, James; Perez-Guevara, Martin; Watanabe, Aimi; Welch, David; Cumba, Chad; Ginsburg, Daniel; Eshaghi, Arman; Kastman, Erik; Bougacha, Salma; Blair, Ross; Acland, Benjamin; Gillman, Ashley; Schaefer, Alexander; Nichols, B. Nolan; Giavasis, Steven; Erickson, Drew; Correa, Carlos; Ghayoor, Ali; Küttner, René; Haselgrove, Christian; Zhou, Dale; Craddock, R. Cameron; Haehn, Daniel; Lampe, Leonie; Millman, Jarrod; Lai, Jeff; Renfro, Mandy; Liu, Siqi; Stadler, Jörg; Glatard, Tristan; Kahn, Ari E.; Kong, Xiang-Zhen; Triplett, William; Park, Anne; McDermottroe, Conor; Hallquist, Michael; Poldrack, Russell; Perkins, L. Nathan; Noel, Maxime; Gerhard, Stephan; Salvatore, John; Mertz, Fred; Broderick, William; Inati, Souheil; Hinds, Oliver; Brett, Matthew; Durnez, Joke; Tambini, Arielle; Rothmei, Simon; Andberg, Sami Kristian; Cooper, Gavin; Marina, Ana; Mattfeld, Aaron; Urchs, Sebastian; Sharp, Paul; Matsubara, K; Geisler, Daniel; Cheung, Brian; Floren, Andrew; Nickson, Thomas; Pannetier, Nicolas; Weinstein, Alejandro; Dubois, Mathieu; Arias, Jaime; Tarbert, Claire; Schlamp, Kai; Jordan, Kesshi; Liem, Franz; Saase, Victor; Harms, Robbert; Khanuja, Ranjeet; Podranski, Kornelius; Flandin, Guillaume; Papadopoulos Orfanos, Dimitri; Schwabacher, Isaac; McNamee, Daniel; Falkiewicz, Marcel; Pellman, John; Linkersdörfer, Janosch; Varada, Jan; Pérez-García, Fernando; Davison, Andrew; Shachnev, Dmitry; Ghosh, Satrajit (2017). Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.0 Zenodo. 10.5281/zenodo.581704

    @misc{gorgolewski_krzysztof_j_2017_581704,
         author   = {Gorgolewski, Krzysztof J. and
                 Esteban, Oscar and
                 Ellis, David Gage and
                 Notter, Michael Philipp and
                 Ziegler, Erik and
                 Johnson, Hans and
                 Hamalainen, Carlo and
                 Yvernault, Benjamin and
                 Burns, Christopher and
                 Manhães-Savio, Alexandre and
                 Jarecka, Dorota and
                 Markiewicz, Christopher J. and
                 Salo, Taylor and
                 Clark, Daniel and
                 Waskom, Michael and
                 Wong, Jason and
                 Modat, Marc and
                 Dewey, Blake E and
                 Clark, Michael G. and
                 Dayan, Michael and
                 Loney, Fred and
                 Madison, Cindee and
                 Gramfort, Alexandre and
                 Keshavan, Anisha and
                 Berleant, Shoshana and
                 Pinsard, Basile and
                 Goncalves, Mathias and
                 Clark, Dav and
                 Cipollini, Ben and
                 Varoquaux, Gael and
                 Wassermann , Demian and
                 Rokem, Ariel and
                 Halchenko, Yaroslav O. and
                 Forbes, Jessica and
                 Moloney, Brendan and
                 Malone, Ian B. and
                 Hanke, Michael and
                 Mordom, David and
                 Buchanan, Colin and
                 PAULI, WOLFGANG M. and
                 Huntenburg, Julia M. and
                 Horea, Christian and
                 Schwartz, Yannick and
                 Tungaraza, Rosalia and
                 Iqbal, Shariq and
                 Kleesiek, Jens and
                 Sikka, Sharad and
                 Frohlich, Caroline and
                 Kent, James and
                 Perez-Guevara, Martin and
                 Watanabe, Aimi and
                 Welch, David and
                 Cumba, Chad and
                 Ginsburg, Daniel and
                 Eshaghi, Arman and
                 Kastman, Erik and
                 Bougacha, Salma and
                 Blair, Ross and
                 Acland, Benjamin and
                 Gillman, Ashley and
                 Schaefer, Alexander and
                 Nichols, B. Nolan and
                 Giavasis, Steven and
                 Erickson, Drew and
                 Correa, Carlos and
                 Ghayoor, Ali and
                 Küttner, René and
                 Haselgrove, Christian and
                 Zhou, Dale and
                 Craddock, R. Cameron and
                 Haehn, Daniel and
                 Lampe, Leonie and
                 Millman, Jarrod and
                 Lai, Jeff and
                 Renfro, Mandy and
                 Liu, Siqi and
                 Stadler, Jörg and
                 Glatard, Tristan and
                 Kahn, Ari E. and
                 Kong, Xiang-Zhen and
                 Triplett, William and
                 Park, Anne and
                 McDermottroe, Conor and
                 Hallquist, Michael and
                 Poldrack, Russell and
                 Perkins, L. Nathan and
                 Noel, Maxime and
                 Gerhard, Stephan and
                 Salvatore, John and
                 Mertz, Fred and
                 Broderick, William and
                 Inati, Souheil and
                 Hinds, Oliver and
                 Brett, Matthew and
                 Durnez, Joke and
                 Tambini, Arielle and
                 Rothmei, Simon and
                 Andberg, Sami Kristian and
                 Cooper, Gavin and
                 Marina, Ana and
                 Mattfeld, Aaron and
                 Urchs, Sebastian and
                 Sharp, Paul and
                 Matsubara, K and
                 Geisler, Daniel and
                 Cheung, Brian and
                 Floren, Andrew and
                 Nickson, Thomas and
                 Pannetier, Nicolas and
                 Weinstein, Alejandro and
                 Dubois, Mathieu and
                 Arias, Jaime and
                 Tarbert, Claire and
                 Schlamp, Kai and
                 Jordan, Kesshi and
                 Liem, Franz and
                 Saase, Victor and
                 Harms, Robbert and
                 Khanuja, Ranjeet and
                 Podranski, Kornelius and
                 Flandin, Guillaume and
                 Papadopoulos Orfanos, Dimitri and
                 Schwabacher, Isaac and
                 McNamee, Daniel and
                 Falkiewicz, Marcel and
                 Pellman, John and
                 Linkersdörfer, Janosch and
                 Varada, Jan and
                 Pérez-García, Fernando and
                 Davison, Andrew and
                 Shachnev, Dmitry and
                 Ghosh, Satrajit},
         title        = {nipy/nipype: Release 0.13.1},
         month        = may,
         year         = 2017,
         doi          = {10.5281/zenodo.581704},
         url          = {https://doi.org/10.5281/zenodo.581704}
     }

If you are a Nipype contributor and your name is not mentioned above please submit a Pull Request modifying .zenodo.json file.

When publishing results obtained using Nipype we strongly encourage citing the above reference to give credit to all Nipype contributors. However, if for some reason the journal you are publishing with does not allow you do cite software this way you can use the initial paper published in 2011 (see below).

Reference

Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS. (2011). Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. Front. Neuroimform. 5:13.

Download Paper

    @article { Gorgolewski2011,
        title            = "Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python.",
        year             = "2011",
        author           = "Krzysztof Gorgolewski and Christopher D Burns and Cindee Madison and Dav Clark and Yaroslav O Halchenko and Michael L Waskom and Satrajit S Ghosh",
        journal          = "Front Neuroinform",
        volume           = "5",
        month            = "08",
        doi              = "10.3389/fninf.2011.00013",
        pubmed           = "21897815",
        url              = "http://dx.doi.org/10.3389/fninf.2011.00013",
        issn             = "1662-5196"}

## Code contributors

See Github contributors list.

## Funding

Nipype is currently supported by 1R01EB020740-01A1 Nipype: Dataflows for Reproducible Biomedical Research.

Satrajit Ghosh work on this project was partially funded by NIBIB R03EB008673 and by the INCF through a contract with TankThink Labs, LLC. Chris Burns was supported by NIMH grant 5R01MH081909-02 Continued Development and Maintenance of the Neuroimaging in Python Project. Hans Jonson was supported by 2 U54 EB005149 - 06 Core 2b Huntington’s Disease - Driving Biological Project, S10 RR023392 Enterprise Storage In A Collaborative Neuroimaging Environment, R01 NS040068 Neurobiological Predictors of Huntington’s Disease, and UL1 TR000442 University of Iowa Clinical and Translational Science Program.

We would also like to thank JetBrains for providing Pycharm licenses.