Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: https://ftp.ncbi.nih.gov/blast/executables/igblast/release/
Upstream-Contact: blast-help@ncbi.nlm.nih.gov
Upstream-Name: IgBlast
Files-Excluded:
 c++/include/util/lmdb
 c++/src/util/lmdb

Files: *
Copyright: 2018, National Center for Biotechnology Information
License: PD

Files: c++/include/util/compress/bzip2/*
       c++/src/util/compress/bzip2/*
Copyright: 1996-2010, Julian Seward <jseward@bzip.org>
License: BSD-variant
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Files: c++/src/util/compress/bzip2/dlltest.c
Copyright: Yoshioka Tsuneo
License: PD

Files: c++/include/corelib/hash_impl/_hash_fun.h
       c++/include/corelib/hash_impl/_hash_map.h
       c++/include/corelib/hash_impl/_hash_set.h
       c++/include/corelib/hash_impl/_hashtable.c
       c++/include/corelib/hash_impl/_hashtable.h
Copyright: 1996-1998, Silicon Graphics Computer Systems, Inc.
           1994, Hewlett-Packard Company
           1999, Boris Fomitchev
           1997, Moscow Center for SPARC Technology
           1996, 1997, Silicon Graphics Computer Systems, Inc.
           1994, Hewlett-Packard Company
License: ISC-variant
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Files: c++/include/corelib/teamcity_messages.h
       c++/src/corelib/teamcity_boost.cpp
       c++/src/corelib/teamcity_messages.cpp
Copyright: 2011, JetBrains s.r.o.
License: Apache-2.0

Files: c++/include/dbapi/driver/odbc/unix_odbc/odbcinst.h
       c++/include/dbapi/driver/odbc/unix_odbc/sqlfront.h
Copyright: 1999, Peter Harvey
           1998, 1999, Brian Bruns
License: LGPL-2+

Files: c++/include/misc/jsonwrapp/rapidjson11/*
Copyright: 2015, THL A29 Limited, a Tencent company, and Milo Yip.
License: Expat
Comment:
 The license.txt presents effectively the "Evil" statement which is problematic
 regarding DFSG compatibility, however as documented in lintian-overrides:
 .
  > Aaron M. Ucko: As this file explains, the problematic JSON license applies
  > only to a jsonchecker subtree NCBI already doesn't redistribute.

Files: c++/include/misc/jsonwrapp/rapidjson11/msinttypes/*
Copyright: 2006-2013, Alexander Chemeris
License: BSD-3-clause

Files: c++/include/objtools/blast/seqdb_reader/impl/seqdbatlas.hpp
Copyright: National Center for Biotechnology Information
License: PD
Comment:
 The "Copyright (c) 2000 by Houghton Mifflin Company" is about the book
 "The American Heritage Dictionary of the English Language, 4th Edition."
 referenced in the source file, not about the source file itself.

Files: c++/include/util/bitset/*
       c++/src/util/bitset/*
Copyright: 2002-2021, Anatoliy Kuznetsov(anatoliy_kuznetsov at yahoo.com)
License: Apache-2.0
Comment:
 Some of the algorithms here are based on modified libpopcnt library by Kim
 Walisch[1], released under BSD-2-clause license.
 .
 [1]: https://github.com/kimwalisch/libpopcnt/

Files: c++/include/util/bitset/ncbi_bitset.hpp
       c++/include/util/bitset/ncbi_bitset_alloc.hpp
       c++/include/util/bitset/ncbi_bitset_util.hpp
Copyright: 2018, National Center for Biotechnology Information
License: PD

Files: c++/include/util/compress/zlib/*
       c++/src/util/compress/zlib/*
Copyright: 1995-2013, Jean-loup Gailly and Mark Adler
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Files: c++/src/util/compress/zlib/ncbi_z_compress.c
Copyright: National Center for Biotechnology Information
License: PD

Files: c++/include/util/impl/floating_point_comparison.hpp
Copyright: 2001-2008, Gennadiy Rozental
License: BSL-1.0

Files: c++/include/util/regexp/*
       c++/src/util/regexp/*
Copyright: 2003, 2005, 2010, Google Inc.
           1997-2018, University of Cambridge
License: BSD-3-clause

Files: c++/include/util/timsort.hpp
Copyright: 2011, Fuji, Goro (gfx) <gfuji@cpan.org>.
License: Expat

Files: c++/scripts/projects/xmlwrapp/*
Copyright: 2001-2003, Peter J Jones (pjones@pmade.org)
License: BSD-3-clause
Comment: Modifications from NCBI released under Public Domain.

Files: c++/scripts/projects/igblast/*
Copyright: National Center for Biotechnology Information
License: PD or LGPL-2.1

Files: c++/scripts/projects/quickblastp/*
Copyright: National Center for Biotechnology Information
License: PD or LGPL-2.1

Files: c++/src/algo/blast/core/boost_erf.c
Copyright: John Maddock 2006.
License: BSL-1.0

Files: c++/src/algo/blast/core/ncbi_erf.c
       c++/src/util/miscmath.c
       c++/src/util/ncbi_erf.c
Copyright: 1993-2004, Sun Microsystems, Inc.
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Files: c++/src/build-system/*
Copyright: 1992-1996, 1998-2012, Free Software Foundation, Inc.
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Files: c++/src/build-system/cmake/unused/FindPCRE.cmake
Copyright: Martin Konrad
License: GPL-2 or GPL-3

Files: c++/src/build-system/cmake/unused/FindSqlite3.cmake
Copyright: 2007, Martin Dobias
License: BSD-3-clause
Comment:
 BSD variant determined by hunting down source code in cmake repository[1].
 .
 [1]: https://github.com/Kitware/CMake/blob/v3.23.1/Modules/FindSQLite3.cmake

Files: c++/src/build-system/cmake/unused/HunterGate.cmake
Copyright: 2013-2017, Ruslan Baratov
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Files: c++/src/build-system/m4/*
Copyright: 2015, Enrico M. Crisostomo <enrico.m.crisostomo@gmail.com>
           2008, John Darrington <j.darrington@elvis.murdoch.edu.au>
           2008, Don Anderson <dda@sleepycat.com>
           2008, Paolo Bonzini <bonzini@gnu.org>
License: FSFAP
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Files: c++/src/connect/parson.c
       c++/src/connect/parson.h
Copyright: 2012-2016, Krzysztof Gabis
License: Expat

Files: c++/src/connect/mbedtls/*
Copyright: The Mbed TLS Contributors
License: Apache-2.0 or GPL-2+

Files: c++/src/connect/mbedtls/mbedtls/threading_alt.h
Copyright: 2018, National Center for Biotechnology Information
License: PD

Files: c++/src/html/*.js
Copyright: 1997-1999, Netscape Communications Corp.
License: Netscape
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Files: c++/src/util/checksum/cityhash/*
       c++/src/util/checksum/farmhash/*
Copyright: 2011, 2014, Google, Inc.
License: Expat

Files: c++/src/util/compress/api/miniz/*
Copyright: 2013, 2014, RAD Game Tools and Valve Software
           2010-2014, Rich Geldreich and Tenacious Software LLC
License: Expat

Files: c++/include/util/lmdb/*
       c++/src/util/lmdb/*
Copyright: 1999-2003, The OpenLDAP Foundation, Redwood City
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Files: c++/src/util/lmdbxx/*
Copyright: Arto Bendiken
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Files: c++/src/util/qparse/query_parser_bison.tab.c
Copyright: 1984, 1989, 1990, 2000-2006, Free Software Foundation, Inc.
License: GPL-3+ with Bison-2.2 exception
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Files: debian/*
Copyright: 2018, David Miguel Susano Pinto <carandraug+dev@gmail.com>
License: GPL-3+

License: PD
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