mdtraj (1.10.3-2build1) plucky; urgency=medium

  * No-change rebuild with Python 3.13 only

 -- Graham Inggs <ginggs@ubuntu.com>  Tue, 04 Mar 2025 15:08:39 +0000

mdtraj (1.10.3-2) unstable; urgency=medium

  * move pandoc to Build-Depends-Indep (for doc build)

 -- Drew Parsons <dparsons@debian.org>  Tue, 11 Feb 2025 12:33:09 +0100

mdtraj (1.10.3-1) unstable; urgency=medium

  * New upstream release
    - supports Numpy 2. Closes: #1094713.
  * debian patch revert_flaky_PR1972.patch reverts upstream PR#1972
    since pytest flaky support is flaky:
    "got an unexpected keyword argument 'condition'"
  * debian/tests: apply Restrictions: needs-internet only to dssp and
    pdb url tests that require internet to access datasources:
    test_3, test_pdb_from_url, test_1vii_url_and_gz

 -- Drew Parsons <dparsons@debian.org>  Tue, 11 Feb 2025 03:32:42 +0100

mdtraj (1.10.1-2) unstable; urgency=medium

  * Team upload.
  * d/control: Remove python3-astunparse from depedencies. It is not
    longer needed.

 -- Emmanuel Arias <eamanu@debian.org>  Mon, 11 Nov 2024 15:52:34 -0300

mdtraj (1.10.1-1) unstable; urgency=medium

  * Team upload.
  * New upstream version.
  * Update patches according to new upstream release:
    - d/patches/rename-mdconvert-mdtraj.patch.
    - d/patches/drop_notebook_in_docs.patch.
    - d/patches/test_increase_timeout.patch.
  * Remove patches, not longer needed:
    - d/patches/fix_netcdf_PR1894.patch.
    - d/patches/remove_six_PR1908.patch.
  * d/control: Add python3-versioneer, pandoc, python3-nbsphinx,
    python3-nbsphinx-link as build dependency.
    - Remove python3-astuparse, it is not longer needed.
  * d/control: Use cython3 instead of cython3-legacy (Closes: #1082092).

 -- Emmanuel Arias <eamanu@debian.org>  Sat, 09 Nov 2024 21:59:21 -0300

mdtraj (1.10.0-3) unstable; urgency=medium

  * only remove python3-specific mdtraj/core/lib (from libtheobald.a)
    if the excess dir exists (it's only left over if there is more
    than one supported python version). Closes: #1076166.

 -- Drew Parsons <dparsons@debian.org>  Sun, 14 Jul 2024 12:37:33 +0200

mdtraj (1.10.0-2) unstable; urgency=medium

  * debian patch remove_six_PR1908.patch applies upstream PR#1908 to
    remove remaining references to six.

 -- Drew Parsons <dparsons@debian.org>  Fri, 05 Jul 2024 18:32:59 +0200

mdtraj (1.10.0-1) unstable; urgency=medium

  * New upstream release
    - drops distutils. Closes: #1065901.
    - drops binpos and tng formats and utils/six.py
  * Build-Depends: (Recommends:) python3-gsd
    - drop debian patch test_gsd_skip.patch
  * debian patch fix_netcdf_PR1894.patch applies upstream PR#1894 to
    fix loading of netcdf files.
    Build-Depends: (Recommends): python3-netcdf4
  * remove python-specific path left by installation of static lib
    libtheobald.a. dh_python3 can't see the static libs are identical
    (mostly). py3.11 compiles libtheobald.o with -fwrapv, where
    py3.12 uses -fno-strict-overflow
  * build docs after dh_auto_install to avoid double-building
  * after dh_auto_clean, remove generated docs and lib
  * Standards-Version: 4.7.0

 -- Drew Parsons <dparsons@debian.org>  Fri, 05 Jul 2024 02:19:44 +0200

mdtraj (1.9.9-1) unstable; urgency=medium

  * Team upload.
  * Switch to cython3-legacy.
    Closes: #1056815
  * Fix clean target
    Closes: #1045994
  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse.
  * Fix field name typo in debian/copyright (Comments ⇒ Comment).
  * Explicitly call dh_python3 in d/rules
  * d/rules: verbose
  * Fix capitalisation in description
  * Set hardening options
  * Manually remove copy of libtheobald.a in /usr/lib/python3.1*/dist-packages
  * Update python_hashbang.patch to replace all instances of /bin/env

 -- Andreas Tille <tille@debian.org>  Tue, 16 Jan 2024 11:14:21 +0100

mdtraj (1.9.7-6) unstable; urgency=medium

  * update debian patch test_relax_tol.patch to relax tolerance in
    periodic test in test_distances_t (test_distance.py).
    Was occasionally failing on arm64.

 -- Drew Parsons <dparsons@debian.org>  Wed, 01 Mar 2023 11:54:43 +0100

# For older changelog entries, run 'apt-get changelog python3-mdtraj'
